Guide to the Human Genome
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Name: LOC100129169 Sequence: fasta or formatted (245aa) NCBI GI: 239741819
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {245aa} PREDICTED: hypothetical protein
alt mRNA {245aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         31           3
 C cysteine            0.4          1           1
 D aspartate           3.3          8           2
 E glutamate           6.5         16           1
 F phenylalanine       2.4          6           1
 G glycine            10.2         25           2
 H histidine           2.9          7           2
 I isoleucine          3.7          9           1
 K lysine              6.9         17           1
 L leucine            10.6         26           2
 M methionine          1.6          4           1
 N asparagine          0.8          2           1
 P proline             5.7         14           2
 Q glutamine           5.3         13           1
 R arginine            8.2         20           2
 S serine              7.3         18           2
 T threonine           3.7          9           2
 V valine              6.1         15           1
 W tryptophan          1.6          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129169          1.000   PREDICTED: hypothetical protein 
LOC100129169          1.000   PREDICTED: hypothetical protein 
LOC100292370          0.024   PREDICTED: hypothetical protein 
ALPK3                 0.022   alpha-kinase 3 
KIAA0368              0.022   KIAA0368 protein 
LOC338758             0.020   PREDICTED: hypothetical protein 
LOC100292035          0.020   PREDICTED: hypothetical protein XP_002345623 
LOC338758             0.020   PREDICTED: hypothetical protein 
LOC338758             0.020   PREDICTED: hypothetical protein 
LOC100291596          0.017   PREDICTED: hypothetical protein XP_002344746 
LOC100289969          0.017   PREDICTED: hypothetical protein XP_002347692 
LOC100288068          0.017   PREDICTED: hypothetical protein XP_002343259 
ACAP1                 0.017   centaurin beta1 
DLGAP2                0.015   discs large-associated protein 2 
MIDN                  0.015   midnolin 
LOC100292568          0.015   PREDICTED: hypothetical protein 
LOC100291146          0.015   PREDICTED: hypothetical protein XP_002346600 
LOC100289534          0.015   PREDICTED: hypothetical protein XP_002342442 
ZNF716                0.013   PREDICTED: zinc finger protein 716 
TMEM88B               0.013   PREDICTED: hypothetical protein LOC643965 
TMEM88B               0.013   PREDICTED: hypothetical protein LOC643965 
NAT14                 0.013   N-acetyltransferase 14 
SLC12A9               0.013   solute carrier family 12 (potassium/chloride transpo...
LOC100293182          0.013   PREDICTED: hypothetical protein 
LOC100292383          0.013   PREDICTED: hypothetical protein 
LOC100132605          0.013   PREDICTED: hypothetical protein 
GRM1                  0.013   glutamate receptor, metabotropic 1 isoform beta pre...
GRM1                  0.013   glutamate receptor, metabotropic 1 isoform alpha pr...
C1orf106              0.013   hypothetical protein LOC55765 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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