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Search of human proteins with 239752252
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo
sapiens]
(311 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo ... 635 0.0
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 39 0.005
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.029
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 37 0.029
gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens] 37 0.029
gi|239752827 PREDICTED: hypothetical protein [Homo sapiens] 36 0.038
gi|239747386 PREDICTED: hypothetical protein XP_002346570 [Homo ... 36 0.038
gi|239741211 PREDICTED: hypothetical protein XP_002342098 [Homo ... 36 0.038
gi|148727370 immediate early response 5-like [Homo sapiens] 36 0.050
gi|239757043 PREDICTED: functional smad suppressing element 18 [... 35 0.11
gi|169202970 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 35 0.11
gi|169203510 PREDICTED: hypothetical protein [Homo sapiens] 35 0.11
gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo ... 35 0.11
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 35 0.11
gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo ... 35 0.11
gi|153791535 general control of amino acid synthesis 5-like 2 [H... 35 0.11
gi|19923949 kinesin family member 12 [Homo sapiens] 35 0.11
gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens] 34 0.15
gi|149773484 leucine rich repeat and fibronectin type III domain... 34 0.15
gi|191252814 RIMS binding protein 3B [Homo sapiens] 34 0.19
gi|191252806 RIMS binding protein 3C [Homo sapiens] 34 0.19
gi|169202296 PREDICTED: hypothetical protein [Homo sapiens] 34 0.19
gi|145312251 EPH receptor A6 isoform a [Homo sapiens] 34 0.19
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 34 0.19
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 34 0.19
gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens] 34 0.19
gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens] 34 0.19
gi|4885455 SH2B adaptor protein 3 [Homo sapiens] 33 0.25
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 33 0.25
>gi|239752252 PREDICTED: hypothetical protein XP_002348181 [Homo
sapiens]
Length = 311
Score = 635 bits (1638), Expect = 0.0
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MASHGGNTLEIVQKMGRCRLECGEGLRPCLVDGTVTAAVCLLGGSAPCLQSAPACSVTAS 60
MASHGGNTLEIVQKMGRCRLECGEGLRPCLVDGTVTAAVCLLGGSAPCLQSAPACSVTAS
Sbjct: 1 MASHGGNTLEIVQKMGRCRLECGEGLRPCLVDGTVTAAVCLLGGSAPCLQSAPACSVTAS 60
Query: 61 GRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGDPSAGHRGHSRQQELRTLQEACRE 120
GRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGDPSAGHRGHSRQQELRTLQEACRE
Sbjct: 61 GRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGDPSAGHRGHSRQQELRTLQEACRE 120
Query: 121 RRQGLPSPVTLSLCRGLSRLSRLGLLIAAARVPLSGLRAAPLHVTEVFEGVRGRDGVVLD 180
RRQGLPSPVTLSLCRGLSRLSRLGLLIAAARVPLSGLRAAPLHVTEVFEGVRGRDGVVLD
Sbjct: 121 RRQGLPSPVTLSLCRGLSRLSRLGLLIAAARVPLSGLRAAPLHVTEVFEGVRGRDGVVLD 180
Query: 181 TPPQVLRTGRVVELHQLLAEVVQRESHHVQKVPVYGLHQHAAQGLDPVAASFVPGWAGEE 240
TPPQVLRTGRVVELHQLLAEVVQRESHHVQKVPVYGLHQHAAQGLDPVAASFVPGWAGEE
Sbjct: 181 TPPQVLRTGRVVELHQLLAEVVQRESHHVQKVPVYGLHQHAAQGLDPVAASFVPGWAGEE 240
Query: 241 QLLGQLRELHLRFLVEFRDPGVQLMVCKDTAVGVSVDASLSPPCPDSCVAVLWRCVLERS 300
QLLGQLRELHLRFLVEFRDPGVQLMVCKDTAVGVSVDASLSPPCPDSCVAVLWRCVLERS
Sbjct: 241 QLLGQLRELHLRFLVEFRDPGVQLMVCKDTAVGVSVDASLSPPCPDSCVAVLWRCVLERS 300
Query: 301 AQFRYGCFMGE 311
AQFRYGCFMGE
Sbjct: 301 AQFRYGCFMGE 311
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 39.3 bits (90), Expect = 0.005
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Query: 47 PCLQSAPACSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGDPSAGHRGHS 106
P Q+ + ++TA+ AAPP P ASP ++ A S S S H S
Sbjct: 839 PTRQTPSSAALTAAAVAAPPHCPGGSASPSSS------KASSSSSSSSSPPASLDHEAPS 892
Query: 107 RQQELRTLQEACRERRQGLPSPVTLSLCRGLSRLSRLGLLIAAARVPLSGLRAAPLHV 164
Q+ L AC R LPS ++L R + A R PL+ PLH+
Sbjct: 893 LQE--AALAAACSNRLCKLPSFISLQSSPSPGAQPR----VRAPRAPLTKDSGKPLHI 944
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 36.6 bits (83), Expect = 0.029
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 44 GSAPCLQSAPACSVTASGRAAPPSSPHPGASPPAAGRPLR-ETAESWSPG---QPGGDPS 99
G A +SAP T R+A SS +P + PPA+GR R A++ SPG PG
Sbjct: 66 GGATIPESAPRAGPT---RSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASG 122
Query: 100 AGHRGHSRQQELRTLQEACRERRQGLPSPVTLSLCRGLSR 139
G Q+ LR E R + +P +L G R
Sbjct: 123 TTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARR 162
Score = 29.6 bits (65), Expect = 3.6
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 19/128 (14%)
Query: 52 APACSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGDPSAGHR-------- 103
AP S ++G S P PG PA R R A G P PSA R
Sbjct: 150 APKRSALSAGARRDTSGPTPGTPSPAMAR--RSRAAGTEVGLPRPAPSARPRPPTEGPRK 207
Query: 104 GHSRQQELRTLQEACRERRQ-----GLPSPVTLSLCRGLSRLSRLGLLIAAARVPLSGLR 158
S E T + + RR+ GL P + SL + LS +AR G
Sbjct: 208 SVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSAR----GTP 263
Query: 159 AAPLHVTE 166
AP H ++
Sbjct: 264 RAPAHPSQ 271
Score = 29.3 bits (64), Expect = 4.7
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 46 APCLQSAPACSVTASGRAAPPSSPH----PGASPPAAGRPLR 83
AP +AP V S A+PP SP P A PP A PL+
Sbjct: 470 APPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQ 511
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 36.6 bits (83), Expect = 0.029
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 44 GSAPCLQSAPACSVTASGRAAPPSSPHPGASPPAAGRPLR-ETAESWSPG---QPGGDPS 99
G A +SAP T R+A SS +P + PPA+GR R A++ SPG PG
Sbjct: 66 GGATIPESAPRAGPT---RSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASG 122
Query: 100 AGHRGHSRQQELRTLQEACRERRQGLPSPVTLSLCRGLSR 139
G Q+ LR E R + +P +L G R
Sbjct: 123 TTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARR 162
Score = 31.6 bits (70), Expect = 0.94
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 46 APCLQSAPACSVTASGRAAPPSSPH----PGASPPAAGRPLRETAESWSPGQPGGDPSA 100
AP +AP V S A+PP SP P A PP A PL+ P P PSA
Sbjct: 695 APPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPS--PPASPPMSPSA 751
Score = 29.6 bits (65), Expect = 3.6
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 19/128 (14%)
Query: 52 APACSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGDPSAGHR-------- 103
AP S ++G S P PG PA R R A G P PSA R
Sbjct: 150 APKRSALSAGARRDTSGPTPGTPSPAMAR--RSRAAGTEVGLPRPAPSARPRPPTEGPRK 207
Query: 104 GHSRQQELRTLQEACRERRQ-----GLPSPVTLSLCRGLSRLSRLGLLIAAARVPLSGLR 158
S E T + + RR+ GL P + SL + LS +AR G
Sbjct: 208 SVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSAR----GTP 263
Query: 159 AAPLHVTE 166
AP H ++
Sbjct: 264 RAPAHPSQ 271
>gi|145309322 insulinoma-associated protein IA-6 [Homo sapiens]
Length = 566
Score = 36.6 bits (83), Expect = 0.029
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 22/136 (16%)
Query: 41 LLG--GSAPCLQSAPACSVTASGRAAPPSSPHPG------ASPPAAGRPL---------- 82
LLG G+ P L+ AP+ S+ + RA PP+ PG A+ +G P
Sbjct: 28 LLGPQGAPPFLEEAPSASLPGAERATPPTREEPGKGLTAEAAREQSGSPCRAAGVSPGTG 87
Query: 83 -RETAESWSPGQPGGDPSAGHRGHSRQQELRTLQEACRERRQGLPSPVTL-SLCRGLSRL 140
RE AE + G+ G PS + L+ A ER L SPV+ S G + +
Sbjct: 88 GREGAEWRAGGREGPGPSPSPSPSPAKPAGAELRRAFLER--CLSSPVSAESFPGGAAAV 145
Query: 141 SRLGLLIAAARVPLSG 156
+ +A A P G
Sbjct: 146 AAFSCSVAPAAAPTPG 161
>gi|239752827 PREDICTED: hypothetical protein [Homo sapiens]
Length = 97
Score = 36.2 bits (82), Expect = 0.038
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 45 SAPCLQSAPACSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGD 97
+AP + S SG PP +P G+ P +GRP +A S G+P D
Sbjct: 39 TAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSD 91
>gi|239747386 PREDICTED: hypothetical protein XP_002346570 [Homo
sapiens]
Length = 97
Score = 36.2 bits (82), Expect = 0.038
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 45 SAPCLQSAPACSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGD 97
+AP + S SG PP +P G+ P +GRP +A S G+P D
Sbjct: 39 TAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSD 91
>gi|239741211 PREDICTED: hypothetical protein XP_002342098 [Homo
sapiens]
Length = 97
Score = 36.2 bits (82), Expect = 0.038
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 45 SAPCLQSAPACSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGD 97
+AP + S SG PP +P G+ P +GRP +A S G+P D
Sbjct: 39 TAPPVVSVTETQPPRSGHCHPPQTPAAGSRSPRSGRPSTRSATQLSQGRPQSD 91
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 35.8 bits (81), Expect = 0.050
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 17/85 (20%)
Query: 185 VLRTGRVVELHQLLAEVVQRESHHVQKVPVYGLHQH---AAQGLDPVAASFVP---GWAG 238
VLR R + L + AE+ +R+ Q+ P + HQH AA G+ AA F P G G
Sbjct: 39 VLRNARQLYLSERYAELYRRQQQQQQQQPPHHQHQHLAYAAPGMPASAADFGPLQLGGGG 98
Query: 239 EEQL-----------LGQLRELHLR 252
+ + L QL +LHL+
Sbjct: 99 DAEAREPAARHQLHQLHQLHQLHLQ 123
Score = 35.0 bits (79), Expect = 0.085
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 2 ASHGGNTLEIVQKMGRCRLECGEGLRPCLVDGTVTAAVCLLGGSAPCLQSAPACSVTASG 61
A H G LE +Q G P + AA+C AP SAP + +
Sbjct: 168 APHRGQPLEPLQP--------GPAPLPLPLPPPAPAALCPRDPRAPAACSAPPGAAPPAA 219
Query: 62 RAAPPSSPHPGASP 75
A+PP+SP P +SP
Sbjct: 220 AASPPASPAPASSP 233
Score = 28.5 bits (62), Expect = 8.0
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 47 PCLQSAPACSVTASGRAAPPSSPHPGASPP-AAGRPLRETAESWSPG 92
P APA RA S PGA+PP AA P A + SPG
Sbjct: 188 PLPPPAPAALCPRDPRAPAACSAPPGAAPPAAAASPPASPAPASSPG 234
>gi|239757043 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 996
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 36 TAAVCLLGGSAPCLQSA-----PACSVTASGRAAPP---------SSPHPGASPPAAGRP 81
+A C LG S L+ A S AAPP + P G PPA G
Sbjct: 493 SALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAG 552
Query: 82 LRETAESWSPGQPGGDPSAG 101
R+ PG GGD SAG
Sbjct: 553 SRDALFESPPGGSGGDCSAG 572
>gi|169202970 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 34.7 bits (78), Expect = 0.11
Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 63 AAPPSSPHP-----GASPPAAGRPLRETAESWSPG-----QPGGDPSAGHRGHSRQQELR 112
AAPP PHP G PP AG TA G +PG A SR+ L
Sbjct: 37 AAPPP-PHPLSSRRGLGPPRAGGSPPPTAPPTPTGSFPACRPGARFGAARCHQSRENRLV 95
Query: 113 TLQEACRERRQGLPSP-----VTLSLCRGLSRLSRLGLLIAAARVPLSGLRAAPLHVT 165
+ E+ + LP P + S G + +R AR+ L RAAP HVT
Sbjct: 96 SPAESDKMSGTPLPPPQFSPPLPWSAGAGQGKRNRQLQENGGARLLLGAFRAAPGHVT 153
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 36 TAAVCLLGGSAPCLQSA-----PACSVTASGRAAPP---------SSPHPGASPPAAGRP 81
+A C LG S L+ A S AAPP + P G PPA G
Sbjct: 493 SALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAG 552
Query: 82 LRETAESWSPGQPGGDPSAG 101
R+ PG GGD SAG
Sbjct: 553 SRDALFESPPGGSGGDCSAG 572
>gi|169203510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 34.7 bits (78), Expect = 0.11
Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 63 AAPPSSPHP-----GASPPAAGRPLRETAESWSPG-----QPGGDPSAGHRGHSRQQELR 112
AAPP PHP G PP AG TA G +PG A SR+ L
Sbjct: 37 AAPPP-PHPLSSRRGLGPPRAGGSPPPTAPPTPTGSFPACRPGARFGAARCHQSRENRLV 95
Query: 113 TLQEACRERRQGLPSP-----VTLSLCRGLSRLSRLGLLIAAARVPLSGLRAAPLHVT 165
+ E+ + LP P + S G + +R AR+ L RAAP HVT
Sbjct: 96 SPAESDKMSGTPLPPPQFSPPLPWSAGAGQGKRNRQLQENGGARLLLGAFRAAPGHVT 153
>gi|239747236 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 34.7 bits (78), Expect = 0.11
Identities = 48/151 (31%), Positives = 56/151 (37%), Gaps = 34/151 (22%)
Query: 31 VDGTVTAA-VCLLGGS-APCLQSAPA-------------CSVTASGRAAPPSSPH----- 70
V+G VT + +CL P Q+AP+ S + R PS+P
Sbjct: 8 VNGLVTKSQLCLWSREPVPSRQAAPSKRLESVSFPGAHEMSSRSLARPVSPSAPRSIAPA 67
Query: 71 -PGASPPAAGRPLRETAESWSPGQPGGDPSAGHRGHSRQQELRTLQEACRERR--QGLPS 127
PGA PP GRPL A P HR RQ LR + R RR G
Sbjct: 68 RPGARPPRPGRPLAPRARQPVP----------HRAVPRQGSLREPLPSRRGRRGPPGHAP 117
Query: 128 PVTLSLCRGLSRLSRLGLLIAAARVPLSGLR 158
P RG L A ARVP GLR
Sbjct: 118 PSPSLRRRGARALQPSAAARARARVP-RGLR 147
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 34.7 bits (78), Expect = 0.11
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 36 TAAVCLLGGSAPCLQSA-----PACSVTASGRAAPP---------SSPHPGASPPAAGRP 81
+A C LG S L+ A S AAPP + P G PPA G
Sbjct: 493 SALGCALGESPALLRQAFLDLAEPGGAAGSAEAAPPPGQPPQVVANGPGSGPPPPAGGAG 552
Query: 82 LRETAESWSPGQPGGDPSAG 101
R+ PG GGD SAG
Sbjct: 553 SRDALFESPPGGSGGDCSAG 572
>gi|239741057 PREDICTED: leucine rich repeat containing 38 [Homo
sapiens]
Length = 408
Score = 34.7 bits (78), Expect = 0.11
Identities = 48/151 (31%), Positives = 56/151 (37%), Gaps = 34/151 (22%)
Query: 31 VDGTVTAA-VCLLGGS-APCLQSAPA-------------CSVTASGRAAPPSSPH----- 70
V+G VT + +CL P Q+AP+ S + R PS+P
Sbjct: 8 VNGLVTKSQLCLWSREPVPSRQAAPSKRLESVSFPGAHEMSSRSLARPVSPSAPRSIAPA 67
Query: 71 -PGASPPAAGRPLRETAESWSPGQPGGDPSAGHRGHSRQQELRTLQEACRERR--QGLPS 127
PGA PP GRPL A P HR RQ LR + R RR G
Sbjct: 68 RPGARPPRPGRPLAPRARQPVP----------HRAVPRQGSLREPLPSRRGRRGPPGHAP 117
Query: 128 PVTLSLCRGLSRLSRLGLLIAAARVPLSGLR 158
P RG L A ARVP GLR
Sbjct: 118 PSPSLRRRGARALQPSAAARARARVP-RGLR 147
>gi|153791535 general control of amino acid synthesis 5-like 2 [Homo
sapiens]
Length = 837
Score = 34.7 bits (78), Expect = 0.11
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 52 APACSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPG-GDPSAGHRGHSRQQE 110
+PA + T + +P S+P P +P A P A S G PG G AG G +
Sbjct: 21 SPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGTGGPGVGSGGAGSGGDPARPG 80
Query: 111 LRTLQEACRERRQ--GLP 126
L Q A + + Q GLP
Sbjct: 81 LSQQQRASQRKAQVRGLP 98
>gi|19923949 kinesin family member 12 [Homo sapiens]
Length = 513
Score = 34.7 bits (78), Expect = 0.11
Identities = 26/80 (32%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 45 SAPCLQSAPACSVTASGRAAPPSSPH-PGASPPAA--GRPLRETAESWSPG-QPGGDPSA 100
S PC P C V + A P H P P A GRP W+P PG
Sbjct: 366 SCPCCHICPLCRVPLAHWACLPGEHHLPQVLDPEASGGRPPSARPPPWAPPCSPGSAKCP 425
Query: 101 GHRGHSRQQELRTLQEACRE 120
R HS + R L E E
Sbjct: 426 RERSHSDWTQTRVLAEMLTE 445
>gi|253683544 POM121 membrane glycoprotein-like 2 [Homo sapiens]
Length = 1035
Score = 34.3 bits (77), Expect = 0.15
Identities = 19/63 (30%), Positives = 26/63 (41%)
Query: 46 APCLQSAPACSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGDPSAGHRGH 105
AP Q+ P +G + P P A P R +A S+S G P +GH
Sbjct: 967 APIAQNTPVPGQAKAGSSVGFGMPFPPAQGSVGRGPFRSSASSFSIGAKSKTPKNREKGH 1026
Query: 106 SRQ 108
SR+
Sbjct: 1027 SRR 1029
>gi|149773484 leucine rich repeat and fibronectin type III domain
containing 1 [Homo sapiens]
Length = 771
Score = 34.3 bits (77), Expect = 0.15
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 32 DGTVTAAVCLL--GGSAPCLQSAPACSVTASGRAAPPSSPHPGASPPAAGRPLRETAES- 88
DGT+ + L G+ C+ S A TA P A PPAA PL E S
Sbjct: 352 DGTLDVTITTLRDSGTFTCIASNAAGEATAPVEVCVVPLPLM-APPPAAPPPLTEPGSSD 410
Query: 89 -WSPGQPGGDPSAGHR 103
+PG+PG + SA R
Sbjct: 411 IATPGRPGANDSAAER 426
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 33.9 bits (76), Expect = 0.19
Identities = 45/159 (28%), Positives = 57/159 (35%), Gaps = 34/159 (21%)
Query: 51 SAPACSVTASGRAAPPSSPHPGASPPAAGRPL-RETAESWSPGQPGG--DPSAGHRGHSR 107
S+P S S R +PP SP P PP+A R L S QP PS GH
Sbjct: 313 SSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHE 372
Query: 108 QQELR---------------TLQEACRE-RRQGLPSPVTLSLCR-GLSRLSRLGLL---- 146
+L TLQE ++ RR G P + R + R GL
Sbjct: 373 LIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLA 432
Query: 147 ----------IAAARVPLSGLRAAPLHVTEVFEGVRGRD 175
+ A P+ G A L + +VF R RD
Sbjct: 433 DRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARD 471
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 33.9 bits (76), Expect = 0.19
Identities = 45/159 (28%), Positives = 57/159 (35%), Gaps = 34/159 (21%)
Query: 51 SAPACSVTASGRAAPPSSPHPGASPPAAGRPL-RETAESWSPGQPGG--DPSAGHRGHSR 107
S+P S S R +PP SP P PP+A R L S QP PS GH
Sbjct: 313 SSPDTSTPGSRRLSPPPSPLPPPPPPSAHRKLSNPRGGEGSESQPCEVLTPSPPGLGHHE 372
Query: 108 QQELR---------------TLQEACRE-RRQGLPSPVTLSLCR-GLSRLSRLGLL---- 146
+L TLQE ++ RR G P + R + R GL
Sbjct: 373 LIKLNWLLAKALWVLARRCYTLQEENKQLRRAGCPYQADEKVKRLKVKRAELTGLARRLA 432
Query: 147 ----------IAAARVPLSGLRAAPLHVTEVFEGVRGRD 175
+ A P+ G A L + +VF R RD
Sbjct: 433 DRARELQETNLRAVSAPIPGESCAGLELCQVFARQRARD 471
>gi|169202296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 190
Score = 33.9 bits (76), Expect = 0.19
Identities = 38/118 (32%), Positives = 47/118 (39%), Gaps = 16/118 (13%)
Query: 63 AAPPSSPHP-----GASPPAAGRPLRETAESWSPG-----QPGGDPSAGHRGHSRQQELR 112
AAPP PHP G PP AG TA G +PG A SR+ L
Sbjct: 37 AAPPP-PHPLSSRRGLGPPRAGGSPPPTAPPTPTGSFPACRPGARFGAARCHQSRENRLV 95
Query: 113 TLQEACRERRQGLPSP-----VTLSLCRGLSRLSRLGLLIAAARVPLSGLRAAPLHVT 165
+ E+ + LP P + S G + +R AR+ L RAAP HVT
Sbjct: 96 SPAESDKMSGTPLPPPQFSPPLPGSAGAGQGKRNRQLQENGGARLLLGAFRAAPGHVT 153
>gi|145312251 EPH receptor A6 isoform a [Homo sapiens]
Length = 1130
Score = 33.9 bits (76), Expect = 0.19
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 45 SAPCLQSAPACSVTASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPGGDPSAGHRG 104
S P +S+PA +S AA P++ PG S P G R G+P G P AG
Sbjct: 5 SPPAARSSPAPQAASSSEAAAPATGQPGPSCPVPGTSRR--------GRP-GTPPAGRVE 55
Query: 105 HSRQQE 110
++E
Sbjct: 56 EEEEEE 61
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 33.9 bits (76), Expect = 0.19
Identities = 44/148 (29%), Positives = 60/148 (40%), Gaps = 15/148 (10%)
Query: 1 MASHGGNTLEIVQKMGRCRLECGEGLRPCLVDGTVTAAV--CLLGGSAPCLQS-APACSV 57
+ S T +++ + + RL GL P L+ T A+ L G S P L + A A S
Sbjct: 168 VVSETAATCSVLRLLEQGRLLSPPGL-PALLPPCATGALGSALRGPSLPALGAGAAAGSA 226
Query: 58 TASGRAAPPSSPHPGASPPAAGRPLRETAESWSPGQPG----GDPSAGHRGHSRQQELRT 113
A+ AAP + PPA G A P PG G P+AGH S + +
Sbjct: 227 AAAAAAAPGPAGAASPHPPAVG-----GAPGPGPAGPGGLHAGAPAAGHSLFS--LPVPS 279
Query: 114 LQEACRERRQGLPSPVTLSLCRGLSRLS 141
L + R P + SL L LS
Sbjct: 280 LLGSVASRLSSAPLTMAGSLAGNLQELS 307
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 33.9 bits (76), Expect = 0.19
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 53 PACSVTASGRAAP--PSSPHPGASPPAAGRP-----LRETAESWSPGQP--GGDPSAGHR 103
PA A+G AP P +P P ASP P L E E PG+P GDP+A
Sbjct: 44 PAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAA-P 102
Query: 104 GHSRQQELRTLQE 116
+ +Q + QE
Sbjct: 103 AEAEEQAVEARQE 115
>gi|56549133 transmembrane anchor protein 1 isoform 2 [Homo sapiens]
Length = 177
Score = 33.9 bits (76), Expect = 0.19
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 53 PACSVTASGRAAP--PSSPHPGASPPAAGRP-----LRETAESWSPGQP--GGDPSAGHR 103
PA A+G AP P +P P ASP P L E E PG+P GDP+A
Sbjct: 44 PAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAA-P 102
Query: 104 GHSRQQELRTLQE 116
+ +Q + QE
Sbjct: 103 AEAEEQAVEARQE 115
>gi|56549131 transmembrane anchor protein 1 isoform 1 [Homo sapiens]
Length = 204
Score = 33.9 bits (76), Expect = 0.19
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 53 PACSVTASGRAAP--PSSPHPGASPPAAGRP-----LRETAESWSPGQP--GGDPSAGHR 103
PA A+G AP P +P P ASP P L E E PG+P GDP+A
Sbjct: 44 PAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPGEPEGPGDPAAA-P 102
Query: 104 GHSRQQELRTLQE 116
+ +Q + QE
Sbjct: 103 AEAEEQAVEARQE 115
>gi|4885455 SH2B adaptor protein 3 [Homo sapiens]
Length = 575
Score = 33.5 bits (75), Expect = 0.25
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 52 APACSVTASGRAAPP---SSPHPGASPPAAGRPLRETAESWSPGQPGGDPSAGH 102
AP +GR P +SP PG P A G P ++E +P +P G S H
Sbjct: 84 APGRDYRDTGRGPPAKAEASPEPGPGPAAPGLPKARSSEELAPPRPPGPCSFQH 137
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 33.5 bits (75), Expect = 0.25
Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 27/94 (28%)
Query: 27 RPCLVDGTVTAAVCLLGGSAPCLQSAPACSVTASGRAAPPSSPH--------------PG 72
R C++ G V A C SAPC APA ASGR PP + G
Sbjct: 464 RRCVLLGPVAPAACAPCASAPC---APA--PAASGR--PPRAEELERRALAGAGGVGAAG 516
Query: 73 ASPPAAGRPLR----ETAES--WSPGQPGGDPSA 100
A PP AG P + ET ++ +S G G PSA
Sbjct: 517 AEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSA 550
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,505,088
Number of Sequences: 37866
Number of extensions: 786901
Number of successful extensions: 6816
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 338
Number of HSP's that attempted gapping in prelim test: 6094
Number of HSP's gapped (non-prelim): 1066
length of query: 311
length of database: 18,247,518
effective HSP length: 102
effective length of query: 209
effective length of database: 14,385,186
effective search space: 3006503874
effective search space used: 3006503874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.