Guide to the Human Genome
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Name: SYT8 Sequence: fasta or formatted (401aa) NCBI GI: 94536846
Description:

synaptotagmin VIII

Referenced in:

ER, Golgi, and the Secretory Pathway
Synapses
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         37           2
 C cysteine            2.5         10           4
 D aspartate           3.5         14           1
 E glutamate           4.2         17           1
 F phenylalanine       3.0         12           1
 G glycine             8.2         33           2
 H histidine           4.2         17           1
 I isoleucine          1.5          6           1
 K lysine              3.5         14           2
 L leucine            13.2         53           2
 M methionine          1.5          6           1
 N asparagine          1.0          4           1
 P proline             9.0         36           2
 Q glutamine           5.7         23           2
 R arginine            8.5         34           2
 S serine              4.7         19           2
 T threonine           5.5         22           4
 V valine              7.7         31           3
 W tryptophan          2.0          8           1
 Y tyrosine            1.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptotagmin VIII 
SYT2                  0.335   synaptotagmin II 
SYT2                  0.335   synaptotagmin II 
SYT1                  0.320   synaptotagmin I 
SYT1                  0.320   synaptotagmin I 
SYT1                  0.320   synaptotagmin I 
SYT5                  0.317   synaptotagmin V 
SYT10                 0.181   synaptotagmin X 
SYT6                  0.176   synaptotagmin VI 
SYT9                  0.175   synaptotagmin IX 
SYT7                  0.169   synaptotagmin VII 
SYT3                  0.163   synaptotagmin III 
SYT3                  0.163   synaptotagmin III 
SYT3                  0.163   synaptotagmin III 
SYT17                 0.147   B/K protein 
SYT4                  0.140   synaptotagmin IV 
SYT11                 0.127   synaptotagmin XI 
SYT12                 0.117   synaptotagmin XII 
DOC2B                 0.112   double C2-like domains, beta 
LOC390213             0.103   PREDICTED: hypothetical protein LOC390213 
SYT13                 0.102   synaptotagmin XIII 
SYT15                 0.102   synaptotagmin XV isoform a 
DOC2A                 0.088   double C2-like domains, alpha 
RPH3A                 0.088   rabphilin 3A homolog isoform 1 
RPH3A                 0.088   rabphilin 3A homolog isoform 2 
SYTL4                 0.083   synaptotagmin-like 4 
SYTL4                 0.083   synaptotagmin-like 4 
SYT15                 0.083   synaptotagmin XV isoform b 
LOC390213             0.071   PREDICTED: similar to hCG21066 
LOC390213             0.071   PREDICTED: similar to hCG21066 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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