Guide to the Human Genome
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Name: LOC100292670 Sequence: fasta or formatted (223aa) NCBI GI: 239757956
Description:

PREDICTED: similar to CYorf16 protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         12           1
 C cysteine            4.0          9           1
 D aspartate           3.6          8           1
 E glutamate           4.9         11           1
 F phenylalanine       5.4         12           1
 G glycine            10.3         23           2
 H histidine           4.0          9           1
 I isoleucine          4.0          9           2
 K lysine              2.7          6           1
 L leucine            10.3         23           2
 M methionine          2.7          6           1
 N asparagine          2.2          5           1
 P proline             4.9         11           2
 Q glutamine           4.0          9           1
 R arginine            8.1         18           2
 S serine             11.7         26           2
 T threonine           3.1          7           1
 V valine              4.5         10           1
 W tryptophan          1.8          4           1
 Y tyrosine            2.2          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to CYorf16 protein 
LOC100289265          0.722   PREDICTED: hypothetical protein 
LOC100289265          0.722   PREDICTED: hypothetical protein XP_002344242 
LOC100132932          0.717   PREDICTED: similar to CYorf16 protein 
LOC100289188          0.450   PREDICTED: hypothetical protein XP_002344241 
LOC100289150          0.450   PREDICTED: hypothetical protein XP_002344240 
LOC100287859          0.450   PREDICTED: hypothetical protein XP_002344483 
LOC100287826          0.450   PREDICTED: hypothetical protein XP_002344482 
LOC100287798          0.450   PREDICTED: hypothetical protein XP_002344481 
LOC100132506          0.443   PREDICTED: similar to CYorf16 protein 
LOC100288465          0.346   PREDICTED: hypothetical protein XP_002343910 
LOC100292671          0.337   PREDICTED: similar to CYorf16 protein 
LOC100290384          0.337   PREDICTED: hypothetical protein XP_002348288 
LOC100130208          0.299   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.299   PREDICTED: hypothetical protein 
LOC728403             0.084   PREDICTED: similar to Testis-specific Y-encoded pro...
TSPY1                 0.081   testis specific protein, Y-linked 1 
LOC100289087          0.081   PREDICTED: hypothetical protein XP_002344239 
LOC728132             0.081   PREDICTED: similar to testis specific protein, Y-li...
LOC728395             0.081   PREDICTED: similar to testis specific protein, Y-li...
TSPY3                 0.081   testis specific protein, Y-linked 3 
TSPY2                 0.081   testis specific protein, Y-linked 2 
LOC100291283          0.038   PREDICTED: hypothetical protein XP_002348282 
PPIL3                 0.034   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
TSPYL2                0.025   TSPY-like 2 
RPP30                 0.025   ribonuclease P/MRP 30kDa subunit isoform a 
TSPYL4                0.025   TSPY-like 4 
C16orf89              0.020   hypothetical protein LOC146556 isoform 1 
RUNDC2B               0.020   RUN domain containing 2B 
TSPYL5                0.020   TSPY-like 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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