Guide to the Human Genome
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Name: LOC100287726 Sequence: fasta or formatted (186aa) NCBI GI: 239748296
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {186aa} PREDICTED: hypothetical protein XP_002342449
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.9         24           3
 C cysteine            3.2          6           1
 D aspartate           2.2          4           1
 E glutamate           3.8          7           1
 F phenylalanine       2.7          5           2
 G glycine            10.8         20           2
 H histidine           0.5          1           1
 I isoleucine          1.1          2           1
 K lysine              3.2          6           1
 L leucine             5.4         10           1
 M methionine          2.2          4           1
 N asparagine          3.2          6           1
 P proline            11.3         21           2
 Q glutamine           3.8          7           2
 R arginine           14.5         27           2
 S serine              8.6         16           3
 T threonine           5.9         11           2
 V valine              4.3          8           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291718          1.000   PREDICTED: hypothetical protein XP_002345751 
LOC100287726          1.000   PREDICTED: hypothetical protein XP_002342449 
TNS1                  0.034   tensin 
LOC100290444          0.031   PREDICTED: hypothetical protein XP_002348216 
LOC100288789          0.031   PREDICTED: hypothetical protein XP_002343869 
LOC100288963          0.028   PREDICTED: hypothetical protein XP_002342546 
KIAA0284              0.028   hypothetical protein LOC283638 isoform 2 
KIAA0284              0.028   hypothetical protein LOC283638 isoform 1 
FAM148B               0.028   nuclear localized factor 2 
FLJ37078              0.028   hypothetical protein LOC222183 
PRB4                  0.028   proline-rich protein BstNI subfamily 4 precursor [Ho...
SRRM2                 0.025   splicing coactivator subunit SRm300 
LOC100292845          0.025   PREDICTED: hypothetical protein 
LOC100290946          0.025   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.025   PREDICTED: hypothetical protein XP_002344246 
LOC100289230          0.025   PREDICTED: hypothetical protein XP_002342600 
LOC100292723          0.022   PREDICTED: hypothetical protein 
NKX1-1                0.022   PREDICTED: NK1 homeobox 1 
LOC100290128          0.022   PREDICTED: hypothetical protein XP_002346712 
CABLES2               0.022   Cdk5 and Abl enzyme substrate 2 
COL3A1                0.020   collagen type III alpha 1 preproprotein 
LOC728046             0.020   PREDICTED: hypothetical protein 
SPEG                  0.020   SPEG complex locus 
MLXIPL                0.020   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.020   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.020   Williams Beuren syndrome chromosome region 14 isofor...
MLXIPL                0.020   Williams Beuren syndrome chromosome region 14 isofor...
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
LOC100289935          0.020   PREDICTED: hypothetical protein XP_002348168 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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