Guide to the Human Genome
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Name: LOC644717 Sequence: fasta or formatted (944aa) NCBI GI: 239752427
Description:

PREDICTED: SAGE1-like protein-like

Not currently referenced in the text

Other entries for this name:
alt prot {990aa} PREDICTED: SAGE1-like protein-like
alt mRNA {944aa} PREDICTED: SAGE1-like protein-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         76           3
 C cysteine            1.6         15           1
 D aspartate           5.1         48           1
 E glutamate           6.5         61           3
 F phenylalanine       2.4         23           2
 G glycine             3.6         34           1
 H histidine           3.6         34           1
 I isoleucine          5.4         51           2
 K lysine              4.3         41           2
 L leucine             7.3         69           2
 M methionine          3.9         37           1
 N asparagine          7.5         71           2
 P proline             6.4         60           2
 Q glutamine           5.7         54           2
 R arginine            4.1         39           2
 S serine              7.0         66           3
 T threonine           7.8         74           1
 V valine              6.6         62           2
 W tryptophan          0.5          5           1
 Y tyrosine            2.5         24           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: SAGE1-like protein-like 
LOC644717             1.000   PREDICTED: SAGE1-like protein-like 
LOC644717             0.984   PREDICTED: SAGE1-like protein-like 
SAGE1                 0.287   sarcoma antigen 1 
DDX26B                0.094   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B [Ho...
CT45A5                0.032   cancer/testis antigen family 45, member A5 
CT45A6                0.031   PREDICTED: cancer/testis antigen family 45, member ...
LOC100133581          0.031   PREDICTED: similar to integrator complex subunit 6 ...
CT45A1                0.030   cancer/testis antigen family 45, member A1 
CT45A3                0.030   cancer/testis antigen family 45, member A3 
CT45A4                0.030   cancer/testis antigen family 45, member A4 
CT45A2                0.030   cancer/testis antigen CT45 
CT45A6                0.030   cancer/testis antigen family 45, member A6 
INTS6                 0.025   integrator complex subunit 6 isoform b 
INTS6                 0.025   integrator complex subunit 6 isoform a 
TAF4                  0.008   TBP-associated factor 4 
LOC100131514          0.007   PREDICTED: similar to hCG1747327, partial 
MLL3                  0.004   myeloid/lymphoid or mixed-lineage leukemia 3 
SGOL2                 0.004   shugoshin-like 2 isoform 2 
SGOL2                 0.004   shugoshin-like 2 isoform 1 
SGOL2                 0.004   shugoshin-like 2 isoform 3 
SHKBP1                0.004   SH3KBP1 binding protein 1 
UPF2                  0.004   UPF2 regulator of nonsense transcripts homolog [Homo...
UPF2                  0.004   UPF2 regulator of nonsense transcripts homolog [Homo...
XRN1                  0.003   5'-3' exoribonuclease 1 isoform b 
XRN1                  0.003   5'-3' exoribonuclease 1 isoform a 
NFAT5                 0.003   nuclear factor of activated T-cells 5 isoform a [Hom...
NFAT5                 0.003   nuclear factor of activated T-cells 5 isoform c [Homo...
NFAT5                 0.003   nuclear factor of activated T-cells 5 isoform d [Ho...
NFAT5                 0.003   nuclear factor of activated T-cells 5 isoform b [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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