Guide to the Human Genome
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Name: LOC100290384 Sequence: fasta or formatted (140aa) NCBI GI: 239752473
Description:

PREDICTED: hypothetical protein XP_002348288

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7          8           1
 C cysteine            2.9          4           1
 D aspartate           3.6          5           1
 E glutamate           4.3          6           1
 F phenylalanine       5.0          7           1
 G glycine             7.1         10           2
 H histidine           6.4          9           2
 I isoleucine          4.3          6           2
 K lysine              2.9          4           2
 L leucine             7.1         10           2
 M methionine          3.6          5           2
 N asparagine          4.3          6           1
 P proline             2.9          4           2
 Q glutamine           4.3          6           1
 R arginine            6.4          9           2
 S serine             10.0         14           2
 T threonine           4.3          6           1
 V valine              6.4          9           1
 W tryptophan          3.6          5           1
 Y tyrosine            5.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348288 
LOC100292671          1.000   PREDICTED: similar to CYorf16 protein 
LOC100288465          0.874   PREDICTED: hypothetical protein XP_002343910 
LOC100289265          0.601   PREDICTED: hypothetical protein 
LOC100289265          0.601   PREDICTED: hypothetical protein XP_002344242 
LOC100289188          0.579   PREDICTED: hypothetical protein XP_002344241 
LOC100289150          0.579   PREDICTED: hypothetical protein XP_002344240 
LOC100287859          0.579   PREDICTED: hypothetical protein XP_002344483 
LOC100287826          0.579   PREDICTED: hypothetical protein XP_002344482 
LOC100287798          0.579   PREDICTED: hypothetical protein XP_002344481 
LOC100132506          0.565   PREDICTED: similar to CYorf16 protein 
LOC100292670          0.536   PREDICTED: similar to CYorf16 protein 
LOC100132932          0.507   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.457   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.457   PREDICTED: hypothetical protein 
LOC728403             0.147   PREDICTED: similar to Testis-specific Y-encoded pro...
TSPY2                 0.147   testis specific protein, Y-linked 2 
LOC100289087          0.144   PREDICTED: hypothetical protein XP_002344239 
LOC728132             0.144   PREDICTED: similar to testis specific protein, Y-li...
LOC728395             0.144   PREDICTED: similar to testis specific protein, Y-li...
TSPY3                 0.144   testis specific protein, Y-linked 3 
TSPY1                 0.144   testis specific protein, Y-linked 1 
TSPYL1                0.079   TSPY-like 1 
RUNDC2B               0.079   RUN domain containing 2B 
TSPYL2                0.076   TSPY-like 2 
TSPYL5                0.076   TSPY-like 5 
TSPYL4                0.076   TSPY-like 4 
PPIL3                 0.068   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
RPP30                 0.061   ribonuclease P/MRP 30kDa subunit isoform a 
CSF2RA                0.061   colony stimulating factor 2 receptor alpha chain is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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