Guide to the Human Genome
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Search of human proteins with 239751837

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751837 PREDICTED: hypothetical protein [Homo sapiens]
         (303 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751837 PREDICTED: hypothetical protein [Homo sapiens]           624   e-179
gi|239746328 PREDICTED: hypothetical protein XP_002343731 [Homo ...   624   e-179
gi|239757333 PREDICTED: hypothetical protein [Homo sapiens]           620   e-178
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     35   0.063
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ...    35   0.11 
gi|239752536 PREDICTED: hypothetical protein XP_002346688 [Homo ...    35   0.11 
gi|4507161 SRY-box 11 [Homo sapiens]                                   34   0.14 
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]         34   0.14 
gi|18466802 Ras and Rab interactor 2 [Homo sapiens]                    34   0.18 
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      33   0.24 
gi|54873613 agrin [Homo sapiens]                                       33   0.31 
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]            33   0.41 
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom...    33   0.41 
gi|148727370 immediate early response 5-like [Homo sapiens]            33   0.41 
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    32   0.53 
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    32   0.53 
gi|83367077 mucin 16 [Homo sapiens]                                    32   0.91 
gi|239757949 PREDICTED: similar to CTL-recognized antigen on mel...    32   0.91 
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]            32   0.91 
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            32   0.91 
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            32   0.91 
gi|55770876 notch4 preproprotein [Homo sapiens]                        32   0.91 
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      31   1.2  
gi|239754668 PREDICTED: mucin 12 [Homo sapiens]                        31   1.2  
gi|89026265 PREDICTED: mucin 12 [Homo sapiens]                         31   1.2  
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        31   1.2  
gi|110681708 zinc finger protein 579 [Homo sapiens]                    31   1.2  
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]             31   1.5  
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]            31   1.5  
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ...    31   1.5  

>gi|239751837 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score =  624 bits (1608), Expect = e-179
 Identities = 303/303 (100%), Positives = 303/303 (100%)

Query: 1   MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60
           MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD
Sbjct: 1   MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60

Query: 61  TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
           TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV
Sbjct: 61  TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120

Query: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180
           KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL
Sbjct: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180

Query: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240
           AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW
Sbjct: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240

Query: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300
           PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA
Sbjct: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300

Query: 301 TLF 303
           TLF
Sbjct: 301 TLF 303


>gi|239746328 PREDICTED: hypothetical protein XP_002343731 [Homo
           sapiens]
          Length = 303

 Score =  624 bits (1608), Expect = e-179
 Identities = 303/303 (100%), Positives = 303/303 (100%)

Query: 1   MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60
           MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD
Sbjct: 1   MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60

Query: 61  TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
           TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV
Sbjct: 61  TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120

Query: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180
           KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL
Sbjct: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180

Query: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240
           AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW
Sbjct: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240

Query: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300
           PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA
Sbjct: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300

Query: 301 TLF 303
           TLF
Sbjct: 301 TLF 303


>gi|239757333 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score =  620 bits (1600), Expect = e-178
 Identities = 302/303 (99%), Positives = 302/303 (99%)

Query: 1   MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60
           MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD
Sbjct: 1   MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60

Query: 61  TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
           TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV
Sbjct: 61  TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120

Query: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180
           KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTT TSTFWVHPQLLGQFQEGRQLL
Sbjct: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTWTSTFWVHPQLLGQFQEGRQLL 180

Query: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240
           AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW
Sbjct: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240

Query: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300
           PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA
Sbjct: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300

Query: 301 TLF 303
           TLF
Sbjct: 301 TLF 303


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 35.4 bits (80), Expect = 0.063
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 28  PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87
           PG AG T       A+GP+G  G  G+         G R    P    GF G AG +GQ 
Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSP--------GERGEVGPAGPNGFAGPAGAAGQP 735

Query: 88  AAYSVRNSR 96
            A   R ++
Sbjct: 736 GAKGERGAK 744



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 26  AGP-GVAGETRQAARRWASGPSGGGGDAGAT----------ERRRDTRCGLRPRCRPPMT 74
           AGP G AG+      R A GP G  G  G T                  G R    PP  
Sbjct: 726 AGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGM 785

Query: 75  EGFWGGAGGSG 85
            GF G AG +G
Sbjct: 786 TGFPGAAGRTG 796


>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
           dystrophy [Homo sapiens]
          Length = 468

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 36/205 (17%)

Query: 113 CRRASLHVKLGDPEMTL-SPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQL-L 170
           C   S+  + G P M L +PS  T+ +       RR+ +W    R    + F  +P L +
Sbjct: 81  CPCPSVKFQPGLPAMALPTPSDGTHTAEAQGSGRRRRIVWTPSQREALRACFERNPYLGI 140

Query: 171 GQFQEGRQLLAVQE-------QVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMG-RGA 222
              ++  Q + + E       Q +R    R   H+ + + W       HG   G G R A
Sbjct: 141 TTREQLAQAIGILEPRVPIWFQNERSSQLRQ--HRRKSRPWPGR----HGPPEGRGKRTA 194

Query: 223 VWNASAPLLNRASSASRWPSEYRKPGLAPGTLGPES-------------------TPSSA 263
           V  +   L  RA    R+P    K  LA  T+ PES                    P+ A
Sbjct: 195 VTGSQTALFLRAFEKDRFPGIAAKEELARETVLPESRIQIWFQNRRARHPGQAGRAPTKA 254

Query: 264 AS-WEAAIGVTRADPTWPSEASGGA 287
            S   AA G    DP+W + A  GA
Sbjct: 255 GSLCNAATGECHPDPSWVAFAHIGA 279


>gi|239752536 PREDICTED: hypothetical protein XP_002346688 [Homo
           sapiens]
          Length = 236

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 36/205 (17%)

Query: 113 CRRASLHVKLGDPEMTL-SPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQL-L 170
           C   S+  + G P M L +PS  T+ +       RR+ +W    R    + F  +P L +
Sbjct: 25  CPCPSVKFQPGLPAMALPTPSDGTHTAEAQGWGRRRRIVWTPSQREALRACFERNPYLGI 84

Query: 171 GQFQEGRQLLAVQE-------QVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMG-RGA 222
              ++  Q + + E       Q +R    R   H+ + + W       HG   G G R A
Sbjct: 85  TTREQLAQAIGILEPRVPIWFQNERSSQLRQ--HRRKSRPWPGR----HGPPEGRGKRTA 138

Query: 223 VWNASAPLLNRASSASRWPSEYRKPGLAPGTLGPES-------------------TPSSA 263
           V  +   L  RA    R+P    K  LA  T+ PES                    P+ A
Sbjct: 139 VTGSQTALFLRAFEKDRFPGIAAKEELARETVLPESRIQIWFQNRRARHPGQAGRAPTKA 198

Query: 264 AS-WEAAIGVTRADPTWPSEASGGA 287
            S   AA G    DP+W + A  GA
Sbjct: 199 GSLCNAATGECHPDPSWVAFAHIGA 223


>gi|4507161 SRY-box 11 [Homo sapiens]
          Length = 441

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 21  RMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGG 80
           +M  SA P  +    ++A     G +GGG     T +    +CG   + + P   G   G
Sbjct: 125 KMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCG---KLKAPAAAGAKAG 181

Query: 81  AGGSGQEAAY 90
           AG + Q   Y
Sbjct: 182 AGKAAQSGDY 191


>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
          Length = 953

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 59  RDTRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASL 118
           R+ R   RP   PP      G   GSG  ++YS  +SR ++ ++S VS V+      +S 
Sbjct: 666 REARRKERPARTPPRRRTLSGSGSGSG--SSYSGSSSRSRSLSVSSVSSVSSATSSSSSA 723

Query: 119 H-VKLGDPEMTL-SPSSSTNFSRTVPLTCRRQR 149
           H V   D    L SP SS +     P   R+++
Sbjct: 724 HSVDSEDMYADLASPVSSASSRSPAPAQTRKEK 756


>gi|18466802 Ras and Rab interactor 2 [Homo sapiens]
          Length = 895

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 61  TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120
           T  G RP   P +  G  G  GG+  EAA          +   P S  +RP C       
Sbjct: 376 TLSGGRPGAGPELELGTAGSPGGAPPEAAPG------DCTRAPPPSSESRPPCHGG--RQ 427

Query: 121 KLGDPEMTLSPSSSTNFSRTVPL 143
           +L D  ++ S S S  F R++PL
Sbjct: 428 RLSDMSISTSSSDSLEFDRSMPL 450


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 9    GPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPR 68
            GP+G   +      S  AGP  AG    A  R A GP G  GD G T  R     G++  
Sbjct: 1053 GPVGPAGKSGDRGESGPAGP--AGAPGPAGSRGAPGPQGPRGDKGETGER--GAAGIKGH 1108

Query: 69   CRPPMTEGFWGGAGGSGQEAA 89
               P   G  G  G +GQ+ A
Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGA 1129



 Score = 32.3 bits (72), Expect = 0.53
 Identities = 25/65 (38%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 29  GVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGGS 84
           G  GE        A G  GG GDAGA   R         GLR    PP  EG  G AG  
Sbjct: 654 GKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPP 713

Query: 85  GQEAA 89
           G   A
Sbjct: 714 GPPGA 718



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 28  PGVAGETRQAARRWASGPSGGGGDAG-ATERRRDTRCGLRPRCRPPMTEGFWGGAGGSG 85
           PG AGE      R  +GP+G  G+ G A ER      G R     P  +G  GG G  G
Sbjct: 479 PGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRG 537



 Score = 29.6 bits (65), Expect = 3.4
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 7    AGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLR 66
            A GPLG+          ++   G+AG       R + GP G  G++G     +    GL 
Sbjct: 943  APGPLGIAG--------ITGARGLAGPPGMPGPRGSPGPQGVKGESG-----KPGANGLS 989

Query: 67   PRCRPPMTEGFWGGAGGSGQ 86
                PP  +G  G AG +G+
Sbjct: 990  GERGPPGPQGLPGLAGTAGE 1009



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 28  PGVAGETRQAARRWASGPSGGGGDAGATERRRDT-------RCGLRPRCRPPMTEGFWGG 80
           PG+AG       R  +GP G  G  GA  +  +          G +    PP   G  GG
Sbjct: 788 PGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGG 847

Query: 81  AGGSGQEAAYSVRNSR 96
           +G +G      V+  R
Sbjct: 848 SGPAGPPGPQGVKGER 863


>gi|54873613 agrin [Homo sapiens]
          Length = 2045

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 47/189 (24%), Positives = 60/189 (31%), Gaps = 34/189 (17%)

Query: 13   VRARCTLLRMSLSAGPGVAG-ETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC-- 69
            VR  C  +    S  PGVAG +  Q     A GP+G   DA A     + RC    RC  
Sbjct: 855  VRDDCEQMTGLCSCKPGVAGPKCGQCPDGRALGPAGCEADASAPATCAEMRCEFGARCVE 914

Query: 70   --------RPPMTEGFWGGAGGSGQEAAYSVRNSRLKA-----------STISPVSRVTR 110
                     P +T          G +        +LK             ++ P      
Sbjct: 915  ESGSAHCVCPMLTCPEANATKVCGSDGVTYGNECQLKTIACRQGLQISIQSLGPCQEAVA 974

Query: 111  PRCRRASLHVKLGDPEMTLSPS------------SSTNFSRTVPLTCRRQRLWKLQPRTT 158
            P     S  V +  P + LS +            SST  S+T P    R R     PRTT
Sbjct: 975  PSTHPTSASVTVTTPGLLLSQALPAPPGALPLAPSSTAHSQTTPPPSSRPRTTASVPRTT 1034

Query: 159  RTSTFWVHP 167
                  V P
Sbjct: 1035 VWPVLTVPP 1043


>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 336

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 32/91 (35%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 8   GGPLGVRARCTLLRMSLSAGPG--VAGETRQ-----AARRWASGPSGGGGDAGATERRRD 60
           GGP  V A       S    PG    G+ R+     AA  WAS  S          RRR 
Sbjct: 145 GGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWAS--SATAWRLPQPRRRRR 202

Query: 61  TRCGLRPRCR---PPMTEGFWGGAGGSGQEA 88
             C    RCR   PPM     GG GG+G  A
Sbjct: 203 PTCPCCSRCRELSPPMGPDLGGGGGGAGAGA 233


>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
            containing 2 [Homo sapiens]
          Length = 1455

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 25/67 (37%), Positives = 27/67 (40%), Gaps = 9/67 (13%)

Query: 6    RAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGL 65
            RAGG    RA      +    GPG A           +GP GGG  A   E R   R G 
Sbjct: 1362 RAGGKEAPRAAAGS-ELCRREGPGAAPAF--------AGPGGGGSGALEAEGRAGARAGP 1412

Query: 66   RPRCRPP 72
            RP  RPP
Sbjct: 1413 RPGPRPP 1419


>gi|148727370 immediate early response 5-like [Homo sapiens]
          Length = 404

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 17/128 (13%)

Query: 188 RYPAARGSIHQVQK--QVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRWP---- 241
           R PAAR  +HQ+ +  Q+ + + +H H H    G  A   A AP    A + S  P    
Sbjct: 103 REPAARHQLHQLHQLHQLHLQQQLHQHQHPAPRGCAAAAAAGAP-AGGAGALSELPGCAA 161

Query: 242 ------SEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEAS---GGALQMSK 292
                 + +R   L P   GP   P       A   +   DP  P+  S   G A   + 
Sbjct: 162 LQPPHGAPHRGQPLEPLQPGPAPLPLPLPP-PAPAALCPRDPRAPAACSAPPGAAPPAAA 220

Query: 293 WLPAAAPA 300
             P A+PA
Sbjct: 221 ASPPASPA 228


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 28  PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87
           PG AG   +       GP+G  G  GA   R +T         PP   GF G  G  GQ 
Sbjct: 794 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGET--------GPPGPAGFAGPPGADGQP 845

Query: 88  AA 89
            A
Sbjct: 846 GA 847



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 28  PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGG 83
           PG  GE  +A ++  +G  G  G +GA   +  T      G R    PP   GF G AG 
Sbjct: 845 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 904

Query: 84  SG 85
            G
Sbjct: 905 VG 906


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 28  PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87
           PG AG   +       GP+G  G  GA   R +T         PP   GF G  G  GQ 
Sbjct: 725 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGET--------GPPGPAGFAGPPGADGQP 776

Query: 88  AA 89
            A
Sbjct: 777 GA 778



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 28  PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGG 83
           PG  GE  +A ++  +G  G  G +GA   +  T      G R    PP   GF G AG 
Sbjct: 776 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 835

Query: 84  SG 85
            G
Sbjct: 836 VG 837


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)

Query: 224  WNASAPLLNRASSASRWPSEYRKPG-LAPGTLGPESTPSSAASWEAAIGVTRADPTWPSE 282
            WN    + N  S+ S  PS     G +   TL P  TPS A S EA+ G      T+P  
Sbjct: 1190 WN----MPNLPSTTSLTPSNIPTSGAIGKSTLVPLDTPSPATSLEASEGGLPTLSTYPES 1245

Query: 283  ASGGALQMSKWLPAAAPATL 302
             +  ++ +     + +P+T+
Sbjct: 1246 TNTPSIHLGAHASSESPSTI 1265



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 22/195 (11%)

Query: 79   GGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPR--------CRRASLHVKLGDPEMTLS 130
            G A  SG  ++    ++  + S +SP +  +R           R+ ++ V L    +TLS
Sbjct: 3020 GQAARSGSSSSPISLSTEKETSFLSPTASTSRKTSLFLGPSMARQPNILVHLQTSALTLS 3079

Query: 131  PSSSTNFSRTVP--LTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLLAVQEQVDR 188
            P+S+ N S+  P  LT   Q + + +  T  T T    P      +    LL V    + 
Sbjct: 3080 PTSTLNMSQEEPPELT-SSQTIAEEEGTTAETQTLTFTPS-----ETPTSLLPVSSPTE- 3132

Query: 189  YPAARGSIHQVQKQVWVSE-DVHDHGHQLGMGRGAVWNASAPLLNRASSASRWPSEYRKP 247
             P AR    +   + W S   V      +    G +          A   S WP+   + 
Sbjct: 3133 -PTAR---RKSSPETWASSISVPAKTSLVETTDGTLVTTIKMSSQAAQGNSTWPAPAEET 3188

Query: 248  GLAPGTLGPESTPSS 262
            G +P    P S   S
Sbjct: 3189 GSSPAGTSPGSPEMS 3203


>gi|239757949 PREDICTED: similar to CTL-recognized antigen on
           melanoma (CAMEL) [Homo sapiens]
          Length = 154

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 5   GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQ--AARRWASGPSGGGGDAGATERRRD-T 61
           GR   P GVR    LLR    A  G  G T    +   + S   G GG+ GA  RR+   
Sbjct: 42  GREEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQ 101

Query: 62  RCGLRPRCR 70
             G R R R
Sbjct: 102 EVGGRARSR 110


>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 426

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 12  GVRARCTLLRMSLSAGPGVAGET--RQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC 69
           G R  C L    + AGP   G    R+AAR+W     G G       +    R G+ PR 
Sbjct: 259 GRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 318

Query: 70  RPPMT 74
           R   T
Sbjct: 319 RGSST 323


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 12  GVRARCTLLRMSLSAGPGVAGET--RQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC 69
           G R  C L    + AGP   G    R+AAR+W     G G       +    R G+ PR 
Sbjct: 353 GRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 412

Query: 70  RPPMT 74
           R   T
Sbjct: 413 RGSST 417


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 12  GVRARCTLLRMSLSAGPGVAGET--RQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC 69
           G R  C L    + AGP   G    R+AAR+W     G G       +    R G+ PR 
Sbjct: 353 GRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 412

Query: 70  RPPMT 74
           R   T
Sbjct: 413 RGSST 417


>gi|55770876 notch4 preproprotein [Homo sapiens]
          Length = 2003

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 18/89 (20%)

Query: 12   GVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDA--------------GATER 57
            G   RC  L  S  AGP   G   QA R W+   +  GG A              G T R
Sbjct: 1856 GALPRCRTL--SAGAGPRGGGACLQA-RTWSVDLAARGGGAYSHCRSLSGVGAGGGPTPR 1912

Query: 58   RRDTRCGLR-PRCRPPMTEGFWGGAGGSG 85
             R    G+R PR  P +  G +G A G G
Sbjct: 1913 GRRFSAGMRGPRPNPAIMRGRYGVAAGRG 1941


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 5   GRAG--GPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTR 62
           GR G  GP G R +  +  M      G AGE  +A  R   GP G  G AG     +D  
Sbjct: 563 GRPGPPGPPGARGQAGV--MGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG-----KDGE 615

Query: 63  CGLRPRCRPPMTEGFWGGAGGSG 85
            G +    P    G  G  G +G
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAG 638



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 7    AGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTR---- 62
            A GP+G   +      +  AGP  AG       R  +GP G  GD G T  + D      
Sbjct: 1053 APGPVGPAGKSGDRGETGPAGP--AGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGH 1110

Query: 63   ---CGLRPRCRPPMTEGFWGGAGGSG 85
                GL+    PP + G  G +G SG
Sbjct: 1111 RGFSGLQGPPGPPGSPGEQGPSGASG 1136



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 28  PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGG 83
           PG  GE   A  +  +GP G  G AG      +       G R    PP   GF G AG 
Sbjct: 823 PGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGR 882

Query: 84  SG 85
            G
Sbjct: 883 VG 884



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 28  PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87
           PG AG          SGP+G  G  GA         G R    PP   GF G  G  GQ 
Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAP--------GDRGEPGPPGPAGFAGPPGADGQP 823

Query: 88  AA 89
            A
Sbjct: 824 GA 825



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 25  SAGPGVAGETRQAARRWASGPSGGG---------GDAGATERRRDTRCGLRPRCRPPMTE 75
           +  PG+AG       R  SGP G G         G+ GA   + DT  G +    P   +
Sbjct: 400 NGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDT--GAKGEPGPVGVQ 457

Query: 76  GFWGGAGGSGQEAA 89
           G  G AG  G+  A
Sbjct: 458 GPPGPAGEEGKRGA 471



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 28   PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSG 85
            PG  GE   +     +GP G  G AGA    +D   GL     PP   G  G AG  G
Sbjct: 1123 PGSPGEQGPSGASGPAGPRGPPGSAGAP--GKDGLNGLPGPIGPPGPRGRTGDAGPVG 1178


>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
          Length = 1952

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 15/184 (8%)

Query: 100  STISPVSRVTRPRCRRAS-LHVKLGDPEMTLSPSSSTNFS----RTVPLTCRRQRLWKLQ 154
            +T  P S  T    + ++  H K G  E TLSP S T  S     T P +     L  + 
Sbjct: 1395 TTAFPASTTTSGLSQESTTFHSKPGSTETTLSPGSITTSSFAQEFTTPHSQPGSALSTVS 1454

Query: 155  PRTT-------RTSTFWVHP--QLLGQFQEGRQLLAVQEQVDRYPAARGSIHQVQKQVWV 205
            P +T        ++TF+  P       F     +    +Q   +P + G  H V      
Sbjct: 1455 PASTTVPGLSEESTTFYSSPGSTETTAFSHSNTMSIHSQQSTPFPDSPGFTHTVLPATLT 1514

Query: 206  SEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRWPSE-YRKPGLAPGTLGPESTPSSAA 264
            + D+            A      P  + AS     P+  Y  P     TL P S+ +S  
Sbjct: 1515 TTDIGQESTAFHSSSDATGTTPLPARSTASDLVGEPTTFYISPSPTYTTLFPASSSTSGL 1574

Query: 265  SWEA 268
            + E+
Sbjct: 1575 TEES 1578


>gi|89026265 PREDICTED: mucin 12 [Homo sapiens]
          Length = 978

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 15/184 (8%)

Query: 100 STISPVSRVTRPRCRRAS-LHVKLGDPEMTLSPSSSTNFS----RTVPLTCRRQRLWKLQ 154
           +T  P S  T    + ++  H K G  E TLSP S T  S     T P +     L  + 
Sbjct: 424 TTAFPASTTTSGLSQESTTFHSKPGSTETTLSPGSITTSSFAQEFTTPHSQPGSALSTVS 483

Query: 155 PRTT-------RTSTFWVHP--QLLGQFQEGRQLLAVQEQVDRYPAARGSIHQVQKQVWV 205
           P +T        ++TF+  P       F     +    +Q   +P + G  H V      
Sbjct: 484 PASTTVPGLSEESTTFYSSPGSTETTAFSHSNTMSIHSQQSTPFPDSPGFTHTVLPATLT 543

Query: 206 SEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRWPSE-YRKPGLAPGTLGPESTPSSAA 264
           + D+            A      P  + AS     P+  Y  P     TL P S+ +S  
Sbjct: 544 TTDIGQESTAFHSSSDATGTTPLPARSTASDLVGEPTTFYISPSPTYTTLFPASSSTSGL 603

Query: 265 SWEA 268
           + E+
Sbjct: 604 TEES 607


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 15/184 (8%)

Query: 100  STISPVSRVTRPRCRRAS-LHVKLGDPEMTLSPSSSTNFS----RTVPLTCRRQRLWKLQ 154
            +T  P S  T    + ++  H K G  E TLSP S T  S     T P +     L  + 
Sbjct: 4921 TTAFPASTTTSGLSQESTTFHSKPGSTETTLSPGSITTSSFAQEFTTPHSQPGSALSTVS 4980

Query: 155  PRTT-------RTSTFWVHP--QLLGQFQEGRQLLAVQEQVDRYPAARGSIHQVQKQVWV 205
            P +T        ++TF+  P       F     +    +Q   +P + G  H V      
Sbjct: 4981 PASTTVPGLSEESTTFYSSPGSTETTAFSHSNTMSIHSQQSTPFPDSPGFTHTVLPATLT 5040

Query: 206  SEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRWPSE-YRKPGLAPGTLGPESTPSSAA 264
            + D+            A      P  + AS     P+  Y  P     TL P S+ +S  
Sbjct: 5041 TTDIGQESTAFHSSSDATGTTPLPARSTASDLVGEPTTFYISPSPTYTTLFPASSSTSGL 5100

Query: 265  SWEA 268
            + E+
Sbjct: 5101 TEES 5104


>gi|110681708 zinc finger protein 579 [Homo sapiens]
          Length = 562

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 39/132 (29%), Positives = 44/132 (33%), Gaps = 14/132 (10%)

Query: 29  GVAGETRQAARRWASGPSGGGGD--AGATERRRDTRCGLRPRCRPPMTE-GFWGGAGGSG 85
           G   +    AR  A GP GG G    GA+E       G     RPP  E  FW    G G
Sbjct: 333 GKKDDKASGARNSAKGPEGGEGAECGGASEGGEGQNGGDAAPARPPAGEPRFWCPECGKG 392

Query: 86  QEAAYSVRNSRLKASTISPVSRVTRPR--------CRRASLHVKLGDPEMTLSPSSSTNF 137
                 +R   +  S   P   V   R         R A +H   G P     P     F
Sbjct: 393 FRRRAHLRQHGVTHSGARPFQCVRCQREFKRLADLARHAQVHA--GGPAPHPCPRCPRRF 450

Query: 138 SRTVPLTCRRQR 149
           SR   L  R QR
Sbjct: 451 SRAYSL-LRHQR 461


>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
          Length = 1950

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 5    GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCG 64
            G AG    V     +   S++A PG +  + ++++   +GPS  GG  GAT     +  G
Sbjct: 1630 GEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPS-VGGKTGATSSEATSSEG 1688

Query: 65   LRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRP 111
            +       +T    G   GS  E       ++   +  SP  ++TRP
Sbjct: 1689 M-----SGVTGQSLGSTAGSDSEI-----TAKTSFTGSSPPGKLTRP 1725


>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 650

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 36/121 (29%), Positives = 44/121 (36%), Gaps = 24/121 (19%)

Query: 42  ASGPSGGGGDAGA----TERRR------------DTRC--GLRPRCRPPMTEGFWGGAGG 83
           A G  GG G AGA    +ER              DTR   G RPR  P  +   WG AGG
Sbjct: 155 AGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGG 214

Query: 84  SGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASL--HVKLGDPEMTLSPSSSTNFSRTV 141
                    R  +  +S      R + P   RAS     +   P     PSS+ +  R  
Sbjct: 215 LRPRGKRPARGKKRPSSQ----RRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRA 270

Query: 142 P 142
           P
Sbjct: 271 P 271


>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
            sapiens]
          Length = 2134

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 5    GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCG 64
            G AG    V     +   S++A PG +  + ++++   +GPS  GG  GAT     +  G
Sbjct: 1814 GEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPS-VGGKTGATSSEATSSEG 1872

Query: 65   LRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRP 111
            +       +T    G   GS  E       ++   +  SP  ++TRP
Sbjct: 1873 M-----SGVTGQSLGSTAGSDSEI-----TAKTSFTGSSPPGKLTRP 1909


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.130    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,864,449
Number of Sequences: 37866
Number of extensions: 703975
Number of successful extensions: 4178
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 3909
Number of HSP's gapped (non-prelim): 385
length of query: 303
length of database: 18,247,518
effective HSP length: 102
effective length of query: 201
effective length of database: 14,385,186
effective search space: 2891422386
effective search space used: 2891422386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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