Guide to the Human Genome
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Name: LOC100293219 Sequence: fasta or formatted (194aa) NCBI GI: 239757320
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         18           2
 C cysteine            3.6          7           2
 D aspartate           0.5          1           1
 E glutamate           5.2         10           1
 F phenylalanine       2.1          4           1
 G glycine             9.8         19           3
 H histidine           3.1          6           1
 I isoleucine          3.1          6           1
 K lysine              5.7         11           2
 L leucine             7.7         15           2
 M methionine          3.1          6           1
 N asparagine          3.1          6           1
 P proline            10.8         21           2
 Q glutamine           5.2         10           2
 R arginine            6.2         12           2
 S serine              8.8         17           2
 T threonine           6.2         12           1
 V valine              3.6          7           1
 W tryptophan          2.1          4           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287237          1.000   PREDICTED: hypothetical protein 
LOC100287237          1.000   PREDICTED: hypothetical protein XP_002343694 
KLF14                 0.018   Kruppel-like factor 14 
KNDC1                 0.018   kinase non-catalytic C-lobe domain (KIND) containin...
AHDC1                 0.018   AT hook, DNA binding motif, containing 1 
PRSS36                0.018   protease, serine, 36 
WNK1                  0.016   WNK lysine deficient protein kinase 1 
MLL3                  0.013   myeloid/lymphoid or mixed-lineage leukemia 3 
LOC65998              0.013   hypothetical protein LOC65998 
ZXDC                  0.013   ZXD family zinc finger C isoform 2 
ZXDC                  0.013   ZXD family zinc finger C isoform 1 
LOC441617             0.010   PREDICTED: similar to hCG1820409 
LOC441617             0.010   PREDICTED: similar to hCG1820409 
TRIM55                0.010   tripartite motif-containing 55 isoform 1 
RSBN1L                0.010   round spermatid basic protein 1-like 
MUPCDH                0.010   mucin and cadherin-like isoform 1 
SH2D3A                0.010   SH2 domain containing 3A 
VWDE                  0.008   von Willebrand factor D and EGF domains 
LOC100291630          0.008   PREDICTED: hypothetical protein XP_002345522 
LOC100293252          0.008   PREDICTED: hypothetical protein 
LOC100287269          0.008   PREDICTED: hypothetical protein 
LOC100287269          0.008   PREDICTED: hypothetical protein XP_002343695 
C17orf90              0.008   hypothetical protein LOC339229 
LOC100293404          0.008   PREDICTED: hypothetical protein 
LOC100291131          0.008   PREDICTED: hypothetical protein XP_002346641 
BLNK                  0.008   B-cell linker isoform 2 
BLNK                  0.008   B-cell linker isoform 1 
BAG3                  0.008   BCL2-associated athanogene 3 
C2orf85               0.008   hypothetical protein LOC285093 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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