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Search of human proteins with 239752388
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752388 PREDICTED: novel protein similar to chondroitin
sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757870 PREDICTED: novel protein similar to chondroitin sul... 303 2e-83
gi|239752388 PREDICTED: novel protein similar to chondroitin sul... 303 2e-83
gi|239746905 PREDICTED: novel protein similar to chondroitin sul... 303 2e-83
gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferas... 195 9e-51
gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransfera... 154 3e-38
gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransfera... 154 3e-38
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens] 69 1e-12
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens] 62 2e-10
gi|27545323 chondroitin polymerizing factor [Homo sapiens] 38 0.002
gi|116812614 glycerol-3-phosphate acyltransferase 2, mitochondri... 29 1.1
gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 29 1.1
gi|60498976 N-acetylgalactosaminyltransferase 14 [Homo sapiens] 29 1.5
gi|74271845 alpha-2-macroglobulin-like 1 [Homo sapiens] 29 1.5
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 28 2.6
gi|209862859 DEP domain containing 5 isoform 3 [Homo sapiens] 28 2.6
gi|55749924 DEP domain containing 5 isoform 2 [Homo sapiens] 28 2.6
gi|7662222 DEP domain containing 5 isoform 1 [Homo sapiens] 28 2.6
gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3 ... 28 3.3
gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1... 27 7.4
gi|83367077 mucin 16 [Homo sapiens] 26 9.7
gi|153266878 polypeptide N-acetylgalactosaminyltransferase 3 [Ho... 26 9.7
gi|119120894 Dmx-like 2 [Homo sapiens] 26 9.7
gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4... 26 9.7
gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4 ... 26 9.7
>gi|239757870 PREDICTED: novel protein similar to chondroitin
sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
Length = 142
Score = 303 bits (777), Expect = 2e-83
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MASVKMSMSTKHVKDLAMGTREKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDV 60
MASVKMSMSTKHVKDLAMGTREKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDV
Sbjct: 1 MASVKMSMSTKHVKDLAMGTREKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDV 60
Query: 61 HLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHLGMLV 120
HLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHLGMLV
Sbjct: 61 HLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHLGMLV 120
Query: 121 FREEIETHLHKQAYRTNSEAVG 142
FREEIETHLHKQAYRTNSEAVG
Sbjct: 121 FREEIETHLHKQAYRTNSEAVG 142
>gi|239752388 PREDICTED: novel protein similar to chondroitin
sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
Length = 142
Score = 303 bits (777), Expect = 2e-83
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MASVKMSMSTKHVKDLAMGTREKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDV 60
MASVKMSMSTKHVKDLAMGTREKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDV
Sbjct: 1 MASVKMSMSTKHVKDLAMGTREKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDV 60
Query: 61 HLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHLGMLV 120
HLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHLGMLV
Sbjct: 61 HLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHLGMLV 120
Query: 121 FREEIETHLHKQAYRTNSEAVG 142
FREEIETHLHKQAYRTNSEAVG
Sbjct: 121 FREEIETHLHKQAYRTNSEAVG 142
>gi|239746905 PREDICTED: novel protein similar to chondroitin
sulfate GalNAcT-2 (GALNACT-2) [Homo sapiens]
Length = 142
Score = 303 bits (777), Expect = 2e-83
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MASVKMSMSTKHVKDLAMGTREKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDV 60
MASVKMSMSTKHVKDLAMGTREKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDV
Sbjct: 1 MASVKMSMSTKHVKDLAMGTREKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDV 60
Query: 61 HLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHLGMLV 120
HLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHLGMLV
Sbjct: 61 HLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHLGMLV 120
Query: 121 FREEIETHLHKQAYRTNSEAVG 142
FREEIETHLHKQAYRTNSEAVG
Sbjct: 121 FREEIETHLHKQAYRTNSEAVG 142
>gi|24429592 chondroitin sulfate N-acetylgalactosaminyltransferase 2
[Homo sapiens]
Length = 542
Score = 195 bits (496), Expect = 9e-51
Identities = 91/96 (94%), Positives = 92/96 (95%)
Query: 47 GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106
GFDMEVKGWGGEDVHLYRKYL GDLIVIR PVPGLFHLWHEK CADELTPEQYRMCIQSK
Sbjct: 447 GFDMEVKGWGGEDVHLYRKYLHGDLIVIRTPVPGLFHLWHEKRCADELTPEQYRMCIQSK 506
Query: 107 AMDEASRSHLGMLVFREEIETHLHKQAYRTNSEAVG 142
AM+EAS SHLGMLVFREEIETHLHKQAYRTNSEAVG
Sbjct: 507 AMNEASHSHLGMLVFREEIETHLHKQAYRTNSEAVG 542
>gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransferase
1 [Homo sapiens]
Length = 532
Score = 154 bits (388), Expect = 3e-38
Identities = 68/93 (73%), Positives = 79/93 (84%)
Query: 47 GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106
GFD+++KGWGGEDVHLYRKYL +LIV+R PV GLFHLWHEK C DELTPEQY+MC+QSK
Sbjct: 438 GFDLDIKGWGGEDVHLYRKYLHSNLIVVRTPVRGLFHLWHEKRCMDELTPEQYKMCMQSK 497
Query: 107 AMDEASRSHLGMLVFREEIETHLHKQAYRTNSE 139
AM+EAS LGMLVFR EIE HL KQ +T+S+
Sbjct: 498 AMNEASHGQLGMLVFRHEIEAHLRKQKQKTSSK 530
>gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransferase
1 [Homo sapiens]
Length = 532
Score = 154 bits (388), Expect = 3e-38
Identities = 68/93 (73%), Positives = 79/93 (84%)
Query: 47 GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106
GFD+++KGWGGEDVHLYRKYL +LIV+R PV GLFHLWHEK C DELTPEQY+MC+QSK
Sbjct: 438 GFDLDIKGWGGEDVHLYRKYLHSNLIVVRTPVRGLFHLWHEKRCMDELTPEQYKMCMQSK 497
Query: 107 AMDEASRSHLGMLVFREEIETHLHKQAYRTNSE 139
AM+EAS LGMLVFR EIE HL KQ +T+S+
Sbjct: 498 AMNEASHGQLGMLVFRHEIEAHLRKQKQKTSSK 530
>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
Length = 882
Score = 68.9 bits (167), Expect = 1e-12
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 47 GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106
GFD ++GWG EDV LY K + L R+ G+ H++H HC L P+QY+MC+ SK
Sbjct: 795 GFDTSIQGWGLEDVDLYNKVILSGLRPFRSQEVGVVHIFHPVHCDPNLDPKQYKMCLGSK 854
Query: 107 AMDEASRSHLGMLVFREEIETHLHKQAYRTNS 138
A AS L L +E HL + RT S
Sbjct: 855 ASTFASTMQLAEL----WLEKHLGVRYNRTLS 882
>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
Length = 802
Score = 61.6 bits (148), Expect = 2e-10
Identities = 28/70 (40%), Positives = 40/70 (57%)
Query: 47 GFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSK 106
GFD+ ++GWG EDV L+ K ++ L R+ G+ H+ H C L P+QY+MC+ SK
Sbjct: 708 GFDVSIQGWGLEDVDLFNKVVQAGLKTFRSQEVGVVHVHHPVFCDPNLDPKQYKMCLGSK 767
Query: 107 AMDEASRSHL 116
A S L
Sbjct: 768 ASTYGSTQQL 777
>gi|27545323 chondroitin polymerizing factor [Homo sapiens]
Length = 775
Score = 38.1 bits (87), Expect = 0.002
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 58 EDVHLYRKYLR-GDLIVIRNPVPGLFHLWHEKHCADELTPEQYRMCIQSKAMDEASRSHL 116
E + +Y +L L V+R P L + + C+ L+ + Y C+QS SR+ L
Sbjct: 703 ESLDVYELFLHFSSLHVLRAVEPALLQRYRAQTCSARLSEDLYHRCLQSVLEGLGSRTQL 762
Query: 117 GMLVFREE 124
ML+F +E
Sbjct: 763 AMLLFEQE 770
>gi|116812614 glycerol-3-phosphate acyltransferase 2, mitochondrial
[Homo sapiens]
Length = 795
Score = 29.3 bits (64), Expect = 1.1
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 8 MSTKHVKDLAMGTREKL-GCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDVHLYRKY 66
MST + L + +KL G F W + L+ + +GF +++ + L R +
Sbjct: 461 MSTAIMATLLLFKHQKLLGEFSWLTEEILLRGFD-----VGFSGQLRSLLQHSLSLLRAH 515
Query: 67 L------RGDLIVIRNPVPGLFHL 84
+ +GDL+V+ P PGL HL
Sbjct: 516 VALLRIRQGDLLVVPQPGPGLTHL 539
>gi|71043500 beta 1,4-N-acetylgalactosaminyltransferase-transferase
3 [Homo sapiens]
Length = 998
Score = 29.3 bits (64), Expect = 1.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 55 WGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEK 88
WGGED L + L+ L V R + FH +H K
Sbjct: 953 WGGEDWELLDRILQAGLDVERLSLRNFFHHFHSK 986
>gi|60498976 N-acetylgalactosaminyltransferase 14 [Homo sapiens]
Length = 552
Score = 28.9 bits (63), Expect = 1.5
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 43 FSYIG-FDMEVKGWGGEDVHL-YRKYLRGDLIVIRNPVPGLFHLWHEKH 89
F Y+G +DM++ WGGE+ + +R ++ G + I P + H++ +KH
Sbjct: 292 FDYLGKYDMDMDIWGGENFEISFRVWMCGGSLEI-VPCSRVGHVFRKKH 339
>gi|74271845 alpha-2-macroglobulin-like 1 [Homo sapiens]
Length = 1454
Score = 28.9 bits (63), Expect = 1.5
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 48 FDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVP 79
F +E GW G DV L K+ DL+ VP
Sbjct: 401 FTLETSGWNGTDVSLEGKFQMEDLVYNPEQVP 432
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase 4
[Homo sapiens]
Length = 1039
Score = 28.1 bits (61), Expect = 2.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 55 WGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEK 88
WGGED L + L+ L V R + +H +H K
Sbjct: 989 WGGEDWELLDRVLQAGLEVERLRLRNFYHHYHSK 1022
>gi|209862859 DEP domain containing 5 isoform 3 [Homo sapiens]
Length = 1594
Score = 28.1 bits (61), Expect = 2.6
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 22 EKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDVHLYRKYLRGDLI---VIRNPV 78
EK+ C + D +V YI M + W D +Y GDL + +
Sbjct: 149 EKVMCGYISEDTRVVFRSTSAMVYIFIQMSCEMW---DFDIY-----GDLYFEKAVNGFL 200
Query: 79 PGLFHLWHEKHCADELTPEQY-RMCIQSKAMDE 110
LF W EK+C+ E+T + R +K++DE
Sbjct: 201 ADLFTKWKEKNCSHEVTVVLFSRTFYDAKSVDE 233
>gi|55749924 DEP domain containing 5 isoform 2 [Homo sapiens]
Length = 559
Score = 28.1 bits (61), Expect = 2.6
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 22 EKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDVHLYRKYLRGDLI---VIRNPV 78
EK+ C + D +V YI M + W D +Y GDL + +
Sbjct: 149 EKVMCGYISEDTRVVFRSTSAMVYIFIQMSCEMW---DFDIY-----GDLYFEKAVNGFL 200
Query: 79 PGLFHLWHEKHCADELTPEQY-RMCIQSKAMDE 110
LF W EK+C+ E+T + R +K++DE
Sbjct: 201 ADLFTKWKEKNCSHEVTVVLFSRTFYDAKSVDE 233
>gi|7662222 DEP domain containing 5 isoform 1 [Homo sapiens]
Length = 1572
Score = 28.1 bits (61), Expect = 2.6
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 22 EKLGCFQWNADHWLVGPPEMTFSYIGFDMEVKGWGGEDVHLYRKYLRGDLI---VIRNPV 78
EK+ C + D +V YI M + W D +Y GDL + +
Sbjct: 149 EKVMCGYISEDTRVVFRSTSAMVYIFIQMSCEMW---DFDIY-----GDLYFEKAVNGFL 200
Query: 79 PGLFHLWHEKHCADELTPEQY-RMCIQSKAMDE 110
LF W EK+C+ E+T + R +K++DE
Sbjct: 201 ADLFTKWKEKNCSHEVTVVLFSRTFYDAKSVDE 233
>gi|4502349 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 3
[Homo sapiens]
Length = 393
Score = 27.7 bits (60), Expect = 3.3
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 39 PEMTFSYIGFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGLFHLWHEKHCAD---ELT 95
P+ GF E GWGGED + + + + R P + H KH D E
Sbjct: 242 PDQYLKMNGFPNEYWGWGGEDDDIATRVRLAGMKISRPPT-SVGHYKMVKHRGDKGNEEN 300
Query: 96 PEQYRMCIQSK 106
P ++ + ++++
Sbjct: 301 PHRFDLLVRTQ 311
>gi|13929462 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 1,
membrane-bound form [Homo sapiens]
Length = 398
Score = 26.6 bits (57), Expect = 7.4
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 47 GFDMEVKGWGGEDVHLY-RKYLRGDLIVIRNPVPGLFH-LWHEKHCADELTPEQYRMCIQ 104
GF GWGGED ++ R RG I N V G + H + +E P+++
Sbjct: 302 GFPNNYWGWGGEDDDIFNRLVFRGMSISRPNAVVGRCRMIRHSRDKKNEPNPQRFDRIAH 361
Query: 105 SK 106
+K
Sbjct: 362 TK 363
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 26.2 bits (56), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 7 SMSTKHVKDLAMGTREKLGCFQWNADHWLVGPP 39
S TK + +++ T E L F+ N D W V P
Sbjct: 2174 SAGTKLTRTISLPTSESLVSFRMNKDPWTVSIP 2206
>gi|153266878 polypeptide N-acetylgalactosaminyltransferase 3 [Homo
sapiens]
Length = 633
Score = 26.2 bits (56), Expect = 9.7
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 17/100 (17%)
Query: 43 FSYIG-FDMEVKGWGGEDVHL-YRKYLRGDLIVIRNPVPGLFHLWHEKHCADELTPEQYR 100
F YIG +D E++ WGGE++ + +R + G + I P + H++ K +P +
Sbjct: 374 FEYIGSYDEEMEIWGGENIEMSFRVWQCGGQLEIM-PCSVVGHVFRSK------SPHSFP 426
Query: 101 MCIQSKAMDEASRSHLGMLVFREEIETHLHKQAYRTNSEA 140
Q A ++ + + M ++E YR N++A
Sbjct: 427 KGTQVIARNQVRLAEVWMDEYKEIF--------YRRNTDA 458
>gi|119120894 Dmx-like 2 [Homo sapiens]
Length = 3036
Score = 26.2 bits (56), Expect = 9.7
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 70 DLIVIRNPVPGLFHLWHEKHCADELTPEQYR 100
D++ +PV G F +WH K+ DE P +R
Sbjct: 507 DMLFTIHPVDGTFLVWHVKY-LDEYNPGIFR 536
>gi|47078258 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
[Homo sapiens]
Length = 344
Score = 26.2 bits (56), Expect = 9.7
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 40 EMTFSYIGFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGL---FHLWHEKHCADELTP 96
E F GF GWGGED L R + + I P+P + ++H + +E+
Sbjct: 241 EQFFKVNGFSNNYWGWGGEDDDL-RLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNA 299
Query: 97 EQYRMCIQ 104
E+ ++ Q
Sbjct: 300 ERMKLLHQ 307
>gi|9994175 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase 4
[Homo sapiens]
Length = 344
Score = 26.2 bits (56), Expect = 9.7
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 40 EMTFSYIGFDMEVKGWGGEDVHLYRKYLRGDLIVIRNPVPGL---FHLWHEKHCADELTP 96
E F GF GWGGED L R + + I P+P + ++H + +E+
Sbjct: 241 EQFFKVNGFSNNYWGWGGEDDDL-RLRVELQRMKISRPLPEVGKYTMVFHTRDKGNEVNA 299
Query: 97 EQYRMCIQ 104
E+ ++ Q
Sbjct: 300 ERMKLLHQ 307
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,781,234
Number of Sequences: 37866
Number of extensions: 246418
Number of successful extensions: 360
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 24
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.