Guide to the Human Genome
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Name: CT45A6 Sequence: fasta or formatted (182aa) NCBI GI: 239757918
Description:

PREDICTED: cancer/testis antigen family 45, member A6

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [189aa] cancer/testis antigen family 45, member A6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         13           2
 C cysteine            2.7          5           1
 D aspartate           6.0         11           2
 E glutamate           6.6         12           1
 F phenylalanine       4.4          8           2
 G glycine             8.2         15           2
 H histidine           0.5          1           1
 I isoleucine          6.0         11           2
 K lysine              9.3         17           2
 L leucine             4.9          9           2
 M methionine          3.3          6           2
 N asparagine          2.2          4           1
 P proline             5.5         10           2
 Q glutamine           6.0         11           2
 R arginine            6.6         12           1
 S serine              7.7         14           2
 T threonine           4.4          8           1
 V valine              6.6         12           2
 W tryptophan          0.5          1           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: cancer/testis antigen family 45, member ... 
LOC100133581          0.953   PREDICTED: similar to integrator complex subunit 6 ...
CT45A5                0.895   cancer/testis antigen family 45, member A5 
CT45A2                0.833   cancer/testis antigen CT45 
CT45A4                0.830   cancer/testis antigen family 45, member A4 
CT45A6                0.830   cancer/testis antigen family 45, member A6 
CT45A3                0.827   cancer/testis antigen family 45, member A3 
CT45A1                0.827   cancer/testis antigen family 45, member A1 
DDX26B                0.275   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B [Ho...
SAGE1                 0.196   sarcoma antigen 1 
LOC644717             0.170   PREDICTED: SAGE1-like protein-like 
LOC644717             0.170   PREDICTED: SAGE1-like protein-like 
LOC644717             0.158   PREDICTED: SAGE1-like protein-like 
INTS6                 0.108   integrator complex subunit 6 isoform b 
INTS6                 0.108   integrator complex subunit 6 isoform a 
LUZP1                 0.020   leucine zipper protein 1 
LUZP1                 0.020   leucine zipper protein 1 
MCM4                  0.012   minichromosome maintenance complex component 4 [Homo...
MCM4                  0.012   minichromosome maintenance complex component 4 [Homo...
MS4A14                0.012   membrane-spanning 4-domains, subfamily A, member 14...
MS4A14                0.012   membrane-spanning 4-domains, subfamily A, member 14...
CCNB3                 0.009   cyclin B3 isoform 3 
MAPKBP1               0.009   mitogen-activated protein kinase binding protein 1 ...
MAPKBP1               0.009   mitogen-activated protein kinase binding protein 1 ...
FAM190B               0.009   granule cell antiserum positive 14 
C7                    0.009   complement component 7 precursor 
GJA9                  0.009   gap junction protein, alpha 9, 59kDa 
ECT2L                 0.009   epithelial cell transforming sequence 2 oncogene-li...
MX1                   0.006   myxovirus resistance protein 1 
MX1                   0.006   myxovirus resistance protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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