Guide to the Human Genome
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Name: LOC100291895 Sequence: fasta or formatted (169aa) NCBI GI: 239754158
Description:

PREDICTED: hypothetical protein XP_002345896

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         22           3
 C cysteine            3.0          5           2
 D aspartate           1.2          2           1
 E glutamate           3.6          6           1
 F phenylalanine       1.8          3           1
 G glycine             7.7         13           2
 H histidine           2.4          4           1
 I isoleucine          1.8          3           1
 K lysine              1.8          3           1
 L leucine             8.9         15           1
 M methionine          2.4          4           1
 N asparagine          0.6          1           1
 P proline             6.5         11           1
 Q glutamine           1.8          3           1
 R arginine           13.0         22           3
 S serine             16.6         28           3
 T threonine           4.7          8           1
 V valine              5.9         10           1
 W tryptophan          3.0          5           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345896 
LOC100289906          1.000   PREDICTED: hypothetical protein XP_002346762 
LOC100288344          1.000   PREDICTED: hypothetical protein XP_002342611 
NKAP                  0.029   NFKB activating protein 
GLI1                  0.022   GLI family zinc finger 1 isoform 2 
GLI1                  0.022   GLI family zinc finger 1 isoform 1 
TMPRSS13              0.022   transmembrane protease, serine 13 
ASTL                  0.016   astacin-like metalloendopeptidase 
LOC100291743          0.016   PREDICTED: hypothetical protein XP_002344931 
LOC100288859          0.016   PREDICTED: hypothetical protein XP_002343508 
GLI2                  0.013   GLI-Kruppel family member GLI2 
LOC100292133          0.013   PREDICTED: hypothetical protein 
ZNF716                0.013   PREDICTED: zinc finger protein 716 
LOC100294354          0.013   PREDICTED: hypothetical protein 
KIAA1853              0.013   KIAA1853 protein 
BCL2L12               0.013   BCL2-like 12 isoform 1 
SRRM2                 0.013   splicing coactivator subunit SRm300 
GGN                   0.013   gametogenetin 
LOC100293875          0.010   PREDICTED: hypothetical protein 
LOC100289803          0.010   PREDICTED: hypothetical protein XP_002348112 
LOC100288508          0.010   PREDICTED: hypothetical protein XP_002343798 
ACD                   0.010   adrenocortical dysplasia homolog isoform 1 
ACD                   0.010   adrenocortical dysplasia homolog isoform 3 
ACD                   0.010   adrenocortical dysplasia homolog isoform 2 
C13orf23              0.010   hypothetical protein LOC80209 isoform 2 
C13orf23              0.010   hypothetical protein LOC80209 isoform 1 
EFCAB4A               0.010   EF-hand calcium binding domain 4A 
HCLS1                 0.010   hematopoietic cell-specific Lyn substrate 1 
IKBKB                 0.010   inhibitor of nuclear factor kappa B kinase beta subu...
WNK1                  0.010   WNK lysine deficient protein kinase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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