BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239751837 PREDICTED: hypothetical protein [Homo sapiens] (303 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239751837 PREDICTED: hypothetical protein [Homo sapiens] 624 e-179 gi|239746328 PREDICTED: hypothetical protein XP_002343731 [Homo ... 624 e-179 gi|239757333 PREDICTED: hypothetical protein [Homo sapiens] 620 e-178 gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.063 gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ... 35 0.11 gi|239752536 PREDICTED: hypothetical protein XP_002346688 [Homo ... 35 0.11 gi|4507161 SRY-box 11 [Homo sapiens] 34 0.14 gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 34 0.14 gi|18466802 Ras and Rab interactor 2 [Homo sapiens] 34 0.18 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 33 0.24 gi|54873613 agrin [Homo sapiens] 33 0.31 gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 33 0.41 gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 33 0.41 gi|148727370 immediate early response 5-like [Homo sapiens] 33 0.41 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.53 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.53 gi|83367077 mucin 16 [Homo sapiens] 32 0.91 gi|239757949 PREDICTED: similar to CTL-recognized antigen on mel... 32 0.91 gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91 gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91 gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 32 0.91 gi|55770876 notch4 preproprotein [Homo sapiens] 32 0.91 gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 31 1.2 gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 31 1.2 gi|89026265 PREDICTED: mucin 12 [Homo sapiens] 31 1.2 gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 31 1.2 gi|110681708 zinc finger protein 579 [Homo sapiens] 31 1.2 gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] 31 1.5 gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5 gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 31 1.5 >gi|239751837 PREDICTED: hypothetical protein [Homo sapiens] Length = 303 Score = 624 bits (1608), Expect = e-179 Identities = 303/303 (100%), Positives = 303/303 (100%) Query: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD Sbjct: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60 Query: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV Sbjct: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120 Query: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL Sbjct: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180 Query: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW Sbjct: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240 Query: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA Sbjct: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300 Query: 301 TLF 303 TLF Sbjct: 301 TLF 303 >gi|239746328 PREDICTED: hypothetical protein XP_002343731 [Homo sapiens] Length = 303 Score = 624 bits (1608), Expect = e-179 Identities = 303/303 (100%), Positives = 303/303 (100%) Query: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD Sbjct: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60 Query: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV Sbjct: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120 Query: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL Sbjct: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180 Query: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW Sbjct: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240 Query: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA Sbjct: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300 Query: 301 TLF 303 TLF Sbjct: 301 TLF 303 >gi|239757333 PREDICTED: hypothetical protein [Homo sapiens] Length = 303 Score = 620 bits (1600), Expect = e-178 Identities = 302/303 (99%), Positives = 302/303 (99%) Query: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD Sbjct: 1 MERLGRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRD 60 Query: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV Sbjct: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120 Query: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLL 180 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTT TSTFWVHPQLLGQFQEGRQLL Sbjct: 121 KLGDPEMTLSPSSSTNFSRTVPLTCRRQRLWKLQPRTTWTSTFWVHPQLLGQFQEGRQLL 180 Query: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW Sbjct: 181 AVQEQVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRW 240 Query: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA Sbjct: 241 PSEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEASGGALQMSKWLPAAAPA 300 Query: 301 TLF 303 TLF Sbjct: 301 TLF 303 >gi|48762934 alpha 2 type I collagen [Homo sapiens] Length = 1366 Score = 35.4 bits (80), Expect = 0.063 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 8/69 (11%) Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87 PG AG T A+GP+G G G+ G R P GF G AG +GQ Sbjct: 684 PGPAGATGDRGEAGAAGPAGPAGPRGSP--------GERGEVGPAGPNGFAGPAGAAGQP 735 Query: 88 AAYSVRNSR 96 A R ++ Sbjct: 736 GAKGERGAK 744 Score = 28.5 bits (62), Expect = 7.7 Identities = 24/71 (33%), Positives = 26/71 (36%), Gaps = 11/71 (15%) Query: 26 AGP-GVAGETRQAARRWASGPSGGGGDAGAT----------ERRRDTRCGLRPRCRPPMT 74 AGP G AG+ R A GP G G G T G R PP Sbjct: 726 AGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGM 785 Query: 75 EGFWGGAGGSG 85 GF G AG +G Sbjct: 786 TGFPGAAGRTG 796 >gi|239758067 PREDICTED: similar to facioscapulohumeral muscular dystrophy [Homo sapiens] Length = 468 Score = 34.7 bits (78), Expect = 0.11 Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 36/205 (17%) Query: 113 CRRASLHVKLGDPEMTL-SPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQL-L 170 C S+ + G P M L +PS T+ + RR+ +W R + F +P L + Sbjct: 81 CPCPSVKFQPGLPAMALPTPSDGTHTAEAQGSGRRRRIVWTPSQREALRACFERNPYLGI 140 Query: 171 GQFQEGRQLLAVQE-------QVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMG-RGA 222 ++ Q + + E Q +R R H+ + + W HG G G R A Sbjct: 141 TTREQLAQAIGILEPRVPIWFQNERSSQLRQ--HRRKSRPWPGR----HGPPEGRGKRTA 194 Query: 223 VWNASAPLLNRASSASRWPSEYRKPGLAPGTLGPES-------------------TPSSA 263 V + L RA R+P K LA T+ PES P+ A Sbjct: 195 VTGSQTALFLRAFEKDRFPGIAAKEELARETVLPESRIQIWFQNRRARHPGQAGRAPTKA 254 Query: 264 AS-WEAAIGVTRADPTWPSEASGGA 287 S AA G DP+W + A GA Sbjct: 255 GSLCNAATGECHPDPSWVAFAHIGA 279 >gi|239752536 PREDICTED: hypothetical protein XP_002346688 [Homo sapiens] Length = 236 Score = 34.7 bits (78), Expect = 0.11 Identities = 54/205 (26%), Positives = 78/205 (38%), Gaps = 36/205 (17%) Query: 113 CRRASLHVKLGDPEMTL-SPSSSTNFSRTVPLTCRRQRLWKLQPRTTRTSTFWVHPQL-L 170 C S+ + G P M L +PS T+ + RR+ +W R + F +P L + Sbjct: 25 CPCPSVKFQPGLPAMALPTPSDGTHTAEAQGWGRRRRIVWTPSQREALRACFERNPYLGI 84 Query: 171 GQFQEGRQLLAVQE-------QVDRYPAARGSIHQVQKQVWVSEDVHDHGHQLGMG-RGA 222 ++ Q + + E Q +R R H+ + + W HG G G R A Sbjct: 85 TTREQLAQAIGILEPRVPIWFQNERSSQLRQ--HRRKSRPWPGR----HGPPEGRGKRTA 138 Query: 223 VWNASAPLLNRASSASRWPSEYRKPGLAPGTLGPES-------------------TPSSA 263 V + L RA R+P K LA T+ PES P+ A Sbjct: 139 VTGSQTALFLRAFEKDRFPGIAAKEELARETVLPESRIQIWFQNRRARHPGQAGRAPTKA 198 Query: 264 AS-WEAAIGVTRADPTWPSEASGGA 287 S AA G DP+W + A GA Sbjct: 199 GSLCNAATGECHPDPSWVAFAHIGA 223 >gi|4507161 SRY-box 11 [Homo sapiens] Length = 441 Score = 34.3 bits (77), Expect = 0.14 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 21 RMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGG 80 +M SA P + ++A G +GGG T + +CG + + P G G Sbjct: 125 KMDPSAKPSASQSPEKSAAGGGGGSAGGGAGGAKTSKGSSKKCG---KLKAPAAAGAKAG 181 Query: 81 AGGSGQEAAY 90 AG + Q Y Sbjct: 182 AGKAAQSGDY 191 >gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] Length = 953 Score = 34.3 bits (77), Expect = 0.14 Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Query: 59 RDTRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASL 118 R+ R RP PP G GSG ++YS +SR ++ ++S VS V+ +S Sbjct: 666 REARRKERPARTPPRRRTLSGSGSGSG--SSYSGSSSRSRSLSVSSVSSVSSATSSSSSA 723 Query: 119 H-VKLGDPEMTL-SPSSSTNFSRTVPLTCRRQR 149 H V D L SP SS + P R+++ Sbjct: 724 HSVDSEDMYADLASPVSSASSRSPAPAQTRKEK 756 >gi|18466802 Ras and Rab interactor 2 [Homo sapiens] Length = 895 Score = 33.9 bits (76), Expect = 0.18 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%) Query: 61 TRCGLRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASLHV 120 T G RP P + G G GG+ EAA + P S +RP C Sbjct: 376 TLSGGRPGAGPELELGTAGSPGGAPPEAAPG------DCTRAPPPSSESRPPCHGG--RQ 427 Query: 121 KLGDPEMTLSPSSSTNFSRTVPL 143 +L D ++ S S S F R++PL Sbjct: 428 RLSDMSISTSSSDSLEFDRSMPL 450 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 33.5 bits (75), Expect = 0.24 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 9 GPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPR 68 GP+G + S AGP AG A R A GP G GD G T R G++ Sbjct: 1053 GPVGPAGKSGDRGESGPAGP--AGAPGPAGSRGAPGPQGPRGDKGETGER--GAAGIKGH 1108 Query: 69 CRPPMTEGFWGGAGGSGQEAA 89 P G G G +GQ+ A Sbjct: 1109 RGFPGNPGAPGSPGPAGQQGA 1129 Score = 32.3 bits (72), Expect = 0.53 Identities = 25/65 (38%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 29 GVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGGS 84 G GE A G GG GDAGA R GLR PP EG G AG Sbjct: 654 GKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPP 713 Query: 85 GQEAA 89 G A Sbjct: 714 GPPGA 718 Score = 31.2 bits (69), Expect = 1.2 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Query: 28 PGVAGETRQAARRWASGPSGGGGDAG-ATERRRDTRCGLRPRCRPPMTEGFWGGAGGSG 85 PG AGE R +GP+G G+ G A ER G R P +G GG G G Sbjct: 479 PGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRG 537 Score = 29.6 bits (65), Expect = 3.4 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 13/80 (16%) Query: 7 AGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLR 66 A GPLG+ ++ G+AG R + GP G G++G + GL Sbjct: 943 APGPLGIAG--------ITGARGLAGPPGMPGPRGSPGPQGVKGESG-----KPGANGLS 989 Query: 67 PRCRPPMTEGFWGGAGGSGQ 86 PP +G G AG +G+ Sbjct: 990 GERGPPGPQGLPGLAGTAGE 1009 Score = 29.3 bits (64), Expect = 4.5 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 7/76 (9%) Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDT-------RCGLRPRCRPPMTEGFWGG 80 PG+AG R +GP G G GA + + G + PP G GG Sbjct: 788 PGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGG 847 Query: 81 AGGSGQEAAYSVRNSR 96 +G +G V+ R Sbjct: 848 SGPAGPPGPQGVKGER 863 >gi|54873613 agrin [Homo sapiens] Length = 2045 Score = 33.1 bits (74), Expect = 0.31 Identities = 47/189 (24%), Positives = 60/189 (31%), Gaps = 34/189 (17%) Query: 13 VRARCTLLRMSLSAGPGVAG-ETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC-- 69 VR C + S PGVAG + Q A GP+G DA A + RC RC Sbjct: 855 VRDDCEQMTGLCSCKPGVAGPKCGQCPDGRALGPAGCEADASAPATCAEMRCEFGARCVE 914 Query: 70 --------RPPMTEGFWGGAGGSGQEAAYSVRNSRLKA-----------STISPVSRVTR 110 P +T G + +LK ++ P Sbjct: 915 ESGSAHCVCPMLTCPEANATKVCGSDGVTYGNECQLKTIACRQGLQISIQSLGPCQEAVA 974 Query: 111 PRCRRASLHVKLGDPEMTLSPS------------SSTNFSRTVPLTCRRQRLWKLQPRTT 158 P S V + P + LS + SST S+T P R R PRTT Sbjct: 975 PSTHPTSASVTVTTPGLLLSQALPAPPGALPLAPSSTAHSQTTPPPSSRPRTTASVPRTT 1034 Query: 159 RTSTFWVHP 167 V P Sbjct: 1035 VWPVLTVPP 1043 >gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] Length = 336 Score = 32.7 bits (73), Expect = 0.41 Identities = 32/91 (35%), Positives = 35/91 (38%), Gaps = 12/91 (13%) Query: 8 GGPLGVRARCTLLRMSLSAGPG--VAGETRQ-----AARRWASGPSGGGGDAGATERRRD 60 GGP V A S PG G+ R+ AA WAS S RRR Sbjct: 145 GGPGQVAAAAAAAPASSPLPPGRWCLGDQRRLPPATAAPPWAS--SATAWRLPQPRRRRR 202 Query: 61 TRCGLRPRCR---PPMTEGFWGGAGGSGQEA 88 C RCR PPM GG GG+G A Sbjct: 203 PTCPCCSRCRELSPPMGPDLGGGGGGAGAGA 233 >gi|27436957 membrane associated guanylate kinase, WW and PDZ domain containing 2 [Homo sapiens] Length = 1455 Score = 32.7 bits (73), Expect = 0.41 Identities = 25/67 (37%), Positives = 27/67 (40%), Gaps = 9/67 (13%) Query: 6 RAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGL 65 RAGG RA + GPG A +GP GGG A E R R G Sbjct: 1362 RAGGKEAPRAAAGS-ELCRREGPGAAPAF--------AGPGGGGSGALEAEGRAGARAGP 1412 Query: 66 RPRCRPP 72 RP RPP Sbjct: 1413 RPGPRPP 1419 >gi|148727370 immediate early response 5-like [Homo sapiens] Length = 404 Score = 32.7 bits (73), Expect = 0.41 Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 17/128 (13%) Query: 188 RYPAARGSIHQVQK--QVWVSEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRWP---- 241 R PAAR +HQ+ + Q+ + + +H H H G A A AP A + S P Sbjct: 103 REPAARHQLHQLHQLHQLHLQQQLHQHQHPAPRGCAAAAAAGAP-AGGAGALSELPGCAA 161 Query: 242 ------SEYRKPGLAPGTLGPESTPSSAASWEAAIGVTRADPTWPSEAS---GGALQMSK 292 + +R L P GP P A + DP P+ S G A + Sbjct: 162 LQPPHGAPHRGQPLEPLQPGPAPLPLPLPP-PAPAALCPRDPRAPAACSAPPGAAPPAAA 220 Query: 293 WLPAAAPA 300 P A+PA Sbjct: 221 ASPPASPA 228 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 32.3 bits (72), Expect = 0.53 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 8/62 (12%) Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87 PG AG + GP+G G GA R +T PP GF G G GQ Sbjct: 794 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGET--------GPPGPAGFAGPPGADGQP 845 Query: 88 AA 89 A Sbjct: 846 GA 847 Score = 30.0 bits (66), Expect = 2.6 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGG 83 PG GE +A ++ +G G G +GA + T G R PP GF G AG Sbjct: 845 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 904 Query: 84 SG 85 G Sbjct: 905 VG 906 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 32.3 bits (72), Expect = 0.53 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 8/62 (12%) Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87 PG AG + GP+G G GA R +T PP GF G G GQ Sbjct: 725 PGPAGANGEKGEVGPPGPAGSAGARGAPGERGET--------GPPGPAGFAGPPGADGQP 776 Query: 88 AA 89 A Sbjct: 777 GA 778 Score = 30.0 bits (66), Expect = 2.6 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%) Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGG 83 PG GE +A ++ +G G G +GA + T G R PP GF G AG Sbjct: 776 PGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGR 835 Query: 84 SG 85 G Sbjct: 836 VG 837 >gi|83367077 mucin 16 [Homo sapiens] Length = 14507 Score = 31.6 bits (70), Expect = 0.91 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%) Query: 224 WNASAPLLNRASSASRWPSEYRKPG-LAPGTLGPESTPSSAASWEAAIGVTRADPTWPSE 282 WN + N S+ S PS G + TL P TPS A S EA+ G T+P Sbjct: 1190 WN----MPNLPSTTSLTPSNIPTSGAIGKSTLVPLDTPSPATSLEASEGGLPTLSTYPES 1245 Query: 283 ASGGALQMSKWLPAAAPATL 302 + ++ + + +P+T+ Sbjct: 1246 TNTPSIHLGAHASSESPSTI 1265 Score = 30.0 bits (66), Expect = 2.6 Identities = 45/195 (23%), Positives = 72/195 (36%), Gaps = 22/195 (11%) Query: 79 GGAGGSGQEAAYSVRNSRLKASTISPVSRVTRPR--------CRRASLHVKLGDPEMTLS 130 G A SG ++ ++ + S +SP + +R R+ ++ V L +TLS Sbjct: 3020 GQAARSGSSSSPISLSTEKETSFLSPTASTSRKTSLFLGPSMARQPNILVHLQTSALTLS 3079 Query: 131 PSSSTNFSRTVP--LTCRRQRLWKLQPRTTRTSTFWVHPQLLGQFQEGRQLLAVQEQVDR 188 P+S+ N S+ P LT Q + + + T T T P + LL V + Sbjct: 3080 PTSTLNMSQEEPPELT-SSQTIAEEEGTTAETQTLTFTPS-----ETPTSLLPVSSPTE- 3132 Query: 189 YPAARGSIHQVQKQVWVSE-DVHDHGHQLGMGRGAVWNASAPLLNRASSASRWPSEYRKP 247 P AR + + W S V + G + A S WP+ + Sbjct: 3133 -PTAR---RKSSPETWASSISVPAKTSLVETTDGTLVTTIKMSSQAAQGNSTWPAPAEET 3188 Query: 248 GLAPGTLGPESTPSS 262 G +P P S S Sbjct: 3189 GSSPAGTSPGSPEMS 3203 >gi|239757949 PREDICTED: similar to CTL-recognized antigen on melanoma (CAMEL) [Homo sapiens] Length = 154 Score = 31.6 bits (70), Expect = 0.91 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 5 GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQ--AARRWASGPSGGGGDAGATERRRD-T 61 GR P GVR LLR A G G T + + S G GG+ GA RR+ Sbjct: 42 GREEAPRGVRMAVPLLRRMEGAPAGPGGRTAACFSCILFCSVLGGSGGEVGAVRRRQQGQ 101 Query: 62 RCGLRPRCR 70 G R R R Sbjct: 102 EVGGRARSR 110 >gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] Length = 426 Score = 31.6 bits (70), Expect = 0.91 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 12 GVRARCTLLRMSLSAGPGVAGET--RQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC 69 G R C L + AGP G R+AAR+W G G + R G+ PR Sbjct: 259 GRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 318 Query: 70 RPPMT 74 R T Sbjct: 319 RGSST 323 >gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] Length = 520 Score = 31.6 bits (70), Expect = 0.91 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 12 GVRARCTLLRMSLSAGPGVAGET--RQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC 69 G R C L + AGP G R+AAR+W G G + R G+ PR Sbjct: 353 GRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 412 Query: 70 RPPMT 74 R T Sbjct: 413 RGSST 417 >gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] Length = 520 Score = 31.6 bits (70), Expect = 0.91 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 2/65 (3%) Query: 12 GVRARCTLLRMSLSAGPGVAGET--RQAARRWASGPSGGGGDAGATERRRDTRCGLRPRC 69 G R C L + AGP G R+AAR+W G G + R G+ PR Sbjct: 353 GRRQGCALGSPPIPAGPAAPGRAGERRAARQWRKRGGGPGVSPREGAQGEGVRGGVTPRA 412 Query: 70 RPPMT 74 R T Sbjct: 413 RGSST 417 >gi|55770876 notch4 preproprotein [Homo sapiens] Length = 2003 Score = 31.6 bits (70), Expect = 0.91 Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 18/89 (20%) Query: 12 GVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDA--------------GATER 57 G RC L S AGP G QA R W+ + GG A G T R Sbjct: 1856 GALPRCRTL--SAGAGPRGGGACLQA-RTWSVDLAARGGGAYSHCRSLSGVGAGGGPTPR 1912 Query: 58 RRDTRCGLR-PRCRPPMTEGFWGGAGGSG 85 R G+R PR P + G +G A G G Sbjct: 1913 GRRFSAGMRGPRPNPAIMRGRYGVAAGRG 1941 >gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] Length = 1464 Score = 31.2 bits (69), Expect = 1.2 Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 9/83 (10%) Query: 5 GRAG--GPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTR 62 GR G GP G R + + M G AGE +A R GP G G AG +D Sbjct: 563 GRPGPPGPPGARGQAGV--MGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG-----KDGE 615 Query: 63 CGLRPRCRPPMTEGFWGGAGGSG 85 G + P G G G +G Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAG 638 Score = 30.8 bits (68), Expect = 1.5 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 9/86 (10%) Query: 7 AGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTR---- 62 A GP+G + + AGP AG R +GP G GD G T + D Sbjct: 1053 APGPVGPAGKSGDRGETGPAGP--AGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGH 1110 Query: 63 ---CGLRPRCRPPMTEGFWGGAGGSG 85 GL+ PP + G G +G SG Sbjct: 1111 RGFSGLQGPPGPPGSPGEQGPSGASG 1136 Score = 30.4 bits (67), Expect = 2.0 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 4/62 (6%) Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRC----GLRPRCRPPMTEGFWGGAGG 83 PG GE A + +GP G G AG + G R PP GF G AG Sbjct: 823 PGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGR 882 Query: 84 SG 85 G Sbjct: 883 VG 884 Score = 30.0 bits (66), Expect = 2.6 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 8/62 (12%) Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSGQE 87 PG AG SGP+G G GA G R PP GF G G GQ Sbjct: 772 PGPAGAPGDKGESGPSGPAGPTGARGAP--------GDRGEPGPPGPAGFAGPPGADGQP 823 Query: 88 AA 89 A Sbjct: 824 GA 825 Score = 28.9 bits (63), Expect = 5.9 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 11/74 (14%) Query: 25 SAGPGVAGETRQAARRWASGPSGGG---------GDAGATERRRDTRCGLRPRCRPPMTE 75 + PG+AG R SGP G G G+ GA + DT G + P + Sbjct: 400 NGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDT--GAKGEPGPVGVQ 457 Query: 76 GFWGGAGGSGQEAA 89 G G AG G+ A Sbjct: 458 GPPGPAGEEGKRGA 471 Score = 28.5 bits (62), Expect = 7.7 Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 28 PGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGFWGGAGGSG 85 PG GE + +GP G G AGA +D GL PP G G AG G Sbjct: 1123 PGSPGEQGPSGASGPAGPRGPPGSAGAP--GKDGLNGLPGPIGPPGPRGRTGDAGPVG 1178 >gi|239754668 PREDICTED: mucin 12 [Homo sapiens] Length = 1952 Score = 31.2 bits (69), Expect = 1.2 Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 15/184 (8%) Query: 100 STISPVSRVTRPRCRRAS-LHVKLGDPEMTLSPSSSTNFS----RTVPLTCRRQRLWKLQ 154 +T P S T + ++ H K G E TLSP S T S T P + L + Sbjct: 1395 TTAFPASTTTSGLSQESTTFHSKPGSTETTLSPGSITTSSFAQEFTTPHSQPGSALSTVS 1454 Query: 155 PRTT-------RTSTFWVHP--QLLGQFQEGRQLLAVQEQVDRYPAARGSIHQVQKQVWV 205 P +T ++TF+ P F + +Q +P + G H V Sbjct: 1455 PASTTVPGLSEESTTFYSSPGSTETTAFSHSNTMSIHSQQSTPFPDSPGFTHTVLPATLT 1514 Query: 206 SEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRWPSE-YRKPGLAPGTLGPESTPSSAA 264 + D+ A P + AS P+ Y P TL P S+ +S Sbjct: 1515 TTDIGQESTAFHSSSDATGTTPLPARSTASDLVGEPTTFYISPSPTYTTLFPASSSTSGL 1574 Query: 265 SWEA 268 + E+ Sbjct: 1575 TEES 1578 >gi|89026265 PREDICTED: mucin 12 [Homo sapiens] Length = 978 Score = 31.2 bits (69), Expect = 1.2 Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 15/184 (8%) Query: 100 STISPVSRVTRPRCRRAS-LHVKLGDPEMTLSPSSSTNFS----RTVPLTCRRQRLWKLQ 154 +T P S T + ++ H K G E TLSP S T S T P + L + Sbjct: 424 TTAFPASTTTSGLSQESTTFHSKPGSTETTLSPGSITTSSFAQEFTTPHSQPGSALSTVS 483 Query: 155 PRTT-------RTSTFWVHP--QLLGQFQEGRQLLAVQEQVDRYPAARGSIHQVQKQVWV 205 P +T ++TF+ P F + +Q +P + G H V Sbjct: 484 PASTTVPGLSEESTTFYSSPGSTETTAFSHSNTMSIHSQQSTPFPDSPGFTHTVLPATLT 543 Query: 206 SEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRWPSE-YRKPGLAPGTLGPESTPSSAA 264 + D+ A P + AS P+ Y P TL P S+ +S Sbjct: 544 TTDIGQESTAFHSSSDATGTTPLPARSTASDLVGEPTTFYISPSPTYTTLFPASSSTSGL 603 Query: 265 SWEA 268 + E+ Sbjct: 604 TEES 607 >gi|239743293 PREDICTED: mucin 12 [Homo sapiens] Length = 5478 Score = 31.2 bits (69), Expect = 1.2 Identities = 43/184 (23%), Positives = 65/184 (35%), Gaps = 15/184 (8%) Query: 100 STISPVSRVTRPRCRRAS-LHVKLGDPEMTLSPSSSTNFS----RTVPLTCRRQRLWKLQ 154 +T P S T + ++ H K G E TLSP S T S T P + L + Sbjct: 4921 TTAFPASTTTSGLSQESTTFHSKPGSTETTLSPGSITTSSFAQEFTTPHSQPGSALSTVS 4980 Query: 155 PRTT-------RTSTFWVHP--QLLGQFQEGRQLLAVQEQVDRYPAARGSIHQVQKQVWV 205 P +T ++TF+ P F + +Q +P + G H V Sbjct: 4981 PASTTVPGLSEESTTFYSSPGSTETTAFSHSNTMSIHSQQSTPFPDSPGFTHTVLPATLT 5040 Query: 206 SEDVHDHGHQLGMGRGAVWNASAPLLNRASSASRWPSE-YRKPGLAPGTLGPESTPSSAA 264 + D+ A P + AS P+ Y P TL P S+ +S Sbjct: 5041 TTDIGQESTAFHSSSDATGTTPLPARSTASDLVGEPTTFYISPSPTYTTLFPASSSTSGL 5100 Query: 265 SWEA 268 + E+ Sbjct: 5101 TEES 5104 >gi|110681708 zinc finger protein 579 [Homo sapiens] Length = 562 Score = 31.2 bits (69), Expect = 1.2 Identities = 39/132 (29%), Positives = 44/132 (33%), Gaps = 14/132 (10%) Query: 29 GVAGETRQAARRWASGPSGGGGD--AGATERRRDTRCGLRPRCRPPMTE-GFWGGAGGSG 85 G + AR A GP GG G GA+E G RPP E FW G G Sbjct: 333 GKKDDKASGARNSAKGPEGGEGAECGGASEGGEGQNGGDAAPARPPAGEPRFWCPECGKG 392 Query: 86 QEAAYSVRNSRLKASTISPVSRVTRPR--------CRRASLHVKLGDPEMTLSPSSSTNF 137 +R + S P V R R A +H G P P F Sbjct: 393 FRRRAHLRQHGVTHSGARPFQCVRCQREFKRLADLARHAQVHA--GGPAPHPCPRCPRRF 450 Query: 138 SRTVPLTCRRQR 149 SR L R QR Sbjct: 451 SRAYSL-LRHQR 461 >gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] Length = 1950 Score = 30.8 bits (68), Expect = 1.5 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 11/107 (10%) Query: 5 GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCG 64 G AG V + S++A PG + + ++++ +GPS GG GAT + G Sbjct: 1630 GEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPS-VGGKTGATSSEATSSEG 1688 Query: 65 LRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRP 111 + +T G GS E ++ + SP ++TRP Sbjct: 1689 M-----SGVTGQSLGSTAGSDSEI-----TAKTSFTGSSPPGKLTRP 1725 >gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] Length = 650 Score = 30.8 bits (68), Expect = 1.5 Identities = 36/121 (29%), Positives = 44/121 (36%), Gaps = 24/121 (19%) Query: 42 ASGPSGGGGDAGA----TERRR------------DTRC--GLRPRCRPPMTEGFWGGAGG 83 A G GG G AGA +ER DTR G RPR P + WG AGG Sbjct: 155 AGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGG 214 Query: 84 SGQEAAYSVRNSRLKASTISPVSRVTRPRCRRASL--HVKLGDPEMTLSPSSSTNFSRTV 141 R + +S R + P RAS + P PSS+ + R Sbjct: 215 LRPRGKRPARGKKRPSSQ----RRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRA 270 Query: 142 P 142 P Sbjct: 271 P 271 >gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo sapiens] Length = 2134 Score = 30.8 bits (68), Expect = 1.5 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 11/107 (10%) Query: 5 GRAGGPLGVRARCTLLRMSLSAGPGVAGETRQAARRWASGPSGGGGDAGATERRRDTRCG 64 G AG V + S++A PG + + ++++ +GPS GG GAT + G Sbjct: 1814 GEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPS-VGGKTGATSSEATSSEG 1872 Query: 65 LRPRCRPPMTEGFWGGAGGSGQEAAYSVRNSRLKASTISPVSRVTRP 111 + +T G GS E ++ + SP ++TRP Sbjct: 1873 M-----SGVTGQSLGSTAGSDSEI-----TAKTSFTGSSPPGKLTRP 1909 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.130 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,864,449 Number of Sequences: 37866 Number of extensions: 703975 Number of successful extensions: 4178 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 94 Number of HSP's that attempted gapping in prelim test: 3909 Number of HSP's gapped (non-prelim): 385 length of query: 303 length of database: 18,247,518 effective HSP length: 102 effective length of query: 201 effective length of database: 14,385,186 effective search space: 2891422386 effective search space used: 2891422386 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.