Guide to the Human Genome
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Name: CT45A1 Sequence: fasta or formatted (189aa) NCBI GI: 62899069
Description:

cancer/testis antigen family 45, member A1

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         14           2
 C cysteine            2.1          4           1
 D aspartate           6.3         12           2
 E glutamate           6.3         12           1
 F phenylalanine       4.2          8           2
 G glycine             6.3         12           2
 H histidine           1.1          2           1
 I isoleucine          4.8          9           2
 K lysine             12.2         23           3
 L leucine             5.8         11           2
 M methionine          4.8          9           2
 N asparagine          1.6          3           1
 P proline             4.8          9           2
 Q glutamine           4.8          9           1
 R arginine            8.5         16           2
 S serine              8.5         16           2
 T threonine           4.2          8           1
 V valine              5.3         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cancer/testis antigen family 45, member A1 
CT45A4                0.997   cancer/testis antigen family 45, member A4 
CT45A6                0.997   cancer/testis antigen family 45, member A6 
CT45A3                0.997   cancer/testis antigen family 45, member A3 
CT45A2                0.991   cancer/testis antigen CT45 
CT45A5                0.940   cancer/testis antigen family 45, member A5 
LOC100133581          0.837   PREDICTED: similar to integrator complex subunit 6 ...
CT45A6                0.809   PREDICTED: cancer/testis antigen family 45, member ...
DDX26B                0.277   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B [Ho...
SAGE1                 0.211   sarcoma antigen 1 
LOC644717             0.160   PREDICTED: SAGE1-like protein-like 
LOC644717             0.160   PREDICTED: SAGE1-like protein-like 
LOC644717             0.149   PREDICTED: SAGE1-like protein-like 
INTS6                 0.100   integrator complex subunit 6 isoform b 
INTS6                 0.100   integrator complex subunit 6 isoform a 
HGD                   0.026   homogentisate 1,2-dioxygenase 
CCNB3                 0.023   cyclin B3 isoform 3 
AKAP13                0.023   A-kinase anchor protein 13 isoform 1 
AKAP13                0.023   A-kinase anchor protein 13 isoform 3 
AKAP13                0.023   A-kinase anchor protein 13 isoform 2 
GBP5                  0.020   guanylate-binding protein 5 
GBP5                  0.020   guanylate-binding protein 5 
MCM4                  0.017   minichromosome maintenance complex component 4 [Homo...
MCM4                  0.017   minichromosome maintenance complex component 4 [Homo...
DDX21                 0.014   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
BAZ1A                 0.014   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.014   bromodomain adjacent to zinc finger domain, 1A isofo...
ZFC3H1                0.011   proline/serine-rich coiled-coil 2 
ZNF44                 0.009   zinc finger protein 44 
FAM184B               0.009   hypothetical protein LOC27146 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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