Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100287798 Sequence: fasta or formatted (145aa) NCBI GI: 239746994
Description:

PREDICTED: hypothetical protein XP_002344481

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         11           2
 C cysteine            4.8          7           1
 D aspartate           2.8          4           1
 E glutamate           4.8          7           1
 F phenylalanine       3.4          5           1
 G glycine             6.9         10           2
 H histidine           5.5          8           1
 I isoleucine          4.8          7           2
 K lysine              2.8          4           1
 L leucine             9.7         14           2
 M methionine          2.8          4           1
 N asparagine          1.4          2           1
 P proline             4.1          6           2
 Q glutamine           4.8          7           1
 R arginine            5.5          8           1
 S serine             12.4         18           2
 T threonine           2.8          4           1
 V valine              6.9         10           1
 W tryptophan          2.8          4           1
 Y tyrosine            3.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344481 
LOC100289188          1.000   PREDICTED: hypothetical protein XP_002344241 
LOC100289150          1.000   PREDICTED: hypothetical protein XP_002344240 
LOC100287859          1.000   PREDICTED: hypothetical protein XP_002344483 
LOC100287826          1.000   PREDICTED: hypothetical protein XP_002344482 
LOC100132506          0.954   PREDICTED: similar to CYorf16 protein 
LOC100289265          0.890   PREDICTED: hypothetical protein 
LOC100289265          0.890   PREDICTED: hypothetical protein XP_002344242 
LOC100132932          0.801   PREDICTED: similar to CYorf16 protein 
LOC100292670          0.708   PREDICTED: similar to CYorf16 protein 
LOC100292671          0.573   PREDICTED: similar to CYorf16 protein 
LOC100290384          0.573   PREDICTED: hypothetical protein XP_002348288 
LOC100288465          0.520   PREDICTED: hypothetical protein XP_002343910 
LOC100130208          0.470   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.470   PREDICTED: hypothetical protein 
LOC728403             0.128   PREDICTED: similar to Testis-specific Y-encoded pro...
LOC100289087          0.125   PREDICTED: hypothetical protein XP_002344239 
LOC728132             0.125   PREDICTED: similar to testis specific protein, Y-li...
LOC728395             0.125   PREDICTED: similar to testis specific protein, Y-li...
TSPY3                 0.125   testis specific protein, Y-linked 3 
TSPY1                 0.121   testis specific protein, Y-linked 1 
TSPY2                 0.121   testis specific protein, Y-linked 2 
LOC100291283          0.071   PREDICTED: hypothetical protein XP_002348282 
PPIL3                 0.050   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
TSPYL2                0.050   TSPY-like 2 
TSPYL1                0.046   TSPY-like 1 
RPP30                 0.036   ribonuclease P/MRP 30kDa subunit isoform a 
C16orf89              0.036   hypothetical protein LOC146556 isoform 1 
TSPYL6                0.036   TSPY-like 6 
TSPYL5                0.036   TSPY-like 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press