Guide to the Human Genome
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Name: LOC100287269 Sequence: fasta or formatted (83aa) NCBI GI: 239751829
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {83aa} PREDICTED: hypothetical protein XP_002343695
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         10           2
 C cysteine            8.4          7           2
 D aspartate           1.2          1           1
 E glutamate           3.6          3           1
 F phenylalanine       0.0          0           0
 G glycine             9.6          8           1
 H histidine           1.2          1           1
 I isoleucine          2.4          2           1
 K lysine              0.0          0           0
 L leucine             6.0          5           1
 M methionine          2.4          2           2
 N asparagine          0.0          0           0
 P proline             7.2          6           2
 Q glutamine           1.2          1           1
 R arginine           15.7         13           2
 S serine             18.1         15           3
 T threonine           4.8          4           1
 V valine              1.2          1           1
 W tryptophan          2.4          2           1
 Y tyrosine            2.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100293252          1.000   PREDICTED: hypothetical protein 
LOC100287269          1.000   PREDICTED: hypothetical protein XP_002343695 
C1orf68               0.053   skin-specific protein 32 
CUX2                  0.046   cut-like 2 
PER1                  0.039   period 1 
SPHK1                 0.033   sphingosine kinase 1 isoform 2 
NAF1                  0.033   nuclear assembly factor 1 homolog isoform b 
NAF1                  0.033   nuclear assembly factor 1 homolog isoform a 
TMEM70                0.026   transmembrane protein 70 isoform b 
TMEM70                0.026   transmembrane protein 70 isoform a 
LOC652586             0.020   PREDICTED: similar to facioscapulohumeral muscular ...
LOC100293219          0.020   PREDICTED: hypothetical protein 
LOC100287237          0.020   PREDICTED: hypothetical protein 
LOC100287237          0.020   PREDICTED: hypothetical protein XP_002343694 
ENDOG                 0.020   endonuclease G precursor 
KDM6B                 0.020   lysine (K)-specific demethylase 6B 
FARP2                 0.020   FERM, RhoGEF and pleckstrin domain protein 2 
LOC388199             0.020   hypothetical protein LOC388199 
PLEKHA4               0.020   pleckstrin homology domain containing family A memb...
PLEKHA4               0.020   pleckstrin homology domain containing family A memb...
ARNTL                 0.020   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.020   aryl hydrocarbon receptor nuclear translocator-like ...
ARNTL                 0.020   aryl hydrocarbon receptor nuclear translocator-like ...
LOC100292541          0.020   PREDICTED: hypothetical protein 
LOC100291048          0.020   PREDICTED: hypothetical protein XP_002347845 
ZNF66                 0.020   PREDICTED: zinc finger protein 66 
LOC100287450          0.020   PREDICTED: hypothetical protein XP_002343550 
LOC100287417          0.020   PREDICTED: hypothetical protein XP_002343549 
LOC100287374          0.020   PREDICTED: hypothetical protein XP_002343548 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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