Guide to the Human Genome
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Name: LOC100132506 Sequence: fasta or formatted (152aa) NCBI GI: 169217429
Description:

PREDICTED: similar to CYorf16 protein

Referenced in:

Y-linked Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         11           2
 C cysteine            5.3          8           1
 D aspartate           2.6          4           1
 E glutamate           5.3          8           1
 F phenylalanine       3.3          5           1
 G glycine             6.6         10           2
 H histidine           5.3          8           1
 I isoleucine          4.6          7           2
 K lysine              2.6          4           1
 L leucine             7.9         12           2
 M methionine          2.6          4           1
 N asparagine          1.3          2           1
 P proline             4.6          7           2
 Q glutamine           4.6          7           1
 R arginine            5.9          9           1
 S serine             13.2         20           2
 T threonine           2.6          4           1
 V valine              7.9         12           1
 W tryptophan          3.3          5           1
 Y tyrosine            3.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to CYorf16 protein 
LOC100289188          0.899   PREDICTED: hypothetical protein XP_002344241 
LOC100289150          0.899   PREDICTED: hypothetical protein XP_002344240 
LOC100287859          0.899   PREDICTED: hypothetical protein XP_002344483 
LOC100287826          0.899   PREDICTED: hypothetical protein XP_002344482 
LOC100287798          0.899   PREDICTED: hypothetical protein XP_002344481 
LOC100289265          0.805   PREDICTED: hypothetical protein 
LOC100289265          0.805   PREDICTED: hypothetical protein XP_002344242 
LOC100132932          0.758   PREDICTED: similar to CYorf16 protein 
LOC100292670          0.658   PREDICTED: similar to CYorf16 protein 
LOC100292671          0.527   PREDICTED: similar to CYorf16 protein 
LOC100290384          0.527   PREDICTED: hypothetical protein XP_002348288 
LOC100288465          0.473   PREDICTED: hypothetical protein XP_002343910 
LOC100130208          0.440   PREDICTED: similar to CYorf16 protein 
LOC100130208          0.440   PREDICTED: hypothetical protein 
LOC728403             0.114   PREDICTED: similar to Testis-specific Y-encoded pro...
TSPY1                 0.114   testis specific protein, Y-linked 1 
LOC100289087          0.114   PREDICTED: hypothetical protein XP_002344239 
LOC728132             0.114   PREDICTED: similar to testis specific protein, Y-li...
LOC728395             0.114   PREDICTED: similar to testis specific protein, Y-li...
TSPY3                 0.114   testis specific protein, Y-linked 3 
TSPY2                 0.114   testis specific protein, Y-linked 2 
LOC100291283          0.067   PREDICTED: hypothetical protein XP_002348282 
PPIL3                 0.047   peptidylprolyl isomerase-like 3 isoform PPIL3a [Homo...
TSPYL2                0.047   TSPY-like 2 
TSPYL1                0.040   TSPY-like 1 
RPP30                 0.034   ribonuclease P/MRP 30kDa subunit isoform a 
C16orf89              0.034   hypothetical protein LOC146556 isoform 1 
TSPYL6                0.030   TSPY-like 6 
RUNDC2B               0.027   RUN domain containing 2B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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