Guide to the Human Genome
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Name: INTS6 Sequence: fasta or formatted (874aa) NCBI GI: 90193622
Description:

integrator complex subunit 6 isoform b

Referenced in:

DEAD / H Helicase Family
Polyadenylation

Other entries for this name:
alt prot [887aa] integrator complex subunit 6 isoform a
alt prot [115aa] integrator complex subunit 6 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         39           1
 C cysteine            1.3         11           1
 D aspartate           5.0         44           2
 E glutamate           6.2         54           2
 F phenylalanine       3.5         31           2
 G glycine             5.8         51           2
 H histidine           3.2         28           1
 I isoleucine          4.5         39           3
 K lysine              6.6         58           2
 L leucine            10.9         95           2
 M methionine          3.0         26           2
 N asparagine          5.1         45           2
 P proline             8.0         70           2
 Q glutamine           5.1         45           2
 R arginine            5.8         51           3
 S serine              7.0         61           2
 T threonine           5.4         47           3
 V valine              5.5         48           2
 W tryptophan          0.8          7           1
 Y tyrosine            2.7         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrator complex subunit 6 isoform b 
INTS6                 1.000   integrator complex subunit 6 isoform a 
DDX26B                0.614   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26B [Ho...
INTS6                 0.102   integrator complex subunit 6 isoform c 
SAGE1                 0.032   sarcoma antigen 1 
LOC644717             0.027   PREDICTED: SAGE1-like protein-like 
LOC644717             0.027   PREDICTED: SAGE1-like protein-like 
LOC644717             0.026   PREDICTED: SAGE1-like protein-like 
CT45A5                0.023   cancer/testis antigen family 45, member A5 
CT45A6                0.021   PREDICTED: cancer/testis antigen family 45, member ...
LOC100133581          0.020   PREDICTED: similar to integrator complex subunit 6 ...
CT45A4                0.020   cancer/testis antigen family 45, member A4 
CT45A2                0.020   cancer/testis antigen CT45 
CT45A6                0.020   cancer/testis antigen family 45, member A6 
CT45A1                0.020   cancer/testis antigen family 45, member A1 
CT45A3                0.020   cancer/testis antigen family 45, member A3 
STK10                 0.007   serine/threonine kinase 10 
COL16A1               0.007   alpha 1 type XVI collagen precursor 
CCDC66                0.006   coiled-coil domain containing 66 isoform 1 
CCDC66                0.006   coiled-coil domain containing 66 isoform 2 
GAS8                  0.006   growth arrest-specific 8 
ERF                   0.006   Ets2 repressor factor 
DST                   0.006   dystonin isoform 1eB precursor 
COL4A2                0.005   alpha 2 type IV collagen preproprotein 
DMBX1                 0.005   diencephalon/mesencephalon homeobox 1 isoform b [Hom...
MTF1                  0.004   metal-regulatory transcription factor 1 
MYO7B                 0.004   myosin VIIB 
PRR12                 0.004   proline rich 12 
WDHD1                 0.003   WD repeat and HMG-box DNA binding protein 1 isoform ...
WDHD1                 0.003   WD repeat and HMG-box DNA binding protein 1 isoform 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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