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Search of human proteins with 239751963
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751963 PREDICTED: similar to hCG2019076 [Homo sapiens]
(231 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757444 PREDICTED: similar to hCG2019076 [Homo sapiens] 497 e-141
gi|239751963 PREDICTED: similar to hCG2019076 [Homo sapiens] 497 e-141
gi|239746445 PREDICTED: hypothetical protein XP_002344224 [Homo ... 497 e-141
gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 44 9e-05
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 42 6e-04
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 42 6e-04
gi|56549696 E1A binding protein p400 [Homo sapiens] 41 8e-04
gi|115511036 alpha-kinase 3 [Homo sapiens] 41 8e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni... 41 8e-04
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 40 0.001
gi|210032580 SET domain containing 1B [Homo sapiens] 40 0.002
gi|148762940 DVL-binding protein DAPLE [Homo sapiens] 40 0.002
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 39 0.004
gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] 39 0.005
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 39 0.005
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 38 0.006
gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1... 38 0.008
gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 37 0.011
gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 37 0.011
gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform ... 37 0.011
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 37 0.014
gi|19924099 synapsin I isoform Ia [Homo sapiens] 37 0.014
gi|19924097 synapsin I isoform Ib [Homo sapiens] 37 0.014
gi|22027541 programmed cell death 7 [Homo sapiens] 37 0.014
gi|33286436 gametogenetin [Homo sapiens] 37 0.019
gi|32483397 dopamine receptor D4 [Homo sapiens] 36 0.024
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 36 0.024
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens] 36 0.024
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 36 0.024
>gi|239757444 PREDICTED: similar to hCG2019076 [Homo sapiens]
Length = 231
Score = 497 bits (1280), Expect = e-141
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MSLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASP 60
MSLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASP
Sbjct: 1 MSLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASP 60
Query: 61 GSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIP 120
GSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIP
Sbjct: 61 GSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIP 120
Query: 121 CNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWLDRPLTRLGAAAPVFCGPR 180
CNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWLDRPLTRLGAAAPVFCGPR
Sbjct: 121 CNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWLDRPLTRLGAAAPVFCGPR 180
Query: 181 PGEDQSFVLGDSCLSCFSTNAHAPLSHNEPLRPTTDPGICCRGWKGPTREA 231
PGEDQSFVLGDSCLSCFSTNAHAPLSHNEPLRPTTDPGICCRGWKGPTREA
Sbjct: 181 PGEDQSFVLGDSCLSCFSTNAHAPLSHNEPLRPTTDPGICCRGWKGPTREA 231
>gi|239751963 PREDICTED: similar to hCG2019076 [Homo sapiens]
Length = 231
Score = 497 bits (1280), Expect = e-141
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MSLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASP 60
MSLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASP
Sbjct: 1 MSLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASP 60
Query: 61 GSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIP 120
GSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIP
Sbjct: 61 GSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIP 120
Query: 121 CNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWLDRPLTRLGAAAPVFCGPR 180
CNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWLDRPLTRLGAAAPVFCGPR
Sbjct: 121 CNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWLDRPLTRLGAAAPVFCGPR 180
Query: 181 PGEDQSFVLGDSCLSCFSTNAHAPLSHNEPLRPTTDPGICCRGWKGPTREA 231
PGEDQSFVLGDSCLSCFSTNAHAPLSHNEPLRPTTDPGICCRGWKGPTREA
Sbjct: 181 PGEDQSFVLGDSCLSCFSTNAHAPLSHNEPLRPTTDPGICCRGWKGPTREA 231
>gi|239746445 PREDICTED: hypothetical protein XP_002344224 [Homo
sapiens]
Length = 231
Score = 497 bits (1280), Expect = e-141
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MSLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASP 60
MSLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASP
Sbjct: 1 MSLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASP 60
Query: 61 GSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIP 120
GSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIP
Sbjct: 61 GSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIP 120
Query: 121 CNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWLDRPLTRLGAAAPVFCGPR 180
CNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWLDRPLTRLGAAAPVFCGPR
Sbjct: 121 CNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWLDRPLTRLGAAAPVFCGPR 180
Query: 181 PGEDQSFVLGDSCLSCFSTNAHAPLSHNEPLRPTTDPGICCRGWKGPTREA 231
PGEDQSFVLGDSCLSCFSTNAHAPLSHNEPLRPTTDPGICCRGWKGPTREA
Sbjct: 181 PGEDQSFVLGDSCLSCFSTNAHAPLSHNEPLRPTTDPGICCRGWKGPTREA 231
>gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens]
Length = 845
Score = 44.3 bits (103), Expect = 9e-05
Identities = 50/192 (26%), Positives = 66/192 (34%), Gaps = 27/192 (14%)
Query: 7 SPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAG 66
S +P PP P + P + + G P PSG + P PP S A
Sbjct: 479 SEVPRPPEPSQGPSTTSSGGGTGPHPPSGT----TLRPPTSSTPGGPPGAENSTSHQPAT 534
Query: 67 TGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIPCNRQP- 125
GG + P S+ +P S+ S Q A + G A P QP
Sbjct: 535 PGGDTAQTPKPGTSQPMPPGVGTST------------SHQPATPSGGTAQTPEPGTSQPM 582
Query: 126 PPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWL-----DRPLTRLGAAAPVFCGPR 180
PP + T+ P T PG + P S+P + +P T G A P
Sbjct: 583 PPSMGTSTSHQPAT--PGGGTAQTPEAGTSQPMPPGMGTSTSHQPTTPGGGTAQT---PE 637
Query: 181 PGEDQSFVLGDS 192
PG Q L S
Sbjct: 638 PGTSQPMPLSKS 649
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 41.6 bits (96), Expect = 6e-04
Identities = 51/186 (27%), Positives = 64/186 (34%), Gaps = 24/186 (12%)
Query: 5 PLSPLP--DPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGS 62
P +PLP DP P R P R P P+ PQR PP GA +
Sbjct: 1129 PATPLPQKDPAQPLEPKRPPPPRPVAPPTRPA-------------PPQRPPPPSGARSPA 1175
Query: 63 LGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIPCN 122
GG+ A +P ++R A R R S Q A PGPA S
Sbjct: 1176 PTRKEFGGIGAPPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARP 1235
Query: 123 RQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQ-----TWLDRPLTRLGAAAPVFC 177
PP + + G +L ES SK + T+L PL A P
Sbjct: 1236 TIPPRAGVISAPQSHARASAG----RLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSS 1291
Query: 178 GPRPGE 183
P P +
Sbjct: 1292 LPPPAQ 1297
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 41.6 bits (96), Expect = 6e-04
Identities = 51/186 (27%), Positives = 64/186 (34%), Gaps = 24/186 (12%)
Query: 5 PLSPLP--DPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGS 62
P +PLP DP P R P R P P+ PQR PP GA +
Sbjct: 1129 PATPLPQKDPAQPLEPKRPPPPRPVAPPTRPA-------------PPQRPPPPSGARSPA 1175
Query: 63 LGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIPCN 122
GG+ A +P ++R A R R S Q A PGPA S
Sbjct: 1176 PTRKEFGGIGAPPSPGVARREMEAPKSPGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARP 1235
Query: 123 RQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQ-----TWLDRPLTRLGAAAPVFC 177
PP + + G +L ES SK + T+L PL A P
Sbjct: 1236 TIPPRAGVISAPQSHARASAG----RLTPESQSKTSETSKGSTFLPEPLKPQAAFPPQSS 1291
Query: 178 GPRPGE 183
P P +
Sbjct: 1292 LPPPAQ 1297
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 41.2 bits (95), Expect = 8e-04
Identities = 39/145 (26%), Positives = 52/145 (35%), Gaps = 28/145 (19%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLG 64
P P P PP P + P P + P G Q P+ +PQ P A +
Sbjct: 2506 PPPPQPQPPPPPQQPPPPLPQPQAAGSQPPA-GPPAVQPQPQPQPQTQPQPVQAPAKAQP 2564
Query: 65 AGTGGGVSAATAPYLSRAL----------------------PAATFLSSQRRWGGGDRIG 102
A T GG +A A + ++ PAATF S +R
Sbjct: 2565 AITTGGSAAVLAGTIKTSVTGTSMPTGAVSGNVIVNTIAGVPAATFQSINKRLASPVA-- 2622
Query: 103 GSDQGACATPGPAHPSIPCNRQPPP 127
GA TPG + P+ + QPPP
Sbjct: 2623 ---PGALTTPGGSAPAQVVHTQPPP 2644
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 41.2 bits (95), Expect = 8e-04
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 10 PDPPSPFRSPRSP-RTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAGTG 68
P PP + PR P R R G Q + R A +P+ G PG+ GA
Sbjct: 130 PAPPGVSK-PRCPGRARPGEGQQQVT-TARPPAINRGARQPRAGAAAAGRGPGA-GAWRT 186
Query: 69 GGVSAATAPYLSRALPAATFLSSQRRWGGGDRIG----GSDQGACATPGPAHPSIPCNRQ 124
G +A+ P + + + R WG G R G G D G P PA S + +
Sbjct: 187 GEAAASAGPAVGEGGAMGSRRAPSRGWGAGGRSGAGGDGEDDGPVWIPSPASRSYLLSVR 246
Query: 125 PPPLLTTTRYAYP 137
P L++ R ++P
Sbjct: 247 PETSLSSNRLSHP 259
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 41.2 bits (95), Expect = 8e-04
Identities = 39/147 (26%), Positives = 47/147 (31%), Gaps = 19/147 (12%)
Query: 5 PLSPLPDPPSPFRSPRSPR-----TRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGAS 59
P P PPSP P +P T P P G + + P PP P S
Sbjct: 963 PTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGS 1022
Query: 60 PGSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATP----GPA 115
P + G A P + PAAT L G A P GPA
Sbjct: 1023 PAATPFPKGASTPPAATPPSPKGSPAATPLPK----------GAPTTPAATLPSPKGGPA 1072
Query: 116 HPSIPCNRQPPPLLTTTRYAYPVTRNP 142
PS+ PP + P T +P
Sbjct: 1073 TPSLKGAPTPPAATPPSPKGGPATPSP 1099
Score = 30.4 bits (67), Expect = 1.3
Identities = 34/125 (27%), Positives = 45/125 (36%), Gaps = 24/125 (19%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLG 64
P +P PSP P +P + P + + P P+ AP P A+P S
Sbjct: 1057 PTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATP--SPKGAPMPPAATPPSPK 1114
Query: 65 AGTGGGVSAATAPYL-SRALPAATFLSSQRRWGGGDRIGGSDQGACATPGP-AHPSIPCN 122
G AT P+ + PAAT S +G ATP P P+ P
Sbjct: 1115 GG------LATPPHKGAPTTPAAT--------------PPSPKGGLATPPPKGAPTTPAA 1154
Query: 123 RQPPP 127
P P
Sbjct: 1155 TPPSP 1159
Score = 30.0 bits (66), Expect = 1.7
Identities = 29/121 (23%), Positives = 41/121 (33%), Gaps = 28/121 (23%)
Query: 8 PLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAGT 67
P PPSP R P P + P P+ + L P++AP P G+
Sbjct: 1382 PAMTPPSPKRGPAIPSPKGD--PTSPAVIP---------LSPKKAPATPVTREGAATPSK 1430
Query: 68 GGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATP-GPAHPSIPCNRQPP 126
G A P + PA + + +G ATP P++P P
Sbjct: 1431 GDLTPPAVTPVSLKKAPATS----------------APKGGPATPSSKGDPTLPAVTPPS 1474
Query: 127 P 127
P
Sbjct: 1475 P 1475
Score = 28.1 bits (61), Expect = 6.6
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCL--PQVPS---GVGRECAQQHPRLEPQRAPPVPGAS 59
P P PPSP +P P T P PS G A + P PP P
Sbjct: 1333 PTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRG 1392
Query: 60 PGSLGAGTGGGVSAATAPYLSRALPA 85
P ++ + G S A P + PA
Sbjct: 1393 P-AIPSPKGDPTSPAVIPLSPKKAPA 1417
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 40.4 bits (93), Expect = 0.001
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 15/125 (12%)
Query: 4 CPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSL 63
CP PLP PPS RSP S P+ G P+ PP P A+P L
Sbjct: 38 CP--PLPGPPSRSRSPSSRLKLPADPPRALPG------------SPEPPPPPPPAAPHVL 83
Query: 64 GAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGAC-ATPGPAHPSIPCN 122
GA G + + SR + +R G G R G + A A+P N
Sbjct: 84 GARVAAGPTHRLSASHSRVSSRGPVGTKPKRPGQGRRAGARMRSAAPASPRARAARAISN 143
Query: 123 RQPPP 127
+ PP
Sbjct: 144 QSSPP 148
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 40.4 bits (93), Expect = 0.001
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 15/125 (12%)
Query: 4 CPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSL 63
CP PLP PPS RSP S P+ G P+ PP P A+P L
Sbjct: 38 CP--PLPGPPSRSRSPSSRLKLPADPPRALPG------------SPEPPPPPPPAAPHVL 83
Query: 64 GAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGAC-ATPGPAHPSIPCN 122
GA G + + SR + +R G G R G + A A+P N
Sbjct: 84 GARVAAGPTHRLSASHSRVSSRGPVGTKPKRPGQGRRAGARMRSAAPASPRARAARAISN 143
Query: 123 RQPPP 127
+ PP
Sbjct: 144 QSSPP 148
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 39.7 bits (91), Expect = 0.002
Identities = 44/146 (30%), Positives = 53/146 (36%), Gaps = 22/146 (15%)
Query: 1 MSLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEP----------- 49
+ L P P P PP P P P T P VP A+ HP P
Sbjct: 1276 LPLQPPLPPPRPPRPPSPPPEPETTDASHPSVPP---EPLAEDHPPHTPGLCGSLAKSQS 1332
Query: 50 -QRAPPVPGASPGSLGAGTGGGVSAATAPYLSRALPA-ATFLSSQRRWGGGDRIGGSDQG 107
+ P PG P G +G +S+ P + PA + LSS GG R G D
Sbjct: 1333 TETVPATPGGEPPLSGGSSGLSLSSPQVPGSPFSYPAPSPSLSS----GGLPRTPGRD-- 1386
Query: 108 ACATPGPAHPSIPCNRQPPPLLTTTR 133
TP + PS P PL T R
Sbjct: 1387 FSFTPTFSEPSGPLLLPVCPLPTGRR 1412
>gi|148762940 DVL-binding protein DAPLE [Homo sapiens]
Length = 2028
Score = 39.7 bits (91), Expect = 0.002
Identities = 56/190 (29%), Positives = 77/190 (40%), Gaps = 13/190 (6%)
Query: 31 QVPSGVGRECAQ--QHPRLEPQRAPPVPGAS--PGSLGAGTGGGVSAATAPYLSRALPAA 86
+ P V AQ Q L R PVP AS P S A S A+A L + P A
Sbjct: 1761 EAPPSVAPRQAQPPQSLSLGRPRQAPVPPASHAPASRSASLSRAFSLASADLLRASGPEA 1820
Query: 87 TFLSSQRRWGGGDRIGGSDQGACATPGPAHPSI-PCNRQPPPLLTTTRYAYPVTRNPGCN 145
S ++ G + +GG + G+ PA PS R+ PL+ A + PG
Sbjct: 1821 CKQESPQKLGAPEALGGRETGSHTLQSPAPPSSHSLARERTPLVGK---AGSSCQGPGPR 1877
Query: 146 QEKLPSE--SLSKPEQTWLDRPLTRLGAAAPVFCGPRPGEDQSFVLGDSCLSCFSTNAHA 203
L + SL+ P++ L PL + A AP G + +S L FS A A
Sbjct: 1878 SRPLDTRRFSLAPPKEERL-APLHQ-SATAPAIATAGAGAAAAGSGSNSQLLHFSP-AAA 1934
Query: 204 PLSHNEPLRP 213
P + +P P
Sbjct: 1935 PAARTKPKAP 1944
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 38.9 bits (89), Expect = 0.004
Identities = 35/122 (28%), Positives = 46/122 (37%), Gaps = 10/122 (8%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLG 64
P P+P PP P + + P + Q P Q H + +P PP +S +
Sbjct: 56 PKPPIPPPP-PHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPP--PPPQDSSKPVVA 112
Query: 65 AGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIPCNRQ 124
G G +AP S + P AT +S G G G TP PA S P
Sbjct: 113 QGPGPAPGVGSAPPASSSAPPATPPTSGAPPGSG-------PGPTPTPPPAVTSAPPGAP 165
Query: 125 PP 126
PP
Sbjct: 166 PP 167
>gi|60498978 elastin microfibril interfacer 2 [Homo sapiens]
Length = 1053
Score = 38.5 bits (88), Expect = 0.005
Identities = 44/152 (28%), Positives = 56/152 (36%), Gaps = 19/152 (12%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPV-PGASPGSL 63
P + P PP P +P+ P P+ E + P L PQR P P PGS
Sbjct: 784 PSAKAPSPPPPAEAPKEPLQPEPAPPRPSGPATAEDPGRRPVL-PQRPPEERPPQPPGST 842
Query: 64 G--AGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPG-PAHPSIP 120
G A TG A A R LP + G G G +G PG P P +
Sbjct: 843 GVIAETGQAGPPAGAGVSGRGLPRGV----DGQTGSGTVPGA--EGFAGAPGYPKSPPVA 896
Query: 121 CNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSE 152
P P L V+ + G Q+ PS+
Sbjct: 897 SPGAPVPSL--------VSFSAGLTQKPFPSD 920
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 38.5 bits (88), Expect = 0.005
Identities = 35/122 (28%), Positives = 46/122 (37%), Gaps = 12/122 (9%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGC------LPQVPSGVGRECAQQHPRLEPQRAPPVPGA 58
PL P+P P P T S + + G HP P A P P A
Sbjct: 1601 PLPPVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAA 1660
Query: 59 -SPG-SLGAGTGGGV----SAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATP 112
PG GT G+ S +++ + + +A+ LSS GGG GG GA
Sbjct: 1661 PQPGPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVAS 1720
Query: 113 GP 114
GP
Sbjct: 1721 GP 1722
Score = 34.3 bits (77), Expect = 0.092
Identities = 36/135 (26%), Positives = 47/135 (34%), Gaps = 21/135 (15%)
Query: 12 PPSPFRS----PRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRA---PPVPGASPGSLG 64
PP P P P +G P P R P L R P PGA S
Sbjct: 1010 PPQPHHHHAHPPHPPEMETGGSPDDPPP--RLALGPQPSLRGWRGGGPSPTPGAPSPSHH 1067
Query: 65 AGTGGGVSAATAPYL------SRALPAATFLSSQRRWG------GGDRIGGSDQGACATP 112
GGG ++ P L RA AA ++ ++ G ++ G Q P
Sbjct: 1068 GSAGGGGGSSQGPALRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLP 1127
Query: 113 GPAHPSIPCNRQPPP 127
P+ P + QPPP
Sbjct: 1128 PAPSPTSPASPQPPP 1142
Score = 34.3 bits (77), Expect = 0.092
Identities = 34/116 (29%), Positives = 42/116 (36%), Gaps = 23/116 (19%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASP---G 61
P +P P P P P P T SG V + HP A + S G
Sbjct: 1653 PAAPAPAAPQPGPDP-PPGTDSGI-----EEVDSRSSSDHPLETISSASTLSSLSAEGGG 1706
Query: 62 SLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHP 117
S G G G G A+ P L L + + G GGS +TPGP +P
Sbjct: 1707 SAGGGGGAGAGVASGPEL---------LDTYVAYLDGQAFGGS-----STPGPPYP 1748
Score = 28.9 bits (63), Expect = 3.9
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 5/111 (4%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLG 64
P SP P P S ++ + + PS + Q E + P P G
Sbjct: 1135 PASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAE-----PPTQPEPTG 1189
Query: 65 AGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPA 115
G GGG S + AP +S P+ + + + G + + Q A G A
Sbjct: 1190 GGGGGGSSPSPAPAMSPVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAA 1240
Score = 28.5 bits (62), Expect = 5.1
Identities = 33/119 (27%), Positives = 42/119 (35%), Gaps = 36/119 (30%)
Query: 6 LSPLPDP---PSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLE-PQRAPPVPGASPG 61
+ PLP P + F P SP T P P HP + P A P+P P
Sbjct: 1564 VEPLPPPLEFSNSFEKPESPLT-----PGPP----------HPLPDTPAPATPLPPVPPP 1608
Query: 62 SLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIP 120
++ AA P L + T S+ + QGA A PG HP P
Sbjct: 1609 AV---------AAAPPTLDSTASSLTSYDSE--------VATLTQGASAAPGDPHPPGP 1650
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 38.1 bits (87), Expect = 0.006
Identities = 57/208 (27%), Positives = 78/208 (37%), Gaps = 19/208 (9%)
Query: 2 SLCPLSPLPDPPSPFRSPRSPRTRSGCLPQ-VPSGVGRECAQQHPRLEPQRAPPVPGASP 60
SL SP+P P+P +P S +T LP VPS + + Q L P AP + G+SP
Sbjct: 1641 SLASASPVP-APTPVLAPSSTQTM---LPAPVPSPLPSPASTQTLALAPALAPTLGGSSP 1696
Query: 61 G---SLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHP 117
SLG G G L+ A + G +G + + A P P
Sbjct: 1697 SQTLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSLAPGPPLGPTQTLSLAPAPPLAP 1756
Query: 118 SIPCNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQTWLDRPLTRLGAAAPVFC 177
+ P P A+ +T P + L + + S T P+ LG AA
Sbjct: 1757 ASPVGPAP---------AHTLTLAPASSSASLLAPA-SVQTLTLSPAPVPTLGPAAAQTL 1806
Query: 178 GPRPGEDQSFVLGDSCLSCFSTNAHAPL 205
P QS S L S + APL
Sbjct: 1807 ALAPASTQSPASQASSL-VVSASGAAPL 1833
Score = 27.7 bits (60), Expect = 8.7
Identities = 25/67 (37%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQV-PSGVGRECAQQHP-----RLEPQRAPPV--- 55
PL P PP P P + SG LPQV PS +G P L+P PV
Sbjct: 1059 PLIPASRPPGPVLLP-PLQPNSGSLPQVLPSPLGVLSGTSRPPTPTLSLKPTPPAPVRLS 1117
Query: 56 PGASPGS 62
P PGS
Sbjct: 1118 PAPPPGS 1124
>gi|226817313 SH3 and multiple ankyrin repeat domains 2 isoform 1
[Homo sapiens]
Length = 1849
Score = 37.7 bits (86), Expect = 0.008
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 13 PSPFRSPRSPRTR--SGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAGTGGG 70
P P +PR P G P GR P+ +P VP AS G+ AG G
Sbjct: 1144 PMPSATPREPENHFVGGAEASAPGEAGRPLNSTSKAQGPESSPAVPSASSGT--AGPGNY 1201
Query: 71 VSAATAPYLSRALPAATFLSSQRR 94
V T L + P A LS++ R
Sbjct: 1202 VHPLTGRLLDPSSPLALALSARDR 1225
>gi|217035107 pre-mRNA cleavage factor I, 59 kDa subunit isoform 3
[Homo sapiens]
Length = 462
Score = 37.4 bits (85), Expect = 0.011
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 2 SLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVG-RECAQQHPRLEPQRAPPVPGASP 60
S PL LP PP P P P + S +P P G+ + PRL P A P PGA P
Sbjct: 221 SALPLMGLPPPPIP---PPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVPPPGAIP 277
Query: 61 GSL 63
+L
Sbjct: 278 PAL 280
>gi|209862881 pre-mRNA cleavage factor I, 59 kDa subunit isoform 2
[Homo sapiens]
Length = 471
Score = 37.4 bits (85), Expect = 0.011
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 2 SLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVG-RECAQQHPRLEPQRAPPVPGASP 60
S PL LP PP P P P + S +P P G+ + PRL P A P PGA P
Sbjct: 230 SALPLMGLPPPPIP---PPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVPPPGAIP 286
Query: 61 GSL 63
+L
Sbjct: 287 PAL 289
>gi|217035102 pre-mRNA cleavage factor I, 59 kDa subunit isoform 1
[Homo sapiens]
Length = 514
Score = 37.4 bits (85), Expect = 0.011
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 2 SLCPLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVG-RECAQQHPRLEPQRAPPVPGASP 60
S PL LP PP P P P + S +P P G+ + PRL P A P PGA P
Sbjct: 273 SALPLMGLPPPPIP---PPPPLSSSFGVPPPPPGIHYQHLMPPPPRLPPHLAVPPPGAIP 329
Query: 61 GSL 63
+L
Sbjct: 330 PAL 332
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 37.0 bits (84), Expect = 0.014
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 16/88 (18%)
Query: 42 QQHPRLEPQRAPPVPGASPGSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRI 101
Q P L R+PP SP G G+GGG + P S W G
Sbjct: 205 QDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLES--------------WLGPPLP 250
Query: 102 GGSDQGACATP--GPAHPSIPCNRQPPP 127
GG + P GP S+P + PPP
Sbjct: 251 GGGATALQSLPGFGPPAQSLPASYTPPP 278
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 37.0 bits (84), Expect = 0.014
Identities = 47/175 (26%), Positives = 56/175 (32%), Gaps = 18/175 (10%)
Query: 14 SPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAGTGGGVSA 73
SP R G LP +GR+ +QQ Q+ PP G P G G
Sbjct: 427 SPGRGSHGQTPSPGALP-----LGRQTSQQPAGPPAQQRPPPQGGPPQP-----GPGPQR 476
Query: 74 ATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIPCNRQPPPLLTTTR 133
P R P Q G G G +P A P P ++ PP R
Sbjct: 477 QGPPLQQRPPPQG----QQHLSGLGPPAGSPLPQRLPSPTSA-PQQPASQAAPPTQGQGR 531
Query: 134 YAYPVTRNPGCNQEKLPSESLSKPEQT---WLDRPLTRLGAAAPVFCGPRPGEDQ 185
+ PV PG P S S Q R + G A P G PG Q
Sbjct: 532 QSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQ 586
Score = 33.9 bits (76), Expect = 0.12
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 10 PDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAGTGG 69
P PP P SP G P G G A++ + P +P P SPGS +G GG
Sbjct: 28 PQPPPPPPGAHSP----GATP----GPGTATAERSSGVAPAASPAAP--SPGS--SGGGG 75
Query: 70 GVSA-ATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACAT 111
S+ + A + A AATF + GGG GG+ +G A+
Sbjct: 76 FFSSLSNAVKQTTAAAAATF---SEQVGGGS--GGAGRGGAAS 113
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 37.0 bits (84), Expect = 0.014
Identities = 47/175 (26%), Positives = 56/175 (32%), Gaps = 18/175 (10%)
Query: 14 SPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAGTGGGVSA 73
SP R G LP +GR+ +QQ Q+ PP G P G G
Sbjct: 427 SPGRGSHGQTPSPGALP-----LGRQTSQQPAGPPAQQRPPPQGGPPQP-----GPGPQR 476
Query: 74 ATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIPCNRQPPPLLTTTR 133
P R P Q G G G +P A P P ++ PP R
Sbjct: 477 QGPPLQQRPPPQG----QQHLSGLGPPAGSPLPQRLPSPTSA-PQQPASQAAPPTQGQGR 531
Query: 134 YAYPVTRNPGCNQEKLPSESLSKPEQT---WLDRPLTRLGAAAPVFCGPRPGEDQ 185
+ PV PG P S S Q R + G A P G PG Q
Sbjct: 532 QSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQ 586
Score = 33.9 bits (76), Expect = 0.12
Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 10 PDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAGTGG 69
P PP P SP G P G G A++ + P +P P SPGS +G GG
Sbjct: 28 PQPPPPPPGAHSP----GATP----GPGTATAERSSGVAPAASPAAP--SPGS--SGGGG 75
Query: 70 GVSA-ATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACAT 111
S+ + A + A AATF + GGG GG+ +G A+
Sbjct: 76 FFSSLSNAVKQTTAAAAATF---SEQVGGGS--GGAGRGGAAS 113
>gi|22027541 programmed cell death 7 [Homo sapiens]
Length = 485
Score = 37.0 bits (84), Expect = 0.014
Identities = 33/123 (26%), Positives = 42/123 (34%), Gaps = 9/123 (7%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLG 64
P P P PP+PF P P P +P G P L+P A ++ S G
Sbjct: 14 PPPPQPPPPAPFGCPPPPLPSPAFPPPLPQRPGPFPGASAPFLQPPLALQPRASAEASRG 73
Query: 65 AGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIPCNRQ 124
G G P L P R + G D ++ PGP P P +
Sbjct: 74 GGGAGAFYPVPPPPLPPPPPQC------RPFPGTD---AGERPRPPPPGPGPPWSPRWPE 124
Query: 125 PPP 127
PP
Sbjct: 125 APP 127
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 36.6 bits (83), Expect = 0.019
Identities = 51/185 (27%), Positives = 64/185 (34%), Gaps = 47/185 (25%)
Query: 7 SPLPDPPSPFRSPRSP-----RTRSGCLPQVPSGVGRECAQQHPRLE----------PQR 51
+P P PR+ R R G P G + A L P
Sbjct: 194 TPASPPTESQAGPRNQGQTAGRARGGAPPHAGEGEMAQPADSESGLSLLCKITFKSRPSL 253
Query: 52 APPVPGAS---PGSLGAGTGGGVSAAT-----APYLSRA-LP--AATFLSSQRRWGGGDR 100
APP +S SLG G GGG+ AA+ A L + LP AA L R G +
Sbjct: 254 APPAASSSLAAKASLGGGGGGGLFAASGAISYAEVLKQGPLPPGAARPLGEVSR-GAQEA 312
Query: 101 IGGSDQGACATPGPAHPSIPCNRQPPPLLTTTRYAYPVTRNPGCNQEKLPSESLSKPEQT 160
GG G + P+ P+ PPP P T PG SKP+
Sbjct: 313 EGGDGDGEGCSGPPSAPASQARALPPP---------PYTTFPG-----------SKPKFD 352
Query: 161 WLDRP 165
W+ P
Sbjct: 353 WVSAP 357
Score = 30.4 bits (67), Expect = 1.3
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLG 64
P P P PP + P T P + G+G + + P P PP A
Sbjct: 438 PPLPPPTPPPTLQPPALQPTPLPVAPPLTPGLGHKESALAPTAAP-ALPPALAADQAPAP 496
Query: 65 AGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDR 100
+ A +P +S PAA + ++ R G R
Sbjct: 497 SPAPAPTVAEPSPPVSAPAPAAAPIKTRTRRNKGSR 532
>gi|32483397 dopamine receptor D4 [Homo sapiens]
Length = 419
Score = 36.2 bits (82), Expect = 0.024
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 16/99 (16%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQVPS----GVGRECAQQHPRLE-----PQRAPPV 55
P P P PP+P R P+ P C P P G +CA P L P APP
Sbjct: 241 PGPPSPTPPAP-RLPQDP-CGPDCAPPAPGLPRGPCGPDCAPAAPSLPQDPCGPDCAPPA 298
Query: 56 PGASPGSLGAGTGGGVSAATAPYLSRALPAATFLSSQRR 94
PG P G+ + A ALP T ++RR
Sbjct: 299 PGLPPDPCGSNCAPPDAVRAA-----ALPPQTPPQTRRR 332
Score = 31.2 bits (69), Expect = 0.78
Identities = 37/119 (31%), Positives = 40/119 (33%), Gaps = 48/119 (40%)
Query: 10 PDPPSPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAGTGG 69
P PPSP +P +PR LPQ P G P APP PG G G
Sbjct: 241 PGPPSP--TPPAPR-----LPQDPCG-------------PDCAPPAPGLPRGPCGPDC-- 278
Query: 70 GVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHPSIPC--NRQPP 126
A AP L + D G CA P P P PC N PP
Sbjct: 279 ---APAAPSLPQ-----------------DPCGPD----CAPPAPGLPPDPCGSNCAPP 313
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 36.2 bits (82), Expect = 0.024
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 8 PLPDPP-SPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAG 66
PLP P SP +P +P R G P +G + PR +A G + L G
Sbjct: 247 PLPGPAHSP--APPAPELREGRAPGSTAG-------RRPRPREPQAAEESGCATVGLRRG 297
Query: 67 TGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHP 117
++ P S F +RR GGG G +G AT GPA P
Sbjct: 298 DCDRAGSSQPPATSGNGERCRFCRRRRRRGGG----GEGEGTHATHGPASP 344
>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 36.2 bits (82), Expect = 0.024
Identities = 41/153 (26%), Positives = 49/153 (32%), Gaps = 34/153 (22%)
Query: 5 PLSPLPDPPSPFRSPRSPRTRSGCLPQVPSGVGRE----CAQQHPRLEPQRAPPVPGASP 60
P P +SP SPR G P G G +P PP PG P
Sbjct: 44 PFQEEPQDTENAQSPGSPRQARG-----PGGGGNPGDTVLTPLSAPADPNTHPPAPGTQP 98
Query: 61 GSLGAGTGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHP--S 118
P L+R +T G R+G G PG A P S
Sbjct: 99 A--------------LPPLARPCRVSTLC--------GSRLGRRRAGEGPRPGRALPFLS 136
Query: 119 IPCNRQPPPLLTTTRYAYPVTRNPGCNQEKLPS 151
+PC P P LT T P CN+ + S
Sbjct: 137 LPCQAVPAPTLTPTP-PDPPRAGRKCNERRAVS 168
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 36.2 bits (82), Expect = 0.024
Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 8 PLPDPP-SPFRSPRSPRTRSGCLPQVPSGVGRECAQQHPRLEPQRAPPVPGASPGSLGAG 66
PLP P SP +P +P R G P +G + PR +A G + L G
Sbjct: 247 PLPGPAHSP--APPAPELREGRAPGSTAG-------RRPRPREPQAAEESGCATVGLRRG 297
Query: 67 TGGGVSAATAPYLSRALPAATFLSSQRRWGGGDRIGGSDQGACATPGPAHP 117
++ P S F +RR GGG G +G AT GPA P
Sbjct: 298 DCDRAGSSQPPATSGNGERCRFCRRRRRRGGG----GEGEGTHATHGPASP 344
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,594,965
Number of Sequences: 37866
Number of extensions: 852731
Number of successful extensions: 6651
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 582
Number of HSP's that attempted gapping in prelim test: 5598
Number of HSP's gapped (non-prelim): 1507
length of query: 231
length of database: 18,247,518
effective HSP length: 99
effective length of query: 132
effective length of database: 14,498,784
effective search space: 1913839488
effective search space used: 1913839488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.