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Search of human proteins with 239751859
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751859 PREDICTED: similar to LMARRLC1A [Homo sapiens]
(279 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751859 PREDICTED: similar to LMARRLC1A [Homo sapiens] 603 e-173
gi|239757352 PREDICTED: similar to LMARRLC1A [Homo sapiens] 601 e-172
gi|239746350 PREDICTED: hypothetical protein XP_002343735 [Homo ... 601 e-172
gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo ... 59 6e-09
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ... 58 8e-09
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ... 58 8e-09
gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo ... 42 6e-04
gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens] 41 0.001
gi|239757829 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239752340 PREDICTED: hypothetical protein XP_002348205 [Homo ... 40 0.002
gi|239746853 PREDICTED: hypothetical protein XP_002343864 [Homo ... 40 0.002
gi|169213065 PREDICTED: similar to hCG1654128 [Homo sapiens] 39 0.005
gi|169213233 PREDICTED: similar to hCG1654128 [Homo sapiens] 39 0.005
gi|239746652 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Ho... 36 0.033
gi|153792110 HEG homolog 1 [Homo sapiens] 33 0.36
gi|57864582 hornerin [Homo sapiens] 32 0.47
gi|54607118 leucine-rich repeats and immunoglobulin-like domains... 32 0.62
gi|38787935 BMP-2 inducible kinase isoform a [Homo sapiens] 32 0.80
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa... 32 0.80
gi|17978469 cyclin T2 isoform b [Homo sapiens] 31 1.4
gi|4502629 cyclin T2 isoform a [Homo sapiens] 31 1.4
gi|157364974 sucrase-isomaltase [Homo sapiens] 30 1.8
gi|68348711 tumor necrosis factor receptor superfamily, member 8... 30 3.1
gi|93587342 voltage-gated sodium channel type 4 alpha [Homo sapi... 30 3.1
gi|7662292 SPTF-associated factor 65 gamma [Homo sapiens] 30 3.1
gi|110735433 CD177 molecule [Homo sapiens] 30 3.1
gi|4504487 histidine rich calcium binding protein precursor [Hom... 30 3.1
gi|40786420 immunoglobulin-like domain containing receptor 2 [Ho... 29 4.0
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 29 4.0
>gi|239751859 PREDICTED: similar to LMARRLC1A [Homo sapiens]
Length = 279
Score = 603 bits (1556), Expect = e-173
Identities = 279/279 (100%), Positives = 279/279 (100%)
Query: 1 MELVTKGVPGFTSILRNYKRGTEAKGLVKPSFIEAFCMQGKGKDDTMPSRSSGPITDSND 60
MELVTKGVPGFTSILRNYKRGTEAKGLVKPSFIEAFCMQGKGKDDTMPSRSSGPITDSND
Sbjct: 1 MELVTKGVPGFTSILRNYKRGTEAKGLVKPSFIEAFCMQGKGKDDTMPSRSSGPITDSND 60
Query: 61 GHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCE 120
GHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCE
Sbjct: 61 GHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCE 120
Query: 121 EQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQE 180
EQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQE
Sbjct: 121 EQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQE 180
Query: 181 PAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKG 240
PAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKG
Sbjct: 181 PAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKG 240
Query: 241 DCKYQISDDIQEEIASRYSRCPSRGVRGERGICLHLVCS 279
DCKYQISDDIQEEIASRYSRCPSRGVRGERGICLHLVCS
Sbjct: 241 DCKYQISDDIQEEIASRYSRCPSRGVRGERGICLHLVCS 279
>gi|239757352 PREDICTED: similar to LMARRLC1A [Homo sapiens]
Length = 279
Score = 601 bits (1550), Expect = e-172
Identities = 277/279 (99%), Positives = 279/279 (100%)
Query: 1 MELVTKGVPGFTSILRNYKRGTEAKGLVKPSFIEAFCMQGKGKDDTMPSRSSGPITDSND 60
MELVTKGVPGFTSILRNYKRGTEAKGLVKPSFIEAFCMQGKGKDDTMPSRSSGPITDSND
Sbjct: 1 MELVTKGVPGFTSILRNYKRGTEAKGLVKPSFIEAFCMQGKGKDDTMPSRSSGPITDSND 60
Query: 61 GHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCE 120
GHGCAEANDEPDDASHRQHGNGH+YPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCE
Sbjct: 61 GHGCAEANDEPDDASHRQHGNGHLYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCE 120
Query: 121 EQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQE 180
EQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGK+EFAQE
Sbjct: 121 EQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKEEFAQE 180
Query: 181 PAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKG 240
PAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKG
Sbjct: 181 PAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKG 240
Query: 241 DCKYQISDDIQEEIASRYSRCPSRGVRGERGICLHLVCS 279
DCKYQISDDIQEEIASRYSRCPSRGVRGERGICLHLVCS
Sbjct: 241 DCKYQISDDIQEEIASRYSRCPSRGVRGERGICLHLVCS 279
>gi|239746350 PREDICTED: hypothetical protein XP_002343735 [Homo
sapiens]
Length = 279
Score = 601 bits (1549), Expect = e-172
Identities = 278/279 (99%), Positives = 278/279 (99%)
Query: 1 MELVTKGVPGFTSILRNYKRGTEAKGLVKPSFIEAFCMQGKGKDDTMPSRSSGPITDSND 60
MELVTKGVPGFTSILRNYKRGTEAKGLVKPSFIEAFCMQGKGKDDTMPSRSSGPITDSND
Sbjct: 1 MELVTKGVPGFTSILRNYKRGTEAKGLVKPSFIEAFCMQGKGKDDTMPSRSSGPITDSND 60
Query: 61 GHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCE 120
GHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCE
Sbjct: 61 GHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCE 120
Query: 121 EQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQE 180
EQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQE
Sbjct: 121 EQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQE 180
Query: 181 PAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKG 240
PAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKG
Sbjct: 181 PAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKG 240
Query: 241 DCKYQISDDIQEEIASRYSRCPSRGVRGERGICLHLVCS 279
DCKYQISDDIQEEIASRYSRCPSR VRGERGICLHLVCS
Sbjct: 241 DCKYQISDDIQEEIASRYSRCPSRDVRGERGICLHLVCS 279
>gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo
sapiens]
Length = 221
Score = 58.5 bits (140), Expect = 6e-09
Identities = 36/117 (30%), Positives = 54/117 (46%)
Query: 134 GQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPD 193
GQA + VL PD + AV ++ G ++D V+ G + A PA+ P+
Sbjct: 11 GQASPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGR 70
Query: 194 HEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKGDCKYQISDDI 250
++ Q EV + QV+ DG D E HPDH+ +AQ + DCK D+
Sbjct: 71 EQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDV 127
>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
sapiens]
Length = 582
Score = 58.2 bits (139), Expect = 8e-09
Identities = 36/117 (30%), Positives = 54/117 (46%)
Query: 134 GQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPD 193
GQA + VL PD + AV ++ G ++D V+ G + A PA+ P+
Sbjct: 372 GQAGPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGR 431
Query: 194 HEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKGDCKYQISDDI 250
++ Q EV + QV+ DG D E HPDH+ +AQ + DCK D+
Sbjct: 432 EQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDV 488
Score = 42.0 bits (97), Expect = 6e-04
Identities = 52/197 (26%), Positives = 75/197 (38%), Gaps = 26/197 (13%)
Query: 53 GPITDSNDGHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSH 112
G + + G EA +PD SHR G G + + PG +V
Sbjct: 87 GTVAAGHGHQGPQEAKKKPD-GSHRILGAGGAAVVHHTLQPGWEVLLVQPA--------- 136
Query: 113 TNDNWQCEEQSHHPG-PNDHLLGQAHGAVVLG--PDWMQDANTAVQSNEGDQEDTSEQVD 169
+ E+Q PG P HL H A L P ++ A E QE +
Sbjct: 137 VDGGGHGEQQGQCPGCPTGHL----HPARPLNRRPPGRPESQEAEVGTESCQE---QDAG 189
Query: 170 VHYGKDEFAQEPAE----RPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESS 225
+H +D+ Q P RP++S G ++ Q ++ HGQV+ G S
Sbjct: 190 IHGQQDDGGQRPTAHCTIRPVASTGNGHCQDGQRQTAQQIRHGQVEQPGGTHPPAGHLPS 249
Query: 226 HPDHKPVAQDP--EDKG 240
HP H +A+ P ED G
Sbjct: 250 HPGHHGIARHPHQEDGG 266
>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
sapiens]
Length = 589
Score = 58.2 bits (139), Expect = 8e-09
Identities = 36/117 (30%), Positives = 54/117 (46%)
Query: 134 GQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPD 193
GQA + VL PD + AV ++ G ++D V+ G + A PA+ P+
Sbjct: 379 GQAGPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGR 438
Query: 194 HEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQDPEDKGDCKYQISDDI 250
++ Q EV + QV+ DG D E HPDH+ +AQ + DCK D+
Sbjct: 439 EQDGQRQAGEEVGYRQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKDDQGQDV 495
Score = 42.0 bits (97), Expect = 6e-04
Identities = 52/197 (26%), Positives = 75/197 (38%), Gaps = 26/197 (13%)
Query: 53 GPITDSNDGHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSH 112
G + + G EA +PD SHR G G + + PG +V
Sbjct: 94 GTVAAGHGHQGPQEAKKKPD-GSHRILGAGGAAVVHHTLQPGWEVLLVQPA--------- 143
Query: 113 TNDNWQCEEQSHHPG-PNDHLLGQAHGAVVLG--PDWMQDANTAVQSNEGDQEDTSEQVD 169
+ E+Q PG P HL H A L P ++ A E QE +
Sbjct: 144 VDGGGHGEQQGQCPGCPTGHL----HPARPLNRRPPGRPESQEAEVGTESCQE---QDAG 196
Query: 170 VHYGKDEFAQEPAE----RPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESS 225
+H +D+ Q P RP++S G ++ Q ++ HGQV+ G S
Sbjct: 197 IHGQQDDGGQRPTAHCTIRPVASTGNGHCQDGQRQTAQQIRHGQVEQPGGTHPPAGHLPS 256
Query: 226 HPDHKPVAQDP--EDKG 240
HP H +A+ P ED G
Sbjct: 257 HPGHHGIARHPHQEDGG 273
>gi|239746324 PREDICTED: hypothetical protein XP_002343730 [Homo
sapiens]
Length = 329
Score = 42.0 bits (97), Expect = 6e-04
Identities = 52/197 (26%), Positives = 75/197 (38%), Gaps = 26/197 (13%)
Query: 53 GPITDSNDGHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSH 112
G + + G EA +PD SHR G G + + PG +V
Sbjct: 94 GTVAAGHGHQGPQEAKKKPD-GSHRILGAGGAAVVHHTLQPGWEVLLVQPA--------- 143
Query: 113 TNDNWQCEEQSHHPG-PNDHLLGQAHGAVVLG--PDWMQDANTAVQSNEGDQEDTSEQVD 169
+ E+Q PG P HL H A L P ++ A E QE +
Sbjct: 144 VDGGGHGEQQGQCPGCPTGHL----HPARPLNRRPPGRPESQEAEVGTESCQE---QDAG 196
Query: 170 VHYGKDEFAQEPAE----RPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESS 225
+H +D+ Q P RP++S G ++ Q ++ HGQV+ G S
Sbjct: 197 IHGQQDDGGQRPTAHCTIRPVASTGNGHCQDGQRQTAQQIRHGQVEQPGGTHPPAGHLPS 256
Query: 226 HPDHKPVAQDP--EDKG 240
HP H +A+ P ED G
Sbjct: 257 HPGHHGIARHPHQEDGG 273
>gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens]
Length = 1015
Score = 41.2 bits (95), Expect = 0.001
Identities = 56/241 (23%), Positives = 79/241 (32%), Gaps = 38/241 (15%)
Query: 34 EAFCMQGKGKDDTMPSRSSGPITDSNDGHGCAEANDEPDDASHRQHGNGHIYPLFRVVGP 93
E M + + GP S H + D P+DAS +HG
Sbjct: 216 EKHAMDASPTEHGVGQEEDGPEDASPTEHDVGQEEDGPEDASPTEHG------------- 262
Query: 94 GRKVKSAGYCPRFTRYCSHTNDNWQCEEQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTA 153
V P H D Q E+ P +H + Q GP+
Sbjct: 263 ---VDQQEDGPEDASPTEHGVD--QQEDGPEDARPTEHGVDQEED----GPEDASLTEHG 313
Query: 154 VQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEW-QSGGETEVSHGQVQV 212
V E ED S +G D+ P + + HG+ E+ + TE HG Q
Sbjct: 314 VDQQEDGPEDAS---PTEHGIDQEEDGPEDASPTEHGVDQEEDGPEDASPTEHEHGVDQE 370
Query: 213 TDGGDCVCHPESSHPDHKPVAQD--PEDKGDCKYQISDDIQEEIASRYSRCPSRGVRGER 270
DG PE + P V Q+ PED ++ + +E +R GV E
Sbjct: 371 EDG------PEDASPTEHGVDQEDGPEDARPTEH----GVDQEDGPEDARPTEHGVDQED 420
Query: 271 G 271
G
Sbjct: 421 G 421
Score = 38.9 bits (89), Expect = 0.005
Identities = 53/206 (25%), Positives = 70/206 (33%), Gaps = 25/206 (12%)
Query: 42 GKDDTMPSR------SSGPITDSNDGHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGR 95
G +D P+ GP S HG + D P+DAS +HG P
Sbjct: 235 GPEDASPTEHDVGQEEDGPEDASPTEHGVDQQEDGPEDASPTEHGVDQQEDGPEDARPTE 294
Query: 96 K-VKSAGYCPRFTRYCSHTNDNWQCEEQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAV 154
V P H D Q E+ P +H + Q GP+ V
Sbjct: 295 HGVDQEEDGPEDASLTEHGVD--QQEDGPEDASPTEHGIDQEED----GPEDASPTEHGV 348
Query: 155 QSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTD 214
E ED S H G D+ P + + HG+ + + TE HG V D
Sbjct: 349 DQEEDGPEDASPTEHEH-GVDQEEDGPEDASPTEHGVDQEDGPEDARPTE--HG-VDQED 404
Query: 215 GGDCVCHPESSHPDHKPVAQD--PED 238
G PE + P V Q+ PED
Sbjct: 405 G------PEDARPTEHGVDQEDGPED 424
Score = 29.3 bits (64), Expect = 4.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 39 QGKGKDDTMPS-----RSSGPITDSNDGHGCAEANDEPDDASHRQHGNGH 83
Q G +D P+ + GP HG + D P+DAS +HG GH
Sbjct: 386 QEDGPEDARPTEHGVDQEDGPEDARPTEHG-VDQEDGPEDASRTEHGVGH 434
>gi|239757829 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 40.0 bits (92), Expect = 0.002
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 25/162 (15%)
Query: 39 QGKGKDDT--MPSRSSGPITDSNDGHG----CAEANDEPDD--ASHR-QHGNGHIYPLFR 89
+GKG D P P+ N HG A +D+ ASH+ QH L+
Sbjct: 32 EGKGHHDHHHQPHGPQAPLAPGNQQHGQDVGIAVGHDQQGQQKASHQLQHPQSRAAHLWE 91
Query: 90 VVGPGRKVKSAGYCPRFTRYCSHTNDNWQCEEQSHHPGPNDHLLGQAHG-----AVVLGP 144
VV V++ R ++ W+ E+Q+ P D G+ H AV LG
Sbjct: 92 VVLAVGGVEALVVVGR------QEDEVWEGEKQAEPP---DSQAGEGHAGRGPPAVELGG 142
Query: 145 DWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPM 186
M AV+++ G QE + +VDV G FA+ A+ P+
Sbjct: 143 --MNYVQVAVKADAGQQEGSCVEVDVEEGTCHFAEARAKDPL 182
>gi|239752340 PREDICTED: hypothetical protein XP_002348205 [Homo
sapiens]
Length = 218
Score = 40.0 bits (92), Expect = 0.002
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 25/162 (15%)
Query: 39 QGKGKDDT--MPSRSSGPITDSNDGHG----CAEANDEPDD--ASHR-QHGNGHIYPLFR 89
+GKG D P P+ N HG A +D+ ASH+ QH L+
Sbjct: 48 EGKGHHDHHHQPHGPQAPLAPGNQQHGQDVGIAVGHDQQGQQKASHQLQHPQSRAAHLWE 107
Query: 90 VVGPGRKVKSAGYCPRFTRYCSHTNDNWQCEEQSHHPGPNDHLLGQAHG-----AVVLGP 144
VV V++ R ++ W+ E+Q+ P D G+ H AV LG
Sbjct: 108 VVLAVGGVEALVVVGR------QEDEVWEGEKQAEPP---DSQAGEGHAGRGPPAVELGG 158
Query: 145 DWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPM 186
M AV+++ G QE + +VDV G FA+ A+ P+
Sbjct: 159 --MNYVQVAVKADAGQQEGSCVEVDVEEGTCHFAEARAKDPL 198
>gi|239746853 PREDICTED: hypothetical protein XP_002343864 [Homo
sapiens]
Length = 218
Score = 40.0 bits (92), Expect = 0.002
Identities = 46/162 (28%), Positives = 68/162 (41%), Gaps = 25/162 (15%)
Query: 39 QGKGKDDT--MPSRSSGPITDSNDGHG----CAEANDEPDD--ASHR-QHGNGHIYPLFR 89
+GKG D P P+ N HG A +D+ ASH+ QH L+
Sbjct: 48 EGKGHHDHHHQPHGPQAPLAPGNQQHGQDVGIAVGHDQQGQQKASHQLQHPQSRAAHLWE 107
Query: 90 VVGPGRKVKSAGYCPRFTRYCSHTNDNWQCEEQSHHPGPNDHLLGQAHG-----AVVLGP 144
VV V++ R ++ W+ E+Q+ P D G+ H AV LG
Sbjct: 108 VVLAVGGVEALVVVGR------QEDEVWEGEKQAEPP---DSQAGEGHAGRGPPAVELGG 158
Query: 145 DWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPM 186
M AV+++ G QE + +VDV G FA+ A+ P+
Sbjct: 159 --MNYVQVAVKADAGQQEGSCVEVDVEEGTCHFAEARAKDPL 198
>gi|169213065 PREDICTED: similar to hCG1654128 [Homo sapiens]
Length = 851
Score = 38.9 bits (89), Expect = 0.005
Identities = 49/214 (22%), Positives = 73/214 (34%), Gaps = 40/214 (18%)
Query: 62 HGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCEE 121
H + D P+DAS +HG + GP S T E+
Sbjct: 64 HDVGQEEDGPEDASPTEHGVDQ-----QEDGP--------------EDASPTEHGVNQED 104
Query: 122 QSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEP 181
P +H + Q GP+ + + E ED S +G D+ P
Sbjct: 105 GPEDASPTEHGVDQQED----GPEDARPTEHGIDQEEDGPEDASL---TEHGVDQQEDGP 157
Query: 182 AERPMSSHGLPDHEEW-QSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQD---PE 237
+ + HG+ E+ + TE HG Q DG PE + P V Q+ PE
Sbjct: 158 EDASPTEHGIDQEEDGPEDASPTEHEHGVDQEEDG------PEDASPTEHGVDQEEDGPE 211
Query: 238 DKGDCKYQISDDIQEEIASRYSRCPSRGVRGERG 271
D ++ + +E +R GV E G
Sbjct: 212 DASPTEH----GVDQEDGPEDARPTEHGVDQEDG 241
Score = 37.0 bits (84), Expect = 0.019
Identities = 49/209 (23%), Positives = 73/209 (34%), Gaps = 43/209 (20%)
Query: 39 QGKGKDDTMPS-----RSSGPITDSNDGHGCAEANDEPDDASHRQHGNGHIYPLFRVVGP 93
Q G +D P+ + GP S HG + D P+DA +HG
Sbjct: 86 QEDGPEDASPTEHGVNQEDGPEDASPTEHGVDQQEDGPEDARPTEHG------------- 132
Query: 94 GRKVKSAGYCPRFTRYCSHTNDNWQCEEQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTA 153
+ P H D Q E+ P +H + Q D +DA+
Sbjct: 133 ---IDQEEDGPEDASLTEHGVD--QQEDGPEDASPTEHGIDQEE-------DGPEDASPT 180
Query: 154 VQSNEGDQED--TSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEWQSGGETEVSHGQVQ 211
+ DQE+ + +G D+ P + + HG+ + + TE HG V
Sbjct: 181 EHEHGVDQEEDGPEDASPTEHGVDQEEDGPEDASPTEHGVDQEDGPEDARPTE--HG-VD 237
Query: 212 VTDGGDCVCHPESSHPDHKPVAQD--PED 238
DG PE + P V Q+ PED
Sbjct: 238 QEDG------PEDARPTEHGVDQEDGPED 260
Score = 29.3 bits (64), Expect = 4.0
Identities = 39/178 (21%), Positives = 56/178 (31%), Gaps = 37/178 (20%)
Query: 39 QGKGKDDTMPSR------SSGPITDSNDGHGCAEANDEPDDASHRQHGNGHIYPLFRVVG 92
Q G +D P+ GP S HG + D P+DAS +HG
Sbjct: 119 QEDGPEDARPTEHGIDQEEDGPEDASLTEHGVDQQEDGPEDASPTEHG------------ 166
Query: 93 PGRKVKSAGYCPRFTRYCSHTNDNWQCEEQSHHPGPNDHLLGQAHGAVVLGPDWMQDANT 152
+ P H + Q E+ P +H + Q GP+
Sbjct: 167 ----IDQEEDGPEDASPTEHEHGVDQEEDGPEDASPTEHGVDQEED----GPEDASPTEH 218
Query: 153 AVQSNEG--DQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEWQSGGETEVSHG 208
V +G D T VD G P + + HG+ + + TE HG
Sbjct: 219 GVDQEDGPEDARPTEHGVDQEDG-------PEDARPTEHGVDQEDGPEDASRTE--HG 267
Score = 29.3 bits (64), Expect = 4.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 39 QGKGKDDTMPS-----RSSGPITDSNDGHGCAEANDEPDDASHRQHGNGH 83
Q G +D P+ + GP HG + D P+DAS +HG GH
Sbjct: 222 QEDGPEDARPTEHGVDQEDGPEDARPTEHG-VDQEDGPEDASRTEHGVGH 270
>gi|169213233 PREDICTED: similar to hCG1654128 [Homo sapiens]
Length = 1070
Score = 38.9 bits (89), Expect = 0.005
Identities = 50/207 (24%), Positives = 70/207 (33%), Gaps = 41/207 (19%)
Query: 39 QGKGKDDTMPS-----RSSGPITDSNDGHGCAEANDEPDDASHRQHGNGHIYPLFRVVGP 93
Q G +D P+ + GP S HG + D P+DA +HG
Sbjct: 307 QEDGPEDASPTEHGVNQEDGPEDASPTEHGVDQQEDGPEDARPTEHG------------- 353
Query: 94 GRKVKSAGYCPRFTRYCSHTNDNWQCEEQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTA 153
+ P H D Q E+ P +H + Q GP+
Sbjct: 354 ---IDQEEDGPEDASLTEHGVD--QQEDGPEDASPTEHGIDQEED----GPEDASPTEHG 404
Query: 154 VQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEWQSGGETEVSHGQVQVT 213
V E ED S +G D+ P + + HG+ + + TE HG V
Sbjct: 405 VDQEEDGPEDAS---PTEHGVDQEEDGPEDASPTEHGVDQEDGPEDARPTE--HG-VDQE 458
Query: 214 DGGDCVCHPESSHPDHKPVAQD--PED 238
DG PE + P V Q+ PED
Sbjct: 459 DG------PEDARPTEHGVDQEDGPED 479
Score = 36.6 bits (83), Expect = 0.025
Identities = 51/212 (24%), Positives = 72/212 (33%), Gaps = 22/212 (10%)
Query: 62 HGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCEE 121
H + D P+DAS +HG P + P H D Q E+
Sbjct: 285 HDVGQEEDGPEDASPTEHGVDQQEDGPEDASPTEHGVNQEDGPEDASPTEHGVD--QQED 342
Query: 122 QSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEP 181
P +H + Q GP+ V E ED S +G D+ P
Sbjct: 343 GPEDARPTEHGIDQEED----GPEDASLTEHGVDQQEDGPEDAS---PTEHGIDQEEDGP 395
Query: 182 AERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSHPDHKPVAQD--PEDK 239
+ + HG+ D EE + HG Q DG PE + P V Q+ PED
Sbjct: 396 EDASPTEHGV-DQEEDGPEDASPTEHGVDQEEDG------PEDASPTEHGVDQEDGPEDA 448
Query: 240 GDCKYQISDDIQEEIASRYSRCPSRGVRGERG 271
++ + +E +R GV E G
Sbjct: 449 RPTEH----GVDQEDGPEDARPTEHGVDQEDG 476
Score = 29.3 bits (64), Expect = 4.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 39 QGKGKDDTMPS-----RSSGPITDSNDGHGCAEANDEPDDASHRQHGNGH 83
Q G +D P+ + GP HG + D P+DAS +HG GH
Sbjct: 441 QEDGPEDARPTEHGVDQEDGPEDARPTEHG-VDQEDGPEDASRTEHGVGH 489
>gi|239746652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1513
Score = 38.9 bits (89), Expect = 0.005
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 148 QDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEWQSGGETEVSH 207
+DA V +NE + + + VH +E A + + +++HG+ + + Q E H
Sbjct: 234 EDAAQGV-ANEDAAQGVANEDAVHGVANEDAAQGVAKEVTAHGVTNEDAVQGVVNQEALH 292
Query: 208 GQVQVTDGGDCVCHPESSHP-DHKPVAQDPEDKGDCKYQISDDIQEEIA 255
G V D + P+S+H ++ VA + +G ++D I E+ A
Sbjct: 293 GVVANEDAAQAIAKPDSAHGIANEGVANEVAAQGIATEDVADGIAEDAA 341
>gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Homo
sapiens]
Length = 2378
Score = 36.2 bits (82), Expect = 0.033
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 148 QDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEWQSGGETEVSH 207
+DA V +NE + + + VH +E A + + +++HG+ + + Q E H
Sbjct: 811 EDAAQGV-ANEDAAQGVANEDAVHGVANEDAAQGVAKEVTAHGVTNEDAVQGVVNEEALH 869
Query: 208 GQVQVTDGGDCVCHPESSHP-DHKPVAQDPEDKGDCKYQISDDIQEEIA 255
G V D + P+++H ++ VA + +G ++D I ++ A
Sbjct: 870 GVVANEDAAQAIAKPDAAHGIANEGVANEVAAQGIATEDVADGIAKDAA 918
Score = 28.5 bits (62), Expect = 6.8
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 170 VHYGKDEFAQEPAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPESSH 226
VH +E A + + +++HG+ + + Q + HG V D + P+++H
Sbjct: 615 VHGVANEDAAQGIAKEVTAHGVANEDAVQGVVNEDALHGVVANEDAAQAIAKPDAAH 671
Score = 28.5 bits (62), Expect = 6.8
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 156 SNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDG 215
+NE + + +V VH E A + + +++HG+ + + Q + H V D
Sbjct: 1534 ANEVAAQGIANEVAVHGVAIEDAVQGVVKEVTAHGVANEDAVQGVVNEDALHSVVANEDA 1593
Query: 216 GDCVCHPESSH 226
+ P+++H
Sbjct: 1594 AQAIAKPDAAH 1604
>gi|153792110 HEG homolog 1 [Homo sapiens]
Length = 1381
Score = 32.7 bits (73), Expect = 0.36
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 128 PNDHLLGQAHGAVVLGPDWMQDA-NTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPM 186
P D + +V+L P ++ N+ V N GD+E + +G +
Sbjct: 360 PKDSRIATTSSSVLLSPSAVESRRNSRVTGNPGDEEFIEPSTENEFGLTSLRWQNDSPTF 419
Query: 187 SSHGLPDHEEWQSG---GETEVSHGQVQVTDGGDCVCH 221
H L E Q+G +TE V GG+ H
Sbjct: 420 GEHQLASSSEVQNGSPMSQTETVSRSVAPMRGGEITAH 457
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 32.3 bits (72), Expect = 0.47
Identities = 34/140 (24%), Positives = 51/140 (36%), Gaps = 22/140 (15%)
Query: 74 ASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCEEQSHHPGPNDHLL 133
+SH QHG+G Y R G +G F + H + + Q S H + H
Sbjct: 320 SSHGQHGSGSSYSYSR----GHYESGSGQTSGFGQ---HESGSGQSSGYSKHGSGSGHSS 372
Query: 134 GQAHGAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPA----ERPMSSH 189
Q Q +T+ Q++ Q +S + YG+ E A + + S
Sbjct: 373 SQG-----------QHGSTSGQASSSGQHGSSSRQSSSYGQHESASRHSSGRGQHSSGSG 421
Query: 190 GLPDHEEWQSGGETEVSHGQ 209
P H + SG S GQ
Sbjct: 422 QSPGHGQRGSGSGQSPSSGQ 441
Score = 28.9 bits (63), Expect = 5.2
Identities = 41/163 (25%), Positives = 61/163 (37%), Gaps = 31/163 (19%)
Query: 74 ASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCS---HTNDNWQ------CEEQSH 124
+S+ QHG+G + G GR+ +G+ P R+ S H++ + Q C
Sbjct: 750 SSYGQHGSGS----HQSSGHGRQGSGSGHSPSRVRHGSSSGHSSSHGQHGSGTSCSSSCG 805
Query: 125 H--------PGPNDHLLGQAHGAVVLGP------DWMQDANTAVQSNEGDQEDTSEQVDV 170
H G H G G G + +T+ QS+ Q D+S
Sbjct: 806 HYESGSGQASGFGQHESGSGQGYSQHGSASGHFSSQGRHGSTSGQSSSSGQHDSSSGQSS 865
Query: 171 HYGKDEFAQEPAE---RPMSSHG-LPDHEEWQSGGETEVSHGQ 209
YG+ E A A R S G P H + SG S+G+
Sbjct: 866 SYGQHESASHHASGRGRHGSGSGQSPGHGQRGSGSGQSPSYGR 908
>gi|54607118 leucine-rich repeats and immunoglobulin-like domains 1
[Homo sapiens]
Length = 1093
Score = 32.0 bits (71), Expect = 0.62
Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 25/160 (15%)
Query: 112 HTNDNWQC-EEQSHHPGPNDHLLGQAHGAVVLGPDWMQDANTAVQSNEGDQ--------- 161
H N C + SH P P+ H + + G + ++ A++ EG
Sbjct: 868 HIESNGVCPRDASHFPEPDTHSVACRQPKLCAGSAYHKEPWKAMEKAEGTPGPHKMEHGG 927
Query: 162 ----EDTSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGD 217
D + +VD + F +P R + P+ E + H Q T G
Sbjct: 928 RVVCSDCNTEVDCYSRGQAFHPQPVSRDSAQPSAPNGPEPGGSDQEHSPHHQCSRTAAGS 987
Query: 218 CVCHPESSHPDH----------KPVAQDPEDKGDCKYQIS 247
C S +P + KP+A + KGD + ++
Sbjct: 988 CPECQGSLYPSNHDRMLTAVKKKPMA-SLDGKGDSSWTLA 1026
>gi|38787935 BMP-2 inducible kinase isoform a [Homo sapiens]
Length = 1161
Score = 31.6 bits (70), Expect = 0.80
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 164 TSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEWQSGGETEVSHGQVQVTDGGDCVCHPE 223
TS Q V G DE + P S P E + + EV G+ D D PE
Sbjct: 727 TSVQGQVQKGNDESESDFESDPPS----PKSSEEEEQDDEEVLQGEQG--DFNDDDTEPE 780
Query: 224 SSHPDHKPVAQDPEDKGDCKYQISDDIQEEIASRYS 259
+ H+P+ D ED+ + + SD E+ ++YS
Sbjct: 781 NL--GHRPLLMDSEDEEEEEKHSSDSDYEQAKAKYS 814
>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
sapiens]
Length = 528
Score = 31.6 bits (70), Expect = 0.80
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 145 DWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLP-----DHEEWQS 199
+W NTAV + + D E+ + + G +E A++ A +P+ +P HEE +
Sbjct: 434 EWTDSPNTAVSVHVSESSDDDEEEEENIGCEEKAKKNANKPLLDEIVPVYRRDCHEEVYA 493
Query: 200 GGETEVSHG 208
G G
Sbjct: 494 GSHQYPGRG 502
>gi|17978469 cyclin T2 isoform b [Homo sapiens]
Length = 730
Score = 30.8 bits (68), Expect = 1.4
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 25/119 (21%)
Query: 116 NWQCEEQSHHPGPNDHLLGQAHGAVVLGPDWMQ-----DANTAVQSNEGDQEDTSE---- 166
NW+ + + P + GQ +LG +Q D+ T V +N Q+ ++
Sbjct: 256 NWRANQAARKPKVD----GQVSETPLLGSSLVQNSILVDSVTGVPTNPSFQKPSTSAFPA 311
Query: 167 ---------QVDVHYGKDEFAQEPAERPMSSHGLPDHEEW---QSGGETEVSHGQVQVT 213
V + D + P +S+GL H+EW Q TE + Q Q T
Sbjct: 312 PVPLNSGNISVQDSHTSDNLSMLATGMPSTSYGLSSHQEWPQHQDSARTEQLYSQKQET 370
>gi|4502629 cyclin T2 isoform a [Homo sapiens]
Length = 663
Score = 30.8 bits (68), Expect = 1.4
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 25/119 (21%)
Query: 116 NWQCEEQSHHPGPNDHLLGQAHGAVVLGPDWMQ-----DANTAVQSNEGDQEDTSE---- 166
NW+ + + P + GQ +LG +Q D+ T V +N Q+ ++
Sbjct: 256 NWRANQAARKPKVD----GQVSETPLLGSSLVQNSILVDSVTGVPTNPSFQKPSTSAFPA 311
Query: 167 ---------QVDVHYGKDEFAQEPAERPMSSHGLPDHEEW---QSGGETEVSHGQVQVT 213
V + D + P +S+GL H+EW Q TE + Q Q T
Sbjct: 312 PVPLNSGNISVQDSHTSDNLSMLATGMPSTSYGLSSHQEWPQHQDSARTEQLYSQKQET 370
>gi|157364974 sucrase-isomaltase [Homo sapiens]
Length = 1827
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 224 SSHPDHKPVAQDPEDKGDCKYQISDDIQEEIASRYSRCPSRGVRGERGIC 273
+S P V +P D G C ++D + I + P+ G+ +RG C
Sbjct: 45 TSTPATTRVTTNPSDSGKCPNVLNDPVNVRINCIPEQFPTEGICAQRGCC 94
>gi|68348711 tumor necrosis factor receptor superfamily, member 8
isoform 1 precursor [Homo sapiens]
Length = 595
Score = 29.6 bits (65), Expect = 3.1
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 224 SSHPDHKPVAQDPEDKGDCKYQISDDIQEEIASRYSRCPS 263
SS P P PE GDC+ Q D + A R + C S
Sbjct: 222 SSDPGLSPTQPCPEGSGDCRKQCEPDYYLDEAGRCTACVS 261
>gi|93587342 voltage-gated sodium channel type 4 alpha [Homo
sapiens]
Length = 1836
Score = 29.6 bits (65), Expect = 3.1
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 179 QEPAERPMSSHGLPDHEEWQSGGETEVSHGQVQ-VTDGGDCVCHPESSHPDHKPVAQDPE 237
Q P S +P EE + E E S Q + DG VC S D+KP +DPE
Sbjct: 923 QVPIASEESDLEMPTEEETDTFSEPEDSKKPPQPLYDGNSSVC----STADYKPPEEDPE 978
Query: 238 DKGD 241
++ +
Sbjct: 979 EQAE 982
>gi|7662292 SPTF-associated factor 65 gamma [Homo sapiens]
Length = 414
Score = 29.6 bits (65), Expect = 3.1
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 211 QVTDGGDCVCHPESSHPDHKPVAQDPEDKGDCKYQISDDIQEEIASRYSRCPSRGVRG 268
Q+++ + + +PE + D KPV E D + +S++++ ++AS P GV G
Sbjct: 252 QLSEEYERIVNPEKATEDAKPVKIKEEPVSDITFPVSEELEADLASGDQSLP-MGVLG 308
>gi|110735433 CD177 molecule [Homo sapiens]
Length = 437
Score = 29.6 bits (65), Expect = 3.1
Identities = 23/77 (29%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 37 CMQGKGKDDTMPSRSSGPITDSNDGHGCAEAND-EPDDASHRQHGNGHIYPLFRVVGPGR 95
C G G DT+ SGP GC EA D EP HR +GPG
Sbjct: 49 CDSGLGCQDTLMLIESGPQVSLVLSKGCTEAKDQEPRVTEHR-------------MGPGL 95
Query: 96 KVKSAGYCPRFTRYCSH 112
+ S + R +C++
Sbjct: 96 SLISYTFVCRQEDFCNN 112
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 29.6 bits (65), Expect = 3.1
Identities = 45/187 (24%), Positives = 63/187 (33%), Gaps = 18/187 (9%)
Query: 59 NDGHGCAEANDEPDDASHRQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQ 118
+ GHG E D D HR H + S Y + R+ H + +
Sbjct: 273 HQGHGIEEDEDVSDGHHHRD--PSHRHRSHEEDDNDDDDVSTEYGHQAHRHQDHRKEEVE 330
Query: 119 CEEQSHHPGPNDHLLGQAHGAVVLGPD-----WMQDANTAVQSNEGDQEDTSEQVDVHYG 173
HH DH Q H D W Q V D+E+ E++ V +G
Sbjct: 331 AVSGEHHHHVPDH-RHQGHRDEEEDEDVSTERWHQGPQ-HVHHGLVDEEEEEEEITVQFG 388
Query: 174 KDEFAQEPAERPMSSHGLPDHEEWQSGGETEV-SHGQVQVTDGGDCVCHPESSH--PDHK 230
+ +P D E++Q +TEV H +V D E H P H+
Sbjct: 389 HYVASHQPRGHK------SDEEDFQDEYKTEVPHHHHHRVPREEDEEVSAELGHQAPSHR 442
Query: 231 PVAQDPE 237
QD E
Sbjct: 443 QSHQDEE 449
>gi|40786420 immunoglobulin-like domain containing receptor 2 [Homo
sapiens]
Length = 639
Score = 29.3 bits (64), Expect = 4.0
Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 36/186 (19%)
Query: 23 EAKGLVKPSFIEAFCMQGKGKDDTMP------SRSSGPITDSNDGHGCAEANDEPDDASH 76
EA+G + E+ G +DD++ SRS P+TD++ G + A P + +H
Sbjct: 450 EARGGSRFERSESRAHSGFYQDDSLEEYYGQRSRSREPLTDADRGWAFSPARRRPAEDAH 509
Query: 77 RQHGNGHIYPLFRVVGPGRKVKSAGYCPRFTRYCSHTNDNWQCEEQSHHPGPN--DHLLG 134
L R+V ++ G P++ H+ E Q+ G + L
Sbjct: 510 ----------LPRLVS-----RTPGTAPKY----DHSYLGSARERQARPEGASRGGSLET 550
Query: 135 QAHGAVVLGP------DWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSS 188
+ + LGP W S++ DQED S+ Y + E + P+ R
Sbjct: 551 PSKRSAQLGPRSASYYAWSPPGTYKAGSSQDDQEDASDDALPPYSELELTRGPSYR---G 607
Query: 189 HGLPDH 194
LP H
Sbjct: 608 RDLPYH 613
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 29.3 bits (64), Expect = 4.0
Identities = 17/65 (26%), Positives = 25/65 (38%)
Query: 138 GAVVLGPDWMQDANTAVQSNEGDQEDTSEQVDVHYGKDEFAQEPAERPMSSHGLPDHEEW 197
GA + GP+ +S EG D+S H G E+ P P + +E
Sbjct: 509 GAGLGGPEQGGRLTPRARSEEGASSDSSASTGSHEGSSEWGGRPQGCPGKARAETSQQEA 568
Query: 198 QSGGE 202
GG+
Sbjct: 569 SEGGD 573
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,559,993
Number of Sequences: 37866
Number of extensions: 702343
Number of successful extensions: 1440
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1383
Number of HSP's gapped (non-prelim): 81
length of query: 279
length of database: 18,247,518
effective HSP length: 101
effective length of query: 178
effective length of database: 14,423,052
effective search space: 2567303256
effective search space used: 2567303256
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.