Guide to the Human Genome
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Name: CT45A2 Sequence: fasta or formatted (189aa) NCBI GI: 124486720
Description:

cancer/testis antigen CT45

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         13           2
 C cysteine            2.1          4           1
 D aspartate           6.3         12           2
 E glutamate           6.9         13           1
 F phenylalanine       4.2          8           2
 G glycine             6.3         12           2
 H histidine           1.1          2           1
 I isoleucine          4.8          9           2
 K lysine             12.2         23           3
 L leucine             5.8         11           2
 M methionine          4.8          9           2
 N asparagine          1.6          3           1
 P proline             4.8          9           2
 Q glutamine           5.3         10           2
 R arginine            7.9         15           2
 S serine              8.5         16           2
 T threonine           4.2          8           1
 V valine              5.3         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cancer/testis antigen CT45 
CT45A3                0.994   cancer/testis antigen family 45, member A3 
CT45A4                0.994   cancer/testis antigen family 45, member A4 
CT45A6                0.994   cancer/testis antigen family 45, member A6 
CT45A1                0.989   cancer/testis antigen family 45, member A1 
CT45A5                0.949   cancer/testis antigen family 45, member A5 
LOC100133581          0.846   PREDICTED: similar to integrator complex subunit 6 ...
CT45A6                0.812   PREDICTED: cancer/testis antigen family 45, member ...
DDX26B                0.282   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B [Ho...
SAGE1                 0.211   sarcoma antigen 1 
LOC644717             0.160   PREDICTED: SAGE1-like protein-like 
LOC644717             0.160   PREDICTED: SAGE1-like protein-like 
LOC644717             0.148   PREDICTED: SAGE1-like protein-like 
INTS6                 0.100   integrator complex subunit 6 isoform b 
INTS6                 0.100   integrator complex subunit 6 isoform a 
HGD                   0.026   homogentisate 1,2-dioxygenase 
CCNB3                 0.026   cyclin B3 isoform 3 
PCNX                  0.020   pecanex-like 1 
MCM4                  0.020   minichromosome maintenance complex component 4 [Homo...
MCM4                  0.020   minichromosome maintenance complex component 4 [Homo...
AKAP13                0.020   A-kinase anchor protein 13 isoform 1 
AKAP13                0.020   A-kinase anchor protein 13 isoform 3 
AKAP13                0.020   A-kinase anchor protein 13 isoform 2 
DDX21                 0.020   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
GBP5                  0.017   guanylate-binding protein 5 
GBP5                  0.017   guanylate-binding protein 5 
CAST                  0.014   calpastatin isoform j 
CAST                  0.014   calpastatin isoform i 
CAST                  0.014   calpastatin isoform h 
CAST                  0.014   calpastatin isoform g 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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