Guide to the Human Genome
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Name: DMD Sequence: fasta or formatted (635aa) NCBI GI: 5032299

dystrophin Dp71b isoform

Referenced in:

Spectrin and Plectin Families

Other entries for this name:
alt prot [2344aa] dystrophin Dp260-1 isoform
alt prot [3677aa] dystrophin Dp427c isoform
alt prot [3685aa] dystrophin Dp427m isoform
alt prot [3562aa] dystrophin Dp427l isoform
alt prot [3681aa] dystrophin Dp427p1 isoform
alt prot [2341aa] dystrophin Dp260-2 isoform
alt prot [1225aa] dystrophin Dp140 isoform
alt prot [956aa] dystrophin Dp116 isoform
alt prot [617aa] dystrophin Dp71 isoform
alt prot [604aa] dystrophin Dp71a isoform
alt prot [622aa] dystrophin Dp71ab isoform
alt prot [340aa] dystrophin Dp40 isoform
alt prot [1105aa] dystrophin Dp140c isoform
alt prot [1243aa] dystrophin Dp140b isoform
alt prot [1230aa] dystrophin Dp140ab isoform
alt prot [1133aa] dystrophin Dp140bc isoform
alt prot [3562aa] dystrophin Dp427p2 isoform

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         37           3
 C cysteine            2.5         16           1
 D aspartate           5.7         36           2
 E glutamate           7.7         49           3
 F phenylalanine       2.8         18           2
 G glycine             4.3         27           2
 H histidine           3.8         24           1
 I isoleucine          3.9         25           2
 K lysine              4.3         27           1
 L leucine            12.0         76           3
 M methionine          3.3         21           2
 N asparagine          4.7         30           2
 P proline             5.4         34           2
 Q glutamine           6.3         40           2
 R arginine            6.3         40           2
 S serine              9.1         58           2
 T threonine           4.4         28           2
 V valine              4.4         28           2
 W tryptophan          0.8          5           1
 Y tyrosine            2.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI


Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dystrophin Dp71b isoform 
DMD                   0.990   dystrophin Dp140b isoform 
DMD                   0.971   dystrophin Dp71ab isoform 
DMD                   0.960   dystrophin Dp140ab isoform 
DMD                   0.954   dystrophin Dp71 isoform 
DMD                   0.943   dystrophin Dp427c isoform 
DMD                   0.943   dystrophin Dp116 isoform 
DMD                   0.943   dystrophin Dp260-2 isoform 
DMD                   0.943   dystrophin Dp260-1 isoform 
DMD                   0.943   dystrophin Dp427p2 isoform 
DMD                   0.943   dystrophin Dp427p1 isoform 
DMD                   0.943   dystrophin Dp140 isoform 
DMD                   0.943   dystrophin Dp427l isoform 
DMD                   0.943   dystrophin Dp427m isoform 
DMD                   0.925   dystrophin Dp71a isoform 
UTRN                  0.686   utrophin 
DMD                   0.541   dystrophin Dp40 isoform 
DRP2                  0.534   dystrophin related protein 2 
DMD                   0.532   dystrophin Dp140bc isoform 
DMD                   0.516   dystrophin Dp140c isoform 
DTNA                  0.156   dystrobrevin alpha isoform 2 
DTNA                  0.151   dystrobrevin alpha isoform 1 
DTNA                  0.144   dystrobrevin alpha isoform 5 
DTNB                  0.140   dystrobrevin, beta isoform 1 
DTNA                  0.140   dystrobrevin alpha isoform 3 
DTNA                  0.138   dystrobrevin alpha isoform 4 
DTNB                  0.136   dystrobrevin, beta isoform 4 
DTNB                  0.135   dystrobrevin, beta isoform 2 
DTNB                  0.132   dystrobrevin, beta isoform 3 
DTNB                  0.131   dystrobrevin, beta isoform 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.

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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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