Guide to the Human Genome
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Name: LOC100294128 Sequence: fasta or formatted (300aa) NCBI GI: 239513942
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         27           2
 C cysteine            3.7         11           3
 D aspartate           2.0          6           1
 E glutamate           5.0         15           2
 F phenylalanine       2.3          7           2
 G glycine            11.7         35           2
 H histidine           1.3          4           1
 I isoleucine          2.3          7           2
 K lysine              2.7          8           2
 L leucine            11.3         34           2
 M methionine          1.3          4           1
 N asparagine          0.3          1           1
 P proline             8.3         25           3
 Q glutamine           5.0         15           2
 R arginine            9.7         29           2
 S serine             13.0         39           4
 T threonine           3.3         10           2
 V valine              4.3         13           1
 W tryptophan          3.0          9           2
 Y tyrosine            0.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293501          0.015   PREDICTED: hypothetical protein 
LOC100291178          0.015   PREDICTED: hypothetical protein XP_002347544 
LOC100289466          0.015   PREDICTED: hypothetical protein XP_002342181 
LOC100293975          0.015   PREDICTED: hypothetical protein 
KRTAP5-8              0.014   keratin associated protein 5-8 
BRUNOL6               0.014   bruno-like 6, RNA binding protein 
LOC100293875          0.012   PREDICTED: hypothetical protein 
LOC100289803          0.012   PREDICTED: hypothetical protein XP_002348112 
LOC100131251          0.012   PREDICTED: hypothetical protein 
LOC100288508          0.012   PREDICTED: hypothetical protein XP_002343798 
LOC100131251          0.012   PREDICTED: hypothetical protein 
TMPRSS13              0.012   transmembrane protease, serine 13 
LOC100293526          0.010   PREDICTED: hypothetical protein 
ZRANB2                0.010   zinc finger protein 265 isoform 1 
ZRANB2                0.010   zinc finger protein 265 isoform 2 
FAM164C               0.010   chromosome 14 open reading frame 140 isoform b [Hom...
FAM164C               0.010   chromosome 14 open reading frame 140 isoform a [Hom...
DBP                   0.008   D site of albumin promoter (albumin D-box) binding p...
PRB2                  0.008   proline-rich protein BstNI subfamily 2 
PRB1                  0.008   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRB1                  0.008   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRB1                  0.008   proline-rich protein BstNI subfamily 1 isoform 2 pre...
CHD9                  0.008   chromodomain helicase DNA binding protein 9 
LOC100293412          0.008   PREDICTED: hypothetical protein 
LOC100287499          0.008   PREDICTED: hypothetical protein 
LOC100290067          0.008   PREDICTED: hypothetical protein XP_002347479 
LOC100287499          0.008   PREDICTED: hypothetical protein XP_002343643 
LOC100289251          0.008   PREDICTED: hypothetical protein XP_002343312 
TBC1D10B              0.008   TBC1 domain family, member 10B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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