Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289982 Sequence: fasta or formatted (155aa) NCBI GI: 239750175
Description:

PREDICTED: hypothetical protein XP_002347304

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.2         22           2
 C cysteine            1.3          2           1
 D aspartate           0.0          0           0
 E glutamate           5.2          8           1
 F phenylalanine       1.3          2           1
 G glycine             9.7         15           3
 H histidine           5.8          9           1
 I isoleucine          1.3          2           1
 K lysine              1.3          2           1
 L leucine            29.0         45           3
 M methionine          1.9          3           1
 N asparagine          0.0          0           0
 P proline             2.6          4           1
 Q glutamine           9.7         15           1
 R arginine            4.5          7           1
 S serine              1.3          2           1
 T threonine           0.0          0           0
 V valine             10.3         16           2
 W tryptophan          0.6          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347304 
LOC100293050          1.000   PREDICTED: hypothetical protein 
LOC100288634          1.000   PREDICTED: hypothetical protein XP_002343172 
LOC100292595          0.026   PREDICTED: hypothetical protein 
LOC100290895          0.026   PREDICTED: hypothetical protein XP_002348072 
LOC100287206          0.026   PREDICTED: hypothetical protein XP_002343750 
LOC100292362          0.019   PREDICTED: hypothetical protein 
LOC100290531          0.019   PREDICTED: hypothetical protein XP_002347966 
LOC100288045          0.019   PREDICTED: hypothetical protein XP_002343660 
GDPD2                 0.015   osteoblast differentiation promoting factor protein ...
LOC100291449          0.015   PREDICTED: hypothetical protein XP_002347251 
LOC100289009          0.015   PREDICTED: hypothetical protein XP_002343116 
C6orf47               0.015   G4 protein 
LOC100289317          0.011   PREDICTED: hypothetical protein XP_002343823 
EMR2                  0.011   egf-like module containing, mucin-like, hormone rece...
EMR2                  0.011   egf-like module containing, mucin-like, hormone rece...
EMR2                  0.011   egf-like module containing, mucin-like, hormone rece...
EMR2                  0.011   egf-like module containing, mucin-like, hormone rece...
EMR2                  0.011   egf-like module containing, mucin-like, hormone rece...
EMR2                  0.011   egf-like module containing, mucin-like, hormone rece...
EMR2                  0.011   egf-like module containing, mucin-like, hormone rece...
PHLDB1                0.011   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.011   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.011   pleckstrin homology-like domain, family B, member 1 ...
DNHD1                 0.011   dynein heavy chain domain 1 isoform 1 
ADAL                  0.007   adenosine deaminase-like isoform 2 
TXNDC16               0.007   thioredoxin domain containing 16 isoform 2 
TXNDC16               0.007   thioredoxin domain containing 16 isoform 1 
GBF1                  0.007   golgi-specific brefeldin A resistant guanine nucleoti...
OR51S1                0.007   olfactory receptor, family 51, subfamily S, member 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press