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Search of human proteins with 239752059
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752059 PREDICTED: hypothetical protein XP_002348078 [Homo
sapiens]
(145 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757545 PREDICTED: hypothetical protein [Homo sapiens] 287 2e-78
gi|239752059 PREDICTED: hypothetical protein XP_002348078 [Homo ... 287 2e-78
gi|239746544 PREDICTED: hypothetical protein XP_002343774 [Homo ... 287 2e-78
gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase pre... 32 0.25
gi|239753357 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|239747925 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|239741819 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 30 0.55
gi|239757595 PREDICTED: hypothetical protein [Homo sapiens] 29 1.2
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|169162889 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|113403785 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|26051273 voltage-gated potassium channel, subfamily H, member... 28 2.7
gi|4557729 voltage-gated potassium channel, subfamily H, member ... 28 2.7
gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 28 3.5
gi|113411437 PREDICTED: similar to UPF0627 protein ENSP000003581... 28 3.5
gi|58331148 matrix metalloproteinase 11 preproprotein [Homo sapi... 28 3.5
gi|83921602 solute carrier family 38, member 10 isoform a [Homo ... 28 3.5
gi|4759026 RAS protein activator like 1 [Homo sapiens] 28 3.5
gi|4557485 ceruloplasmin precursor [Homo sapiens] 27 4.6
gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo ... 27 4.6
gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo ... 27 4.6
gi|41406097 dishevelled 3 [Homo sapiens] 27 4.6
gi|26051231 lactamase, beta isoform a [Homo sapiens] 27 4.6
gi|26051233 lactamase, beta isoform b [Homo sapiens] 27 4.6
gi|47271475 SPOC domain containing 1 [Homo sapiens] 27 4.6
gi|169210481 PREDICTED: hypothetical protein [Homo sapiens] 27 6.0
gi|239750425 PREDICTED: hypothetical protein XP_002347391 [Homo ... 27 6.0
gi|169210045 PREDICTED: hypothetical protein [Homo sapiens] 27 6.0
gi|239742020 PREDICTED: hypothetical protein XP_002342373 [Homo ... 27 6.0
>gi|239757545 PREDICTED: hypothetical protein [Homo sapiens]
Length = 145
Score = 287 bits (735), Expect = 2e-78
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MLVTSGDASSSPRTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGS 60
MLVTSGDASSSPRTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGS
Sbjct: 1 MLVTSGDASSSPRTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGS 60
Query: 61 LLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEV 120
LLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEV
Sbjct: 61 LLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEV 120
Query: 121 DVGTVLLEEGGLQAEGALQLPLRRP 145
DVGTVLLEEGGLQAEGALQLPLRRP
Sbjct: 121 DVGTVLLEEGGLQAEGALQLPLRRP 145
>gi|239752059 PREDICTED: hypothetical protein XP_002348078 [Homo
sapiens]
Length = 145
Score = 287 bits (735), Expect = 2e-78
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MLVTSGDASSSPRTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGS 60
MLVTSGDASSSPRTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGS
Sbjct: 1 MLVTSGDASSSPRTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGS 60
Query: 61 LLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEV 120
LLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEV
Sbjct: 61 LLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEV 120
Query: 121 DVGTVLLEEGGLQAEGALQLPLRRP 145
DVGTVLLEEGGLQAEGALQLPLRRP
Sbjct: 121 DVGTVLLEEGGLQAEGALQLPLRRP 145
>gi|239746544 PREDICTED: hypothetical protein XP_002343774 [Homo
sapiens]
Length = 145
Score = 287 bits (735), Expect = 2e-78
Identities = 145/145 (100%), Positives = 145/145 (100%)
Query: 1 MLVTSGDASSSPRTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGS 60
MLVTSGDASSSPRTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGS
Sbjct: 1 MLVTSGDASSSPRTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGS 60
Query: 61 LLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEV 120
LLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEV
Sbjct: 61 LLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEV 120
Query: 121 DVGTVLLEEGGLQAEGALQLPLRRP 145
DVGTVLLEEGGLQAEGALQLPLRRP
Sbjct: 121 DVGTVLLEEGGLQAEGALQLPLRRP 145
>gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase
precursor [Homo sapiens]
Length = 339
Score = 31.6 bits (70), Expect = 0.25
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 55 VHPSGS-LLPVCPALLVPVLRLPVGHPGIRAGVNIQARA---EAAGPRAWAGRGSRQPLE 110
+H G+ L+ C A L P LRLP G RAG I A+ A GP G S E
Sbjct: 15 LHAGGARLVAACSAWLCPGLRLPGSLAGRRAGPAIWAQGWVPAAGGPAPKRGYSSEMKTE 74
Query: 111 PDAEVAAAE 119
+ V E
Sbjct: 75 DELRVRHLE 83
>gi|239753357 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 30.4 bits (67), Expect = 0.55
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 81 GIRAGVNIQARAEA----AGPRAWAGRG--SRQPLEPDAE 114
G RAG ++A A A A PRA AG+G ++QP +P AE
Sbjct: 204 GRRAGARVRAEAAAEAGGAQPRARAGQGGSAKQPRQPHAE 243
>gi|239747925 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 30.4 bits (67), Expect = 0.55
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 81 GIRAGVNIQARAEA----AGPRAWAGRG--SRQPLEPDAE 114
G RAG ++A A A A PRA AG+G ++QP +P AE
Sbjct: 204 GRRAGARVRAEAAAEAGGAQPRARAGQGGSAKQPRQPHAE 243
>gi|239741819 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 30.4 bits (67), Expect = 0.55
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 6/40 (15%)
Query: 81 GIRAGVNIQARAEA----AGPRAWAGRG--SRQPLEPDAE 114
G RAG ++A A A A PRA AG+G ++QP +P AE
Sbjct: 204 GRRAGARVRAEAAAEAGGAQPRARAGQGGSAKQPRQPHAE 243
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 30.4 bits (67), Expect = 0.55
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Query: 57 PSGSLLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVA 116
P+ LP P+LLVPV P P + + + AGP+ + GS++PL P A
Sbjct: 48 PAKPALPAKPSLLVPVGPRPPRGP-LAELPSARKMNMLAGPQPYG--GSKRPL-PFAPRP 103
Query: 117 AAEVDVGTVLLEEGGLQAEGALQLPLRRP 145
A E G +E G + G + P P
Sbjct: 104 AVEASTGGEATQETGKEEAGKEEPPPLTP 132
>gi|239757595 PREDICTED: hypothetical protein [Homo sapiens]
Length = 612
Score = 29.3 bits (64), Expect = 1.2
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 47 HAHVVDEEVHPSGSLLPVCPALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAW 100
H VD+E L P LL P+L P H AG I GP+AW
Sbjct: 98 HGDEVDQETRREADTLWKPPCLLFPILPGPSPHQP-EAGPPILPAEPRCGPQAW 150
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 28.9 bits (63), Expect = 1.6
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 2/103 (1%)
Query: 13 RTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGSLLPVCPALLVPV 72
R S R G + G QGAR L + E P+ + P PA P
Sbjct: 321 RVGSRARAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPHPRRPAGSPPA 380
Query: 73 LRLPVGHPGIRAGVNIQAR--AEAAGPRAWAGRGSRQPLEPDA 113
L G + +IQ + A+ + R WAG+ + EP+A
Sbjct: 381 LADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQREPEA 423
>gi|169162889 PREDICTED: hypothetical protein [Homo sapiens]
Length = 169
Score = 28.5 bits (62), Expect = 2.1
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 58 SGSLLPVCPALLVPVLRLPVGHPGIRAG--VNIQARAEAAGPRA-------WAGR--GSR 106
S + PV LLV + P G + G ++ ARA+ AGPRA W R R
Sbjct: 21 STTACPVAFILLVWNSQTPAGLQSLCTGRHPSLSARAQRAGPRASREEGTFWTERVGQER 80
Query: 107 QPLEPDAEVAAAEVDVGTVLLEEGGLQAE 135
+ + ++ D G L+ + GL+A+
Sbjct: 81 WLIRSGSSQNESQEDQGAGLISQAGLKAD 109
>gi|113403785 PREDICTED: hypothetical protein [Homo sapiens]
Length = 169
Score = 28.5 bits (62), Expect = 2.1
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 58 SGSLLPVCPALLVPVLRLPVGHPGIRAG--VNIQARAEAAGPRA-------WAGR--GSR 106
S + PV LLV + P G + G ++ ARA+ AGPRA W R R
Sbjct: 21 STTACPVAFILLVWNSQTPAGLQSLCTGRHPSLSARAQRAGPRASREEGTFWTERVGQER 80
Query: 107 QPLEPDAEVAAAEVDVGTVLLEEGGLQAE 135
+ + ++ D G L+ + GL+A+
Sbjct: 81 WLIRSGSSQNESQEDQGAGLISQAGLKAD 109
>gi|26051273 voltage-gated potassium channel, subfamily H, member 2
isoform c [Homo sapiens]
Length = 819
Score = 28.1 bits (61), Expect = 2.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 62 LPVCPALLVPVLRLPVGHPGIRAGVNIQARAEA 94
LP CPA +L +P+ PG R ++++R +A
Sbjct: 672 LPRCPAPTPSLLNIPLSSPGRRPRGDVESRLDA 704
>gi|4557729 voltage-gated potassium channel, subfamily H, member 2
isoform a [Homo sapiens]
Length = 1159
Score = 28.1 bits (61), Expect = 2.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 62 LPVCPALLVPVLRLPVGHPGIRAGVNIQARAEA 94
LP CPA +L +P+ PG R ++++R +A
Sbjct: 1012 LPRCPAPTPSLLNIPLSSPGRRPRGDVESRLDA 1044
>gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 753
Score = 27.7 bits (60), Expect = 3.5
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 50 VVDEEVHPSGSLLPVCPALLVPV-LRLP-VGHPGIRAGVNIQARA-EAAGPRAWAGRGSR 106
VV PSG+ P A P R+P V + AG ARA + GP AGR S
Sbjct: 25 VVKSGCGPSGATRPKTGAQPHPRGCRVPSVRSCALGAGQEQLARAAQPVGPLGAAGRSSG 84
Query: 107 QPLEPDAEVAAA 118
+P +P AAA
Sbjct: 85 KPRQPTGAAAAA 96
>gi|113411437 PREDICTED: similar to UPF0627 protein ENSP00000358171
isoform 1 [Homo sapiens]
Length = 169
Score = 27.7 bits (60), Expect = 3.5
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 58 SGSLLPVCPALLVPVLRLPVGHPGIRAG--VNIQARAEAAGPRAWAGRGS---------R 106
S + PV LLV + P G + G ++ ARA+ AGPRA G+ R
Sbjct: 21 STTACPVACILLVWNSQTPAGLQSLCTGRHPSLSARAQWAGPRASREEGTFWTEPVGQER 80
Query: 107 QPLEPDAEVAAAEVDVGTVLLEEGGLQAE 135
+ + + ++ D G L+ GL+A+
Sbjct: 81 RLIRSGSSQNESQEDQGADLISHEGLKAD 109
>gi|58331148 matrix metalloproteinase 11 preproprotein [Homo
sapiens]
Length = 488
Score = 27.7 bits (60), Expect = 3.5
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 88 IQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEVDVGTVLLEEGGL 132
+ +R A GP+A PLEPDA A E V G L
Sbjct: 264 VTSRTPALGPQAGIDTNEIAPLEPDAPPDACEASFDAVSTIRGEL 308
>gi|83921602 solute carrier family 38, member 10 isoform a [Homo
sapiens]
Length = 1119
Score = 27.7 bits (60), Expect = 3.5
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 66 PALLVPVLRLPVGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLE--PDAEVAAAE 119
P L PVLR P G P +N ++ + GP GR P + PD E AA+
Sbjct: 778 PLPLDPVLRAPGGRPAPSQDLNQRSLEHSEGP---VGRDPAGPPDGGPDTEPRAAQ 830
>gi|4759026 RAS protein activator like 1 [Homo sapiens]
Length = 804
Score = 27.7 bits (60), Expect = 3.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 77 VGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEVDVGTVLLEEG 130
VGH I +++ A A PR + ++PDAEV E+ + +LE+G
Sbjct: 78 VGHDDIIGKISLSREAITADPRGIDSWINLSRVDPDAEV-QGEICLSVQMLEDG 130
>gi|4557485 ceruloplasmin precursor [Homo sapiens]
Length = 1065
Score = 27.3 bits (59), Expect = 4.6
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 13 RTASSLRLGIRKLLGQQLNGEQGARPQHLFRNL------LHAHVVDEEVHPSGSLLPVCP 66
R A LGI LG QL+ + G + + +F+N+ +HAH V E S ++ P P
Sbjct: 798 RKAEEEHLGI---LGPQLHADVGDKVKIIFKNMATRPYSIHAHGVQTE---SSTVTPTLP 851
Query: 67 A-LLVPVLRLP 76
L V ++P
Sbjct: 852 GETLTYVWKIP 862
>gi|239751080 PREDICTED: hypothetical protein XP_002347700 [Homo
sapiens]
Length = 330
Score = 27.3 bits (59), Expect = 4.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 80 PGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAA 117
P +R V +QA EA+G AW R R P A AA
Sbjct: 225 PRLRIPVWLQALQEASGLGAWGARCGRDPGSAPAAGAA 262
>gi|239745567 PREDICTED: hypothetical protein XP_002344149 [Homo
sapiens]
Length = 330
Score = 27.3 bits (59), Expect = 4.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 80 PGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAA 117
P +R V +QA EA+G AW R R P A AA
Sbjct: 225 PRLRIPVWLQALQEASGLGAWGARCGRDPGSAPAAGAA 262
>gi|41406097 dishevelled 3 [Homo sapiens]
Length = 716
Score = 27.3 bits (59), Expect = 4.6
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 4 TSGDASSSPRTASSLRLGIRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGSLLP 63
+ G S S T S G R+ + +G + H + L + + HPS
Sbjct: 598 SGGSGSESDHTTRSSLRGPRERAPSERSGPAASEHSHRSHHSLASSLRSHHTHPSYGPPG 657
Query: 64 VCPALLVPVLRLP-----VGHPGIRAG 85
V P P+L +P +G PG G
Sbjct: 658 VPPLYGPPMLMMPPPPAAMGPPGAPPG 684
>gi|26051231 lactamase, beta isoform a [Homo sapiens]
Length = 547
Score = 27.3 bits (59), Expect = 4.6
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 77 VGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEVDVGTVLLEEGGLQAEG 136
VG PGI GV++ + + +A +R P +P+ + A + ++ L G
Sbjct: 122 VGAPGIVVGVSVDGKEVWSEGLGYADVENRVPCKPETVMRIASISKSLTMVALAKLWEAG 181
Query: 137 ALQLPL 142
L L +
Sbjct: 182 KLDLDI 187
>gi|26051233 lactamase, beta isoform b [Homo sapiens]
Length = 373
Score = 27.3 bits (59), Expect = 4.6
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 77 VGHPGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEVDVGTVLLEEGGLQAEG 136
VG PGI GV++ + + +A +R P +P+ + A + ++ L G
Sbjct: 122 VGAPGIVVGVSVDGKEVWSEGLGYADVENRVPCKPETVMRIASISKSLTMVALAKLWEAG 181
Query: 137 ALQLPL 142
L L +
Sbjct: 182 KLDLDI 187
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 27.3 bits (59), Expect = 4.6
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 80 PGIRAGVNIQARAEAAGPRAWAGRGSRQPLEPDAEVAAAEVDVGTVLLEEGGLQAEGA-L 138
PG +G ++A + PR A RG AEV +++ V+ G + A G +
Sbjct: 43 PGASSGPGVRAGSRRKIPRKEALRGGSSRAAGAAEVRPGVLELLAVVQSRGSMLAPGLHM 102
Query: 139 QLP 141
QLP
Sbjct: 103 QLP 105
>gi|169210481 PREDICTED: hypothetical protein [Homo sapiens]
Length = 143
Score = 26.9 bits (58), Expect = 6.0
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 11 SPRTASSLRLGIRK--------LLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGSLL 62
+PR AS R G+ + G QGAR L + E P+ +
Sbjct: 7 APRRASRARRGLAPWDGAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPH 66
Query: 63 PVCPALLVPVLRLPVGHPGIRAGVNIQAR--AEAAGPRAWAGRGSRQPLEPDA 113
P PA P L G + +IQ + A+ + R WAG+ + EP+A
Sbjct: 67 PRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQREPEA 119
>gi|239750425 PREDICTED: hypothetical protein XP_002347391 [Homo
sapiens]
Length = 341
Score = 26.9 bits (58), Expect = 6.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 39 QHLFRNLLHAHVVDEEVHPSGSL-LPVCPALLVPVLRLPVGHP 80
+H F H V PSG+L +PV +L PV R P HP
Sbjct: 234 EHFFLVCTPQHHVVLHPIPSGALAIPVARSLSWPVYRDPASHP 276
>gi|169210045 PREDICTED: hypothetical protein [Homo sapiens]
Length = 143
Score = 26.9 bits (58), Expect = 6.0
Identities = 30/113 (26%), Positives = 44/113 (38%), Gaps = 10/113 (8%)
Query: 11 SPRTASSLRLGIRK--------LLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGSLL 62
+PR AS R G+ + G QGAR L + E P+ +
Sbjct: 7 APRRASRARRGLAPWDGAGAGAVTGPCPAAAQGARGSWPSPRCLPSDGGAREAPPTSAPH 66
Query: 63 PVCPALLVPVLRLPVGHPGIRAGVNIQAR--AEAAGPRAWAGRGSRQPLEPDA 113
P PA P L G + +IQ + A+ + R WAG+ + EP+A
Sbjct: 67 PRRPAGSPPALADREGRRSLVPQTSIQGQNFAQLSLARPWAGKRGHRQREPEA 119
>gi|239742020 PREDICTED: hypothetical protein XP_002342373 [Homo
sapiens]
Length = 202
Score = 26.9 bits (58), Expect = 6.0
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 13/91 (14%)
Query: 22 IRKLLGQQLNGEQGARPQHLFRNLLHAHVVDEEVHPSGSLLPVCPALLVPVLRLPVGHPG 81
+R L+G LN QG RP L + +H + + LP L +L L G
Sbjct: 36 LRMLIGVPLNQPQGLRPTTL--SCIHLGGLQQG-------LPTPRRLSAAMLALRAGGEQ 86
Query: 82 I-RAGVNIQARAEAAGPRAWAGRGSRQPLEP 111
+ G + QAR W RG R P P
Sbjct: 87 VCSCGASAQARGWFC---CWGARGHRPPSGP 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,983,333
Number of Sequences: 37866
Number of extensions: 285016
Number of successful extensions: 844
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 828
Number of HSP's gapped (non-prelim): 37
length of query: 145
length of database: 18,247,518
effective HSP length: 92
effective length of query: 53
effective length of database: 14,763,846
effective search space: 782483838
effective search space used: 782483838
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.