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Search of human proteins with 239752103
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752103 PREDICTED: hypothetical protein XP_002348112 [Homo
sapiens]
(308 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752103 PREDICTED: hypothetical protein XP_002348112 [Homo ... 627 e-180
gi|239757601 PREDICTED: hypothetical protein [Homo sapiens] 625 e-179
gi|239746607 PREDICTED: hypothetical protein XP_002343798 [Homo ... 615 e-176
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 36 0.038
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 36 0.049
gi|239751748 PREDICTED: hypothetical protein [Homo sapiens] 34 0.19
gi|239746248 PREDICTED: hypothetical protein XP_002343714 [Homo ... 34 0.19
gi|239757240 PREDICTED: hypothetical protein [Homo sapiens] 33 0.24
gi|63053512 keratin associated protein 10-1 [Homo sapiens] 33 0.42
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 32 0.54
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 32 0.93
gi|239513942 PREDICTED: hypothetical protein [Homo sapiens] 32 0.93
gi|115387118 hypothetical protein LOC57562 [Homo sapiens] 32 0.93
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 31 1.2
gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo ... 30 2.1
gi|239756672 PREDICTED: hypothetical protein LOC146429 [Homo sap... 30 3.5
gi|239755901 PREDICTED: chromosome 12 open reading frame 64 [Hom... 30 3.5
gi|239754979 PREDICTED: hypothetical protein [Homo sapiens] 30 3.5
gi|239750386 PREDICTED: chromosome 12 open reading frame 64 [Hom... 30 3.5
gi|239745643 PREDICTED: hypothetical protein LOC146429 isoform 1... 30 3.5
gi|239744688 PREDICTED: hypothetical protein LOC283310 [Homo sap... 30 3.5
gi|13540600 nudE nuclear distribution gene E homolog (A. nidulan... 30 3.5
gi|71284108 nudE nuclear distribution gene E homolog (A. nidulan... 30 3.5
gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a p... 30 3.5
gi|23110980 immunoglobulin lambda-like polypeptide 1 isoform b p... 30 3.5
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom... 30 3.5
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 29 6.0
gi|239754158 PREDICTED: hypothetical protein XP_002345896 [Homo ... 28 7.9
gi|239748676 PREDICTED: hypothetical protein XP_002346762 [Homo ... 28 7.9
gi|239742699 PREDICTED: hypothetical protein XP_002342611 [Homo ... 28 7.9
>gi|239752103 PREDICTED: hypothetical protein XP_002348112 [Homo
sapiens]
Length = 308
Score = 627 bits (1617), Expect = e-180
Identities = 308/308 (100%), Positives = 308/308 (100%)
Query: 1 MSTSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMAC 60
MSTSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMAC
Sbjct: 1 MSTSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMAC 60
Query: 61 TTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVS 120
TTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVS
Sbjct: 61 TTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVS 120
Query: 121 RRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSEGLEER 180
RRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSEGLEER
Sbjct: 121 RRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSEGLEER 180
Query: 181 REAGPGQDSGWGLLLLGRLPRAHTLTRAEDVLHVIDELLSDQVGEQRHVAHLLWLVAGDG 240
REAGPGQDSGWGLLLLGRLPRAHTLTRAEDVLHVIDELLSDQVGEQRHVAHLLWLVAGDG
Sbjct: 181 REAGPGQDSGWGLLLLGRLPRAHTLTRAEDVLHVIDELLSDQVGEQRHVAHLLWLVAGDG 240
Query: 241 VEVFTLVLLVEHVPDADGRHCDVAVAQRPQVEVIVPRVVAPVRDDHRKHTCLLAPALLDE 300
VEVFTLVLLVEHVPDADGRHCDVAVAQRPQVEVIVPRVVAPVRDDHRKHTCLLAPALLDE
Sbjct: 241 VEVFTLVLLVEHVPDADGRHCDVAVAQRPQVEVIVPRVVAPVRDDHRKHTCLLAPALLDE 300
Query: 301 AVVGKLEG 308
AVVGKLEG
Sbjct: 301 AVVGKLEG 308
>gi|239757601 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 625 bits (1611), Expect = e-179
Identities = 307/308 (99%), Positives = 308/308 (100%)
Query: 1 MSTSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMAC 60
MSTSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMAC
Sbjct: 1 MSTSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMAC 60
Query: 61 TTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVS 120
TTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVS
Sbjct: 61 TTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVS 120
Query: 121 RRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSEGLEER 180
RRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSEGLEER
Sbjct: 121 RRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSEGLEER 180
Query: 181 REAGPGQDSGWGLLLLGRLPRAHTLTRAEDVLHVIDELLSDQVGEQRHVAHLLWLVAGDG 240
REAGPGQDSGWGLLLLGRLPRAHTLTRAEDVLHVIDELLSDQVGEQRHVAHLLWLVAGDG
Sbjct: 181 REAGPGQDSGWGLLLLGRLPRAHTLTRAEDVLHVIDELLSDQVGEQRHVAHLLWLVAGDG 240
Query: 241 VEVFTLVLLVEHVPDADGRHCDVAVAQRPQVEVIVPRVVAPVRDDHRKHTCLLAPALLDE 300
VEVFTLVLLVEHVPDADGRHCDVAVAQRPQVEVIVPRVVAPVRDD+RKHTCLLAPALLDE
Sbjct: 241 VEVFTLVLLVEHVPDADGRHCDVAVAQRPQVEVIVPRVVAPVRDDYRKHTCLLAPALLDE 300
Query: 301 AVVGKLEG 308
AVVGKLEG
Sbjct: 301 AVVGKLEG 308
>gi|239746607 PREDICTED: hypothetical protein XP_002343798 [Homo
sapiens]
Length = 452
Score = 615 bits (1587), Expect = e-176
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MSTSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMAC 60
MSTSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMAC
Sbjct: 1 MSTSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMAC 60
Query: 61 TTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVS 120
TTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVS
Sbjct: 61 TTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVS 120
Query: 121 RRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSEGLEER 180
RRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSEGLEER
Sbjct: 121 RRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSEGLEER 180
Query: 181 REAGPGQDSGWGLLLLGRLPRAHTLTRAEDVLHVIDELLSDQVGEQRHVAHLLWLVAGDG 240
REAGPGQDSGWGLLLLGRLPRAHTLTRAEDVLHVIDELLSDQVGEQRHVAHLLWLVAGDG
Sbjct: 181 REAGPGQDSGWGLLLLGRLPRAHTLTRAEDVLHVIDELLSDQVGEQRHVAHLLWLVAGDG 240
Query: 241 VEVFTLVLLVEHVPDADGRHCDVAVAQRPQVEVIVPRVVAPVRDDHRKHTCLLAPALLDE 300
VEVFTLVLLVEHVPDADGRHCDVAVAQRPQVEVIVPRVVAPVRDDHRKHTCLLAPALLDE
Sbjct: 241 VEVFTLVLLVEHVPDADGRHCDVAVAQRPQVEVIVPRVVAPVRDDHRKHTCLLAPALLDE 300
Query: 301 AV 302
AV
Sbjct: 301 AV 302
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.2 bits (82), Expect = 0.038
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 96 SPGPPNCSSATRALRGSSSLRASVSRRA--TCSTKRRALWKFCSPSRSEPSSRKTMSTGR 153
SP P S ++R R +SS R + R + S K R L + S SR E KT +T R
Sbjct: 1732 SPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRRE----KTRTTRR 1787
Query: 154 CVHCATDSSVGRRREGLGTRSEGLEERREAGPGQDS 189
+ S RRR+ +RS + RR G G S
Sbjct: 1788 RDRSGSSQSTSRRRQRSRSRSR-VTRRRRGGSGYHS 1822
Score = 35.4 bits (80), Expect = 0.064
Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 14/161 (8%)
Query: 2 STSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAP-PRGLRTMALMAC 60
S+S +S+ ++ +DS SLPV P V A R P P A+
Sbjct: 2541 SSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEV-------ALKRVPSPTPAPKEAVREG 2593
Query: 61 TTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVS 120
P PT K R SS+S S ++ S + SS++ + SSS +S S
Sbjct: 2594 RPPEPTPAKRKRRSSSSSSSSS------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2647
Query: 121 RRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATDS 161
+ +AL K SP + P R++ S + + DS
Sbjct: 2648 SPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDS 2688
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 35.8 bits (81), Expect = 0.049
Identities = 43/172 (25%), Positives = 62/172 (36%), Gaps = 38/172 (22%)
Query: 44 CLRAPPRGLRTMALMACTTPAPTCEKEFRYCVVSSASWMAVR-----------LWLSGKA 92
CLR PP A +PAP SS W++ R WL +
Sbjct: 9 CLRPPP---------ARASPAPG----------SSVLWLSQRPSLAVSSRMVSFWLRMVS 49
Query: 93 TCCSPGPPNCSSATRALRGSSSLRASVSRRATCSTKRRALWKFCSPSRSEPSSRKTMSTG 152
CCS +CS+ R+ S+ A+ + + ST K P P+ R+ ++
Sbjct: 50 FCCSTVSRSCSTLLRS--SSAPPAATDAAHMSASTGTEVQMKRVGPKSWAPAPRRQRASS 107
Query: 153 RCVHCATDS--SVGRRREGLGTRSEGL----EERREAGPGQDSGWGLLLLGR 198
V A + + G R G G+ GL + R P G L GR
Sbjct: 108 AQVRAARPAGMAAGTGRSGPGSARLGLGSGWDPARAVAPRAARALGAALFGR 159
>gi|239751748 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 33.9 bits (76), Expect = 0.19
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 86 LWLSGKATCCSPGPPNCSSATRALRGSSS---LRA-SVSRRATCSTKRRALWKFCSPSRS 141
+W + + GP +CS + L GS L+A S+ R A+ S + WK +P
Sbjct: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
Query: 142 EPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSE 175
SR+ M + + C + +E + T E
Sbjct: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLE 94
>gi|239746248 PREDICTED: hypothetical protein XP_002343714 [Homo
sapiens]
Length = 217
Score = 33.9 bits (76), Expect = 0.19
Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Query: 86 LWLSGKATCCSPGPPNCSSATRALRGSSS---LRA-SVSRRATCSTKRRALWKFCSPSRS 141
+W + + GP +CS + L GS L+A S+ R A+ S + WK +P
Sbjct: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMASWSLAMSSGWKTWAPREG 60
Query: 142 EPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSE 175
SR+ M + + C + +E + T E
Sbjct: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLE 94
>gi|239757240 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 33.5 bits (75), Expect = 0.24
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 86 LWLSGKATCCSPGPPNCSSATRALRGSSS---LRA-SVSRRATCSTKRRALWKFCSPSRS 141
+W + + GP +CS + L GS L+A S+ R A S + WK +P
Sbjct: 1 MWAKARGATRAGGPSSCSGSRSPLSGSRRRTWLKAKSLPRMANWSLAMSSGWKTWAPREG 60
Query: 142 EPSSRKTMSTGRCVHCATDSSVGRRREGLGTRSE 175
SR+ M + + C + +E + T E
Sbjct: 61 SCCSRRNMEPSQRMTCGVPNVACEAQEHVPTSLE 94
>gi|63053512 keratin associated protein 10-1 [Homo sapiens]
Length = 282
Score = 32.7 bits (73), Expect = 0.42
Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 13/157 (8%)
Query: 16 CLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMACTTPA---PTCEKEFR 72
C C C S + +++ + C +P + + + C P PTC K+
Sbjct: 62 CEPSPCQSGCTSSCTPSCCQQSSCQPACCTSSPCQ--QACCVPVCCKPVCCLPTCSKDSS 119
Query: 73 YCVVSSASWMAVRLWLSGKATCCSP--GPPNCSSATRALRGSSSLRASVSRRATCSTKRR 130
C S+ S + +CC P P C T + SS + S S C T
Sbjct: 120 SCCQQSSCQPTCCASSSSQQSCCVPVCCKPVCYVPTCSEDSSSCCQQS-SCHPACCTSSP 178
Query: 131 ALWKFCSPSRSEPSSRK-----TMSTGRCVHCATDSS 162
C P R +P K + +G C SS
Sbjct: 179 CQQACCVPVRCKPVCCKPICCVPVCSGASTSCCQQSS 215
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 32.3 bits (72), Expect = 0.54
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 16/170 (9%)
Query: 2 STSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMACT 61
ST ++S +T C C S S + S ++++ SS C R T +
Sbjct: 107 STCCCQSSRTSSTSC---SCQSSRTSS--TSCSCQSSRTSSTCSCQTSRTSSTSCSYQSS 161
Query: 62 TPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSS--SLRASV 119
+ TC + +S +W + R S +C S G + S + ++ SS S ++S
Sbjct: 162 RTSSTCSCQSSGTSSTSCNWQSSR--TSSTCSCQSSGTSSTSYSCQSSGTSSTCSCQSSG 219
Query: 120 SRRATCSTKRRALWKFCSPSRSEPS-------SRKTMSTGRCVHCATDSS 162
+ +CS + CS S S S +T ST C T S+
Sbjct: 220 TSSTSCSCQSSGTSSTCSCQSSGTSSTSCSWQSSRTSSTCSCQSSGTSST 269
Score = 29.3 bits (64), Expect = 4.6
Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 17/176 (9%)
Query: 2 STSLPKASTVGTTFC----LRMECADSCRLS--LPVTPSVRNTKDSSACLRAPPRGLRTM 55
ST ++S +T C R SC+ S + S +++ SS C T
Sbjct: 165 STCSCQSSGTSSTSCNWQSSRTSSTCSCQSSGTSSTSYSCQSSGTSSTCSCQSSGTSSTS 224
Query: 56 ALMACTTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPG--PPNCSSATRALRGSS 113
+ + TC + +S SW + R S +C S G +CS + +
Sbjct: 225 CSCQSSGTSSTCSCQSSGTSSTSCSWQSSR--TSSTCSCQSSGTSSTSCSCQSSGTSSTC 282
Query: 114 SLRASVSRRATCSTKRRALWKFCSPSRSEPS-------SRKTMSTGRCVHCATDSS 162
S ++S + +CS + CS S S S +T ST C T S+
Sbjct: 283 SCQSSGTSSTSCSCQSSRTSSTCSCQFSRTSSTSCSCQSSRTSSTCSCQSSGTSST 338
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 31.6 bits (70), Expect = 0.93
Identities = 41/170 (24%), Positives = 67/170 (39%), Gaps = 16/170 (9%)
Query: 2 STSLPKASTVGTTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMACT 61
ST ++S +T C C S S + S ++++ SS C R T +
Sbjct: 107 STCRCQSSRTSSTSC---SCQSSRTSS--TSCSCQSSRTSSTCSCQTSRTSSTSCSYQSS 161
Query: 62 TPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSS--SLRASV 119
+ TC + +S +W + R S +C S G + S + ++ SS S ++S
Sbjct: 162 RTSSTCSCQSSGTSSTSCNWQSSR--TSSTCSCQSSGTSSTSYSCQSSGTSSTCSCQSSG 219
Query: 120 SRRATCSTKRRALWKFCSPSRSEPS-------SRKTMSTGRCVHCATDSS 162
+ +CS + CS S S S +T ST C T S+
Sbjct: 220 TSSTSCSCQSSGTSSTCSCQSSGTSSTSCSWQSSRTSSTCSCQSSRTSST 269
>gi|239513942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 300
Score = 31.6 bits (70), Expect = 0.93
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 85 RLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVSRRATCSTKRRALWKFCSPSRS--- 141
RL L C S GP +R+ R S +L A +SR ++ + R+L CS S
Sbjct: 20 RLPLPAPLGCSSLGPALVGLGSRSPRASCALLARLSRSSSSLARARSLKSRCSSSCCRQL 79
Query: 142 --EPSS---RKTMSTGRC 154
EPS+ R+ S RC
Sbjct: 80 WLEPSARGGRQDPSASRC 97
>gi|115387118 hypothetical protein LOC57562 [Homo sapiens]
Length = 1117
Score = 31.6 bits (70), Expect = 0.93
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 53 RTMALMACTTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGS 112
R A + CT +P CE+ + + +A +V LW G PN + GS
Sbjct: 900 RQDATLYCTQRSPVCEESYPSVTLRTAEEESVPLWKRG---------PNVLHQNKRATGS 950
Query: 113 SSLRASVSRRATCSTKRR 130
+ +R R+ TKRR
Sbjct: 951 TVMR----RKRIAETKRR 964
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 31.2 bits (69), Expect = 1.2
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 11/79 (13%)
Query: 90 GKATCCSPGP-PNCSSATRALRGSSSLRASVSRRATCSTKRRALWKFCSPSRSEPSSRKT 148
GK++ SPGP P S++R S S+ + S ++R SPS +P SR
Sbjct: 485 GKSSSRSPGPHPRSWSSSR----------SPSKSRSRSAEKRPHSPSRSPSPKKPLSRDK 534
Query: 149 MSTGRCVHCATDSSVGRRR 167
GR H +++ RRR
Sbjct: 535 DGEGRARHSEAEATRARRR 553
>gi|239745977 PREDICTED: hypothetical protein XP_002343631 [Homo
sapiens]
Length = 177
Score = 30.4 bits (67), Expect = 2.1
Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 25 CRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMACTTPAPTCEKEFRYCVVS-SASWMA 83
C LS TP + S+C RA GL + PA + R +VS + S +
Sbjct: 53 CALSTGTTPGGAPSGAHSSCRRAVRPGLSVAGKASAPRPASHLYSKLRPRLVSVTVSTSS 112
Query: 84 VRLWLSGKATCCSPGPPNCSSATRALRGSSS 114
W P P NCSS+ + +SS
Sbjct: 113 PSAW--------KPSPANCSSSGKDEAAASS 135
>gi|239756672 PREDICTED: hypothetical protein LOC146429 [Homo
sapiens]
Length = 495
Score = 29.6 bits (65), Expect = 3.5
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 74 CVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVSRRATCSTKRRALW 133
C+V + L + A C P P A RALRG + L A++ R AL
Sbjct: 29 CIVLGLVLSSEELLTAQPAPHCRPDPTLLPPALRALRGPALLDAAIPRLGPTRAPAEAL- 87
Query: 134 KFCSPSRSEPSSR 146
SPS P +R
Sbjct: 88 GVLSPSYLAPLTR 100
>gi|239755901 PREDICTED: chromosome 12 open reading frame 64 [Homo
sapiens]
Length = 2250
Score = 29.6 bits (65), Expect = 3.5
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 63 PAPTCEKEFRYCVVSSASWMAVRLWLSG-KATCCSPGPPNCSSATRALRGSSSLRASVSR 121
P P CE+E + W + G T C P C+++ + + G S L
Sbjct: 1806 PTPVCEREAEVVMGIIDKWTCCSKEVCGCDTTLCETSIPTCTNSQKLIVGHSPLSCCPQY 1865
Query: 122 RATCSTKRRALWKFCSPSRSEPSSRK 147
+ C + PS S P R+
Sbjct: 1866 KCECDPLK-------CPSISTPECRE 1884
>gi|239754979 PREDICTED: hypothetical protein [Homo sapiens]
Length = 780
Score = 29.6 bits (65), Expect = 3.5
Identities = 30/111 (27%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 17 LRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMALMACTTP-APTCEKEFRYCV 75
LR + SC P R+ S C + R R ++ + + P AP R+
Sbjct: 313 LRPSVSSSCAAVSDAAPGCRSASWCSCCAKESRRSSRQLSRLRRSPPTAPGAATSSRHAW 372
Query: 76 VSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVSRRATCS 126
++A LWL AT +P PP S A SSS + T S
Sbjct: 373 DTTA-----LLWL---ATVMAPAPPPGSRAGPLYFSSSSATLVEAAERTAS 415
>gi|239750386 PREDICTED: chromosome 12 open reading frame 64 [Homo
sapiens]
Length = 2250
Score = 29.6 bits (65), Expect = 3.5
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 63 PAPTCEKEFRYCVVSSASWMAVRLWLSG-KATCCSPGPPNCSSATRALRGSSSLRASVSR 121
P P CE+E + W + G T C P C+++ + + G S L
Sbjct: 1806 PTPVCEREAEVVMGIIDKWTCCSKEVCGCDTTLCETSIPTCTNSQKLIVGHSPLSCCPQY 1865
Query: 122 RATCSTKRRALWKFCSPSRSEPSSRK 147
+ C + PS S P R+
Sbjct: 1866 KCECDPLK-------CPSISTPECRE 1884
>gi|239745643 PREDICTED: hypothetical protein LOC146429 isoform 1
[Homo sapiens]
Length = 558
Score = 29.6 bits (65), Expect = 3.5
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 74 CVVSSASWMAVRLWLSGKATCCSPGPPNCSSATRALRGSSSLRASVSRRATCSTKRRALW 133
C+V + L + A C P P A RALRG + L A++ R AL
Sbjct: 29 CIVLGLVLSSEELLTAQPAPHCRPDPTLLPPALRALRGPALLDAAIPRLGPTRAPAEAL- 87
Query: 134 KFCSPSRSEPSSR 146
SPS P +R
Sbjct: 88 GVLSPSYLAPLTR 100
>gi|239744688 PREDICTED: hypothetical protein LOC283310 [Homo sapiens]
Length = 2250
Score = 29.6 bits (65), Expect = 3.5
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 63 PAPTCEKEFRYCVVSSASWMAVRLWLSG-KATCCSPGPPNCSSATRALRGSSSLRASVSR 121
P P CE+E + W + G T C P C+++ + + G S L
Sbjct: 1806 PTPVCEREAEVVMGIIDKWTCCSKEVCGCDTTLCETSIPTCTNSQKLIVGHSPLSCCPQY 1865
Query: 122 RATCSTKRRALWKFCSPSRSEPSSRK 147
+ C + PS S P R+
Sbjct: 1866 KCECDPLK-------CPSISTPECRE 1884
>gi|13540600 nudE nuclear distribution gene E homolog (A.
nidulans)-like 1 isoform B [Homo sapiens]
Length = 345
Score = 29.6 bits (65), Expect = 3.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 13 TTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMAL 57
T C +M+ A LSLP TP + T+++ +A P G T L
Sbjct: 200 TLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFGTSPL 244
>gi|71284108 nudE nuclear distribution gene E homolog (A.
nidulans)-like 1 isoform A [Homo sapiens]
Length = 328
Score = 29.6 bits (65), Expect = 3.5
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 13 TTFCLRMECADSCRLSLPVTPSVRNTKDSSACLRAPPRGLRTMAL 57
T C +M+ A LSLP TP + T+++ +A P G T L
Sbjct: 200 TLDCEKMDSAVQASLSLPATPVGKGTENTFPSPKAIPNGFGTSPL 244
>gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a
precursor [Homo sapiens]
Length = 213
Score = 29.6 bits (65), Expect = 3.5
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 171 GTRSEGLEERREAGPGQDSGWGLLLLGRLPRAHTLTR 207
GT GLE E GP W LLLLG H L R
Sbjct: 4 GTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLR 40
>gi|23110980 immunoglobulin lambda-like polypeptide 1 isoform b
precursor [Homo sapiens]
Length = 84
Score = 29.6 bits (65), Expect = 3.5
Identities = 17/37 (45%), Positives = 17/37 (45%)
Query: 171 GTRSEGLEERREAGPGQDSGWGLLLLGRLPRAHTLTR 207
GT GLE E GP W LLLLG H L R
Sbjct: 4 GTGQGGLEAPGEPGPNLRQRWPLLLLGLAVVTHGLLR 40
>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
sapiens]
Length = 2063
Score = 29.6 bits (65), Expect = 3.5
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 99 PPNCSSATRALRGSSSLR-ASVSRRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHC 157
P N S T +GS + SV R C + R L + E + RCV C
Sbjct: 1806 PQNFKSVTLGTQGSPITKMVSVGGRLWCGCQNRVLVLSPDTLQLEHMFYVGQDSSRCVAC 1865
Query: 158 ATDSSVG 164
DSS+G
Sbjct: 1866 MVDSSLG 1872
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 28.9 bits (63), Expect = 6.0
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 17/118 (14%)
Query: 101 NCSSATRALRGSSSLRASVSRRATCSTKRRALWKFCSPSRSEPSSRKTMSTGRCVHCATD 160
+CSS+ R+ R SSS +S S ++ S+ S SRS S + S R + +
Sbjct: 1469 SCSSSGRSRRCSSSSSSSSSSSSSSSSSS------SSRSRSRSPSPRRRSDRRRRYSSYR 1522
Query: 161 SSVGRRREGLGTRSEGLEERREAGPGQDSGWGLLLLGRLPRAHTLTRAEDVLHVIDEL 218
S +R+ + + +EERR ++ +G++P T + + V E+
Sbjct: 1523 SHDHYQRQRVLQKERAIEERR-----------VVFIGKIPGRMTRSELKQRFSVFGEI 1569
>gi|239754158 PREDICTED: hypothetical protein XP_002345896 [Homo
sapiens]
Length = 169
Score = 28.5 bits (62), Expect = 7.9
Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 41 SSACLRAPPRGLRTMALMACTTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPP 100
S LR+ G A A TP R S+ WMA LW G+ SP P
Sbjct: 13 SELWLRSRLWGCTPAAASAAHTPVGVSIPVLR----SARFWMAGNLW--GQRAAISPRSP 66
Query: 101 N--CSSATRALRGSSSLRASVSRRATC-----STKRRALWKFCSPSRSE 142
+ S +R +R + S + C ST R L CS + E
Sbjct: 67 SPGLSDRSRLVRAGKARTCSQEKAGECAWAMLSTLRPGLSHCCSSASQE 115
>gi|239748676 PREDICTED: hypothetical protein XP_002346762 [Homo
sapiens]
Length = 169
Score = 28.5 bits (62), Expect = 7.9
Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 41 SSACLRAPPRGLRTMALMACTTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPP 100
S LR+ G A A TP R S+ WMA LW G+ SP P
Sbjct: 13 SELWLRSRLWGCTPAAASAAHTPVGVSIPVLR----SARFWMAGNLW--GQRAAISPRSP 66
Query: 101 N--CSSATRALRGSSSLRASVSRRATC-----STKRRALWKFCSPSRSE 142
+ S +R +R + S + C ST R L CS + E
Sbjct: 67 SPGLSDRSRLVRAGKARTCSQEKAGECAWAMLSTLRPGLSHCCSSASQE 115
>gi|239742699 PREDICTED: hypothetical protein XP_002342611 [Homo
sapiens]
Length = 169
Score = 28.5 bits (62), Expect = 7.9
Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 41 SSACLRAPPRGLRTMALMACTTPAPTCEKEFRYCVVSSASWMAVRLWLSGKATCCSPGPP 100
S LR+ G A A TP R S+ WMA LW G+ SP P
Sbjct: 13 SELWLRSRLWGCTPAAASAAHTPVGVSIPVLR----SARFWMAGNLW--GQRAAISPRSP 66
Query: 101 N--CSSATRALRGSSSLRASVSRRATC-----STKRRALWKFCSPSRSE 142
+ S +R +R + S + C ST R L CS + E
Sbjct: 67 SPGLSDRSRLVRAGKARTCSQEKAGECAWAMLSTLRPGLSHCCSSASQE 115
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,270,708
Number of Sequences: 37866
Number of extensions: 620131
Number of successful extensions: 1819
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1785
Number of HSP's gapped (non-prelim): 48
length of query: 308
length of database: 18,247,518
effective HSP length: 102
effective length of query: 206
effective length of database: 14,385,186
effective search space: 2963348316
effective search space used: 2963348316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.