Guide to the Human Genome
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Name: LOC100294019 Sequence: fasta or formatted (97aa) NCBI GI: 239752827
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3          9           2
 C cysteine            2.1          2           1
 D aspartate           1.0          1           1
 E glutamate           1.0          1           1
 F phenylalanine       0.0          0           0
 G glycine             6.2          6           1
 H histidine           3.1          3           1
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             5.2          5           1
 M methionine          3.1          3           1
 N asparagine          0.0          0           0
 P proline            16.5         16           2
 Q glutamine           6.2          6           1
 R arginine           13.4         13           3
 S serine             17.5         17           1
 T threonine           8.2          8           1
 V valine              4.1          4           2
 W tryptophan          2.1          2           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290802          1.000   PREDICTED: hypothetical protein XP_002346570 
LOC100288818          1.000   PREDICTED: hypothetical protein XP_002342098 
LOC100133756          0.061   PREDICTED: hypothetical protein, partial 
LOC100291259          0.061   PREDICTED: hypothetical protein XP_002348181 
SFPQ                  0.061   splicing factor proline/glutamine rich (polypyrimidin...
PER3                  0.056   period 3 
UBE4B                 0.056   ubiquitination factor E4B isoform 1 
LOC645529             0.056   PREDICTED: similar to Putative acrosin-like proteas...
NOTO                  0.056   notochord homeobox 
SRRM1                 0.056   serine/arginine repetitive matrix 1 
SCARF2                0.045   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.045   scavenger receptor class F, member 2 isoform 2 [Homo...
OBSCN                 0.045   obscurin, cytoskeletal calmodulin and titin-interact...
LOC100132799          0.045   PREDICTED: hypothetical protein 
IGSF9B                0.045   immunoglobulin superfamily, member 9B 
LOC100292180          0.045   PREDICTED: hypothetical protein 
LOC100288278          0.045   PREDICTED: hypothetical protein 
LOC100288278          0.045   PREDICTED: hypothetical protein XP_002342826 
LOC100288278          0.045   PREDICTED: hypothetical protein 
RAD23A                0.045   UV excision repair protein RAD23 homolog A 
DSCAML1               0.039   Down syndrome cell adhesion molecule like 1 
PRB2                  0.039   proline-rich protein BstNI subfamily 2 
PRB1                  0.039   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB1                  0.039   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.039   proline-rich protein BstNI subfamily 1 isoform 2 pre...
RTN4                  0.039   reticulon 4 isoform B 
RTN4                  0.039   reticulon 4 isoform D 
RTN4                  0.039   reticulon 4 isoform A 
CREBBP                0.039   CREB binding protein isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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