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Search of human proteins with 239751829
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751829 PREDICTED: hypothetical protein [Homo sapiens]
(83 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757322 PREDICTED: hypothetical protein [Homo sapiens] 177 1e-45
gi|239751829 PREDICTED: hypothetical protein [Homo sapiens] 177 1e-45
gi|239746320 PREDICTED: hypothetical protein XP_002343695 [Homo ... 177 1e-45
gi|67003568 skin-specific protein 32 [Homo sapiens] 33 0.049
gi|116517292 cut-like 2 [Homo sapiens] 32 0.083
gi|194097341 period 1 [Homo sapiens] 31 0.24
gi|217272880 sphingosine kinase 1 isoform 2 [Homo sapiens] 30 0.41
gi|193083172 nuclear assembly factor 1 homolog isoform b [Homo s... 30 0.41
gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo s... 30 0.41
gi|95007020 transmembrane protein 70 isoform b [Homo sapiens] 29 0.92
gi|34147498 transmembrane protein 70 isoform a [Homo sapiens] 29 0.92
gi|239758067 PREDICTED: similar to facioscapulohumeral muscular ... 28 1.2
gi|239757320 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239751827 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239746318 PREDICTED: hypothetical protein XP_002343694 [Homo ... 28 1.2
gi|53759134 endonuclease G precursor [Homo sapiens] 28 1.6
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 28 1.6
gi|7662310 FERM, RhoGEF and pleckstrin domain protein 2 [Homo sa... 28 1.6
gi|61966733 hypothetical protein LOC388199 [Homo sapiens] 28 1.6
gi|238859653 pleckstrin homology domain containing family A memb... 28 2.0
gi|238859651 pleckstrin homology domain containing family A memb... 28 2.0
gi|71852582 aryl hydrocarbon receptor nuclear translocator-like ... 28 2.0
gi|71852580 aryl hydrocarbon receptor nuclear translocator-like ... 28 2.0
gi|42716311 aryl hydrocarbon receptor nuclear translocator-like ... 28 2.0
gi|239756124 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo ... 28 2.0
gi|239746217 PREDICTED: zinc finger protein 66 [Homo sapiens] 28 2.0
gi|239745773 PREDICTED: hypothetical protein XP_002343550 [Homo ... 28 2.0
gi|239745771 PREDICTED: hypothetical protein XP_002343549 [Homo ... 28 2.0
gi|239745769 PREDICTED: hypothetical protein XP_002343548 [Homo ... 28 2.0
>gi|239757322 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 177 bits (450), Expect = 1e-45
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MMRLYRTLQGEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGP 60
MMRLYRTLQGEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGP
Sbjct: 1 MMRLYRTLQGEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGP 60
Query: 61 PARAPGALGTGDSRCCSASESEG 83
PARAPGALGTGDSRCCSASESEG
Sbjct: 61 PARAPGALGTGDSRCCSASESEG 83
>gi|239751829 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 177 bits (450), Expect = 1e-45
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MMRLYRTLQGEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGP 60
MMRLYRTLQGEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGP
Sbjct: 1 MMRLYRTLQGEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGP 60
Query: 61 PARAPGALGTGDSRCCSASESEG 83
PARAPGALGTGDSRCCSASESEG
Sbjct: 61 PARAPGALGTGDSRCCSASESEG 83
>gi|239746320 PREDICTED: hypothetical protein XP_002343695 [Homo
sapiens]
Length = 83
Score = 177 bits (450), Expect = 1e-45
Identities = 83/83 (100%), Positives = 83/83 (100%)
Query: 1 MMRLYRTLQGEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGP 60
MMRLYRTLQGEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGP
Sbjct: 1 MMRLYRTLQGEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGP 60
Query: 61 PARAPGALGTGDSRCCSASESEG 83
PARAPGALGTGDSRCCSASESEG
Sbjct: 61 PARAPGALGTGDSRCCSASESEG 83
>gi|67003568 skin-specific protein 32 [Homo sapiens]
Length = 250
Score = 33.1 bits (74), Expect = 0.049
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 39 APISRAHCSSSPRTPGAAWVGPPARAPGALGTGDSRCCSASESEG 83
AP S ++C +PRT G + + + P TG S CC S S G
Sbjct: 164 APCSTSYCCLAPRTFGVSPLRRWIQRPQNCNTGSSGCCENSGSSG 208
>gi|116517292 cut-like 2 [Homo sapiens]
Length = 1486
Score = 32.3 bits (72), Expect = 0.083
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 17 CSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGPPARAPGALGTGD 72
CS ++ S A S + S +P+ + SP PGA PPA+ P A T D
Sbjct: 1389 CSLEVSLNSPSAASSPGLMMSVSPVPSSSAPISPSPPGA----PPAKVPSASPTAD 1440
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 10 GEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHC---SSSPRTPGAAWVGPPARAP 65
GE C + +RR +C ++ R P + A C SP P W PPA P
Sbjct: 818 GERGCHHGPAPPSRRHHCRSKAKRSRHHQNPRAEAPCYVSHPSPVPPSTPWPTPPATTP 876
>gi|217272880 sphingosine kinase 1 isoform 2 [Homo sapiens]
Length = 470
Score = 30.0 bits (66), Expect = 0.41
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 36 RSWAPISRAHCSSSPRTPGAAWV---GPPARAPGALGTGDSRCCSA 78
RSW P+ A +PR P AA P A APG G SR C A
Sbjct: 10 RSWTPLPLA----APRGPAAAGNDAGAPAATAPGGEGEPHSRPCDA 51
>gi|193083172 nuclear assembly factor 1 homolog isoform b [Homo
sapiens]
Length = 389
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 40 PISRAHCSSSPRTPGAAWVGPPARAPGALGTGDSRCCSASESE 82
P C +PGAA PARAP +L T DS S SE++
Sbjct: 86 PAESPACGDCVTSPGAA---EPARAPDSLETSDSDSDSDSETD 125
>gi|193083157 nuclear assembly factor 1 homolog isoform a [Homo
sapiens]
Length = 494
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 40 PISRAHCSSSPRTPGAAWVGPPARAPGALGTGDSRCCSASESE 82
P C +PGAA PARAP +L T DS S SE++
Sbjct: 86 PAESPACGDCVTSPGAA---EPARAPDSLETSDSDSDSDSETD 125
>gi|95007020 transmembrane protein 70 isoform b [Homo sapiens]
Length = 107
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 23 RRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGPPARA 64
R + CA ++A+R A +SRA SS P P A W P+ A
Sbjct: 20 RTALCA--AAALRGPRASVSRASSSSGPSGPVAGWSTGPSGA 59
>gi|34147498 transmembrane protein 70 isoform a [Homo sapiens]
Length = 260
Score = 28.9 bits (63), Expect = 0.92
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 23 RRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGPPARA 64
R + CA ++A+R A +SRA SS P P A W P+ A
Sbjct: 20 RTALCA--AAALRGPRASVSRASSSSGPSGPVAGWSTGPSGA 59
>gi|239758067 PREDICTED: similar to facioscapulohumeral muscular
dystrophy [Homo sapiens]
Length = 468
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 20 SLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGPPARAPGALG 69
S +R+ Y +L A R + + ++ SSSP TP V P A PG+ G
Sbjct: 291 SSSRKRYSSLLRGASREA----ASSNASSSPGTPFLGKVVPAAETPGSPG 336
>gi|239757320 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 14 CRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAW---VGPPA 62
C CC S+ +C L S SWA S+ H SS+P P + W +G PA
Sbjct: 100 CECCPLSVP---FCELAPST--PSWATSSQRHNSSTP--PQSFWNASLGTPA 144
>gi|239751827 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 14 CRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAW---VGPPA 62
C CC S+ +C L S SWA S+ H SS+P P + W +G PA
Sbjct: 100 CECCPLSVP---FCELAPST--PSWATSSQRHNSSTP--PQSFWNASLGTPA 144
>gi|239746318 PREDICTED: hypothetical protein XP_002343694 [Homo
sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 14 CRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAW---VGPPA 62
C CC S+ +C L S SWA S+ H SS+P P + W +G PA
Sbjct: 100 CECCPLSVP---FCELAPST--PSWATSSQRHNSSTP--PQSFWNASLGTPA 144
>gi|53759134 endonuclease G precursor [Homo sapiens]
Length = 297
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 50 PRTPGAAWVGPPARAPGALGTGDSRCCSASESE 82
PRT GA WV R G GD R C E +
Sbjct: 87 PRTRGALWVVEQLRPERLRGDGDRRECDFREDD 119
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 32 SAIRRSWAPISRAHCSSSPRTPGAAWVGPPARAPGALGTGDSRCCSASESEG 83
S +R S SR S SP A P+R PG GT S S+S + G
Sbjct: 358 SDLRESRVQRSRMDSSVSPAATTACVPYAPSRPPGLPGTTTSSSSSSSSNTG 409
>gi|7662310 FERM, RhoGEF and pleckstrin domain protein 2 [Homo
sapiens]
Length = 1054
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 18 SSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGPPARAPG 66
SSSLT ++S A R ++ P TP A +GPPA PG
Sbjct: 426 SSSLTDPQVSYVKSPAAERRSGAVA-----GGPDTPSAQPLGPPALQPG 469
>gi|61966733 hypothetical protein LOC388199 [Homo sapiens]
Length = 402
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 28 ALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGPPARAPGALGTGDSRC 75
A + A RR+ P R S P PGA P R PGA G C
Sbjct: 338 AAQDPATRRTAPP--RRTASPEPPAPGAPLPACPGRIPGAARFGPRSC 383
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 48 SSPRTPGAAWVGPPA----RAPGALGTGDSRCCSASESEG 83
SSPR+P W PP A LG G R AS EG
Sbjct: 506 SSPRSPETDWGRPPGGDKDLASPHLGLGSPRVSRASSPEG 545
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 48 SSPRTPGAAWVGPPA----RAPGALGTGDSRCCSASESEG 83
SSPR+P W PP A LG G R AS EG
Sbjct: 531 SSPRSPETDWGRPPGGDKDLASPHLGLGSPRVSRASSPEG 570
>gi|71852582 aryl hydrocarbon receptor nuclear translocator-like
isoform b [Homo sapiens]
Length = 582
Score = 27.7 bits (60), Expect = 2.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 17 CSSSLTRRSYCALRSSAIRRSWAP 40
CS R+S+C + S+ +SW P
Sbjct: 226 CSKKKDRKSFCTIHSTGYLKSWPP 249
>gi|71852580 aryl hydrocarbon receptor nuclear translocator-like
isoform a [Homo sapiens]
Length = 625
Score = 27.7 bits (60), Expect = 2.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 17 CSSSLTRRSYCALRSSAIRRSWAP 40
CS R+S+C + S+ +SW P
Sbjct: 269 CSKKKDRKSFCTIHSTGYLKSWPP 292
>gi|42716311 aryl hydrocarbon receptor nuclear translocator-like
isoform a [Homo sapiens]
Length = 625
Score = 27.7 bits (60), Expect = 2.0
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 17 CSSSLTRRSYCALRSSAIRRSWAP 40
CS R+S+C + S+ +SW P
Sbjct: 269 CSKKKDRKSFCTIHSTGYLKSWPP 292
>gi|239756124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 348
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 11/61 (18%)
Query: 10 GEGRCRCCSSSLTRRSYCALRSSAIRRSWAPISRAHCSSSPRTPGAAWVGPPARAPGALG 69
G G C CC S+ CA R++ + A S P+ P A GP A A A
Sbjct: 195 GGGSCSCCRWSMAGPFPCARRATCL---------ASLSPPPKLPTAP--GPRAAAAAATA 243
Query: 70 T 70
T
Sbjct: 244 T 244
>gi|239751466 PREDICTED: hypothetical protein XP_002347845 [Homo
sapiens]
Length = 80
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 41 ISRAHCSSSPRTPGAAWVGPPARAPGALGTGD 72
+ R H + PG VGP A PGA G D
Sbjct: 9 LQRKHVTKHLPVPGPISVGPQAAPPGATGHAD 40
>gi|239746217 PREDICTED: zinc finger protein 66 [Homo sapiens]
Length = 1114
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 36 RSWAPISRAHC--SSSPRTPGAAWVGP------PARAPGALGT 70
RSW+ S HC SSSPR P + + P A+ PG G+
Sbjct: 47 RSWSSRSSVHCSLSSSPRGPASVALCPAGIGRSTAKTPGPPGS 89
>gi|239745773 PREDICTED: hypothetical protein XP_002343550 [Homo
sapiens]
Length = 323
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 36 RSWAPISRAHCSSSPRTPGAAWVGPPARAP---GALGTGDSRC 75
R WAP SR S P +P A A P GA GD+ C
Sbjct: 95 RGWAPGSRRGARSLPASPLGAQARAAACVPGKGGAASRGDTPC 137
>gi|239745771 PREDICTED: hypothetical protein XP_002343549 [Homo
sapiens]
Length = 323
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 36 RSWAPISRAHCSSSPRTPGAAWVGPPARAP---GALGTGDSRC 75
R WAP SR S P +P A A P GA GD+ C
Sbjct: 95 RGWAPGSRRGARSLPASPLGAQARAAACVPGKGGAASRGDTPC 137
>gi|239745769 PREDICTED: hypothetical protein XP_002343548 [Homo
sapiens]
Length = 323
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 36 RSWAPISRAHCSSSPRTPGAAWVGPPARAP---GALGTGDSRC 75
R WAP SR S P +P A A P GA GD+ C
Sbjct: 95 RGWAPGSRRGARSLPASPLGAQARAAACVPGKGGAASRGDTPC 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.128 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,172,972
Number of Sequences: 37866
Number of extensions: 187801
Number of successful extensions: 1093
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 1039
Number of HSP's gapped (non-prelim): 110
length of query: 83
length of database: 18,247,518
effective HSP length: 55
effective length of query: 28
effective length of database: 16,164,888
effective search space: 452616864
effective search space used: 452616864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.