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Search of human proteins with 239751407
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
sapiens]
(490 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo ... 1013 0.0
gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo ... 933 0.0
gi|239756916 PREDICTED: hypothetical protein [Homo sapiens] 772 0.0
gi|169183786 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|169179717 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|169180121 PREDICTED: hypothetical protein [Homo sapiens] 41 0.002
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 40 0.006
gi|148536864 SWI/SNF-related matrix-associated actin-dependent r... 39 0.011
gi|32307166 Rho guanine exchange factor 15 [Homo sapiens] 39 0.011
gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo sapi... 39 0.014
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 38 0.018
gi|29029597 glutamate receptor KA2 precursor [Homo sapiens] 37 0.031
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 37 0.041
gi|153285461 fibroblast growth factor 2 [Homo sapiens] 37 0.041
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.041
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 37 0.041
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 37 0.053
gi|40018612 MyoD family inhibitor domain containing protein isof... 37 0.053
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 36 0.070
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 36 0.070
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 36 0.070
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 36 0.070
gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo ... 36 0.091
gi|50428940 mediator complex subunit 25 [Homo sapiens] 36 0.091
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 36 0.091
gi|19263349 Cbp/p300-interacting transactivator, with Glu/Asp-ri... 36 0.091
gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens] 36 0.091
gi|145309328 papilin [Homo sapiens] 36 0.091
>gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
sapiens]
Length = 490
Score = 1013 bits (2619), Expect = 0.0
Identities = 490/490 (100%), Positives = 490/490 (100%)
Query: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS
Sbjct: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
Query: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPSNQYQPRPGLPVQAAGCAGARC 120
LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPSNQYQPRPGLPVQAAGCAGARC
Sbjct: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPSNQYQPRPGLPVQAAGCAGARC 120
Query: 121 PQGWLKSGKGPGPPEARAGIRPRLTVDVGLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEV 180
PQGWLKSGKGPGPPEARAGIRPRLTVDVGLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEV
Sbjct: 121 PQGWLKSGKGPGPPEARAGIRPRLTVDVGLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEV 180
Query: 181 KLVAAHQPPSRNTAPAPTAPTALTLDGAEAPALVFAVVLGGGTPQVTILAARAGAAVEPL 240
KLVAAHQPPSRNTAPAPTAPTALTLDGAEAPALVFAVVLGGGTPQVTILAARAGAAVEPL
Sbjct: 181 KLVAAHQPPSRNTAPAPTAPTALTLDGAEAPALVFAVVLGGGTPQVTILAARAGAAVEPL 240
Query: 241 VVIFEGDGARLSVGVSLDGVDLCRGWTGARPLASGHQRLPSPSTLRRNPLKPRVLGVHRD 300
VVIFEGDGARLSVGVSLDGVDLCRGWTGARPLASGHQRLPSPSTLRRNPLKPRVLGVHRD
Sbjct: 241 VVIFEGDGARLSVGVSLDGVDLCRGWTGARPLASGHQRLPSPSTLRRNPLKPRVLGVHRD 300
Query: 301 QQMRHWPLRVWSPRSRVPGLDMLLVRAPRSKDSWSPSVRQCQRRFSASRSHSYMPREAVV 360
QQMRHWPLRVWSPRSRVPGLDMLLVRAPRSKDSWSPSVRQCQRRFSASRSHSYMPREAVV
Sbjct: 301 QQMRHWPLRVWSPRSRVPGLDMLLVRAPRSKDSWSPSVRQCQRRFSASRSHSYMPREAVV 360
Query: 361 LVPGQPVPRHCMVPRLNSRFRETHFQRWAGRLVLQAGVTLTCPPWASRQPCSPWLKMRKT 420
LVPGQPVPRHCMVPRLNSRFRETHFQRWAGRLVLQAGVTLTCPPWASRQPCSPWLKMRKT
Sbjct: 361 LVPGQPVPRHCMVPRLNSRFRETHFQRWAGRLVLQAGVTLTCPPWASRQPCSPWLKMRKT 420
Query: 421 LAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRTGA 480
LAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRTGA
Sbjct: 421 LAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRTGA 480
Query: 481 TRCGSPEAGL 490
TRCGSPEAGL
Sbjct: 481 TRCGSPEAGL 490
>gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo
sapiens]
Length = 522
Score = 933 bits (2412), Expect = 0.0
Identities = 466/522 (89%), Positives = 469/522 (89%), Gaps = 32/522 (6%)
Query: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS
Sbjct: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
Query: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPSNQYQPRPGLPVQAAGCAGARC 120
LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLP + P G A
Sbjct: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
Query: 121 PQGW--------------------------------LKSGKGPGPPEARAGIRPRLTVDV 148
PQ ++ GKGPGPPEARAGIRPRLTVDV
Sbjct: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELGKGPGPPEARAGIRPRLTVDV 180
Query: 149 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA 208
GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA
Sbjct: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA 240
Query: 209 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG 268
EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG
Sbjct: 241 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG 300
Query: 269 ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP 328
ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP
Sbjct: 301 ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP 360
Query: 329 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 388
RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW
Sbjct: 361 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 420
Query: 389 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 448
AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA
Sbjct: 421 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 480
Query: 449 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 490
AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL
Sbjct: 481 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 522
>gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 772 bits (1993), Expect = 0.0
Identities = 409/522 (78%), Positives = 410/522 (78%), Gaps = 90/522 (17%)
Query: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS
Sbjct: 1 MLQSRFCQPPEDSVRITPQFSSLGLSGWSVGRAGRQHPRREKLTPWLPGPCSEPPTSLCS 60
Query: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPSNQYQPRPGLPVQAAGCAGARC 120
LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLP + P G A
Sbjct: 61 LGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPRGHEERSPWEAKSPRGPYAALR 120
Query: 121 PQ-------------GWL----------KSGK---------GPGPPEARAGIRPRLTVDV 148
PQ G L KS K GPGPPEARAGIRPRLTVDV
Sbjct: 121 PQPCASPLSQLRYLRGELSDHCQPPLVSKSFKPIHRVELYPGPGPPEARAGIRPRLTVDV 180
Query: 149 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGA 208
GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAA LTLDGA
Sbjct: 181 GLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAA---------------VTLTLDGA 225
Query: 209 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTG 268
EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDG
Sbjct: 226 EAPALVFAVVLGGGTPQVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDG--------- 276
Query: 269 ARPLASGHQRLPSPSTLRRNPLKPRVLGVHRDQQMRHWPLRVWSPRSRVPGLDMLLVRAP 328
MRHWPLRVWSPRSRVPGLDMLLVRAP
Sbjct: 277 ----------------------------------MRHWPLRVWSPRSRVPGLDMLLVRAP 302
Query: 329 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 388
RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW
Sbjct: 303 RSKDSWSPSVRQCQRRFSASRSHSYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRW 362
Query: 389 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 448
AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA
Sbjct: 363 AGRLVLQAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSA 422
Query: 449 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 490
AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL
Sbjct: 423 AGDEARARGPAGRAPSPSAALSGRGDRGRTGATRCGSPEAGL 464
>gi|169183786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 395 QAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEAR 454
+ G+ P S SPWL R+ GRRP G G G G R G A A
Sbjct: 9 RGGILSWRAPQRSPGSLSPWLLGRR-------GRRPWGSSRGLGGGDRWLGMEEAKPRAF 61
Query: 455 ARGPAGRAPSPSAALSGRGDRGRTGATRCG 484
+ PAG +PS A DR R CG
Sbjct: 62 SPAPAGDFQAPSTA-----DRARARGRWCG 86
>gi|169179717 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 395 QAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEAR 454
+ G+ P S SPWL R+ GRRP G G G G R G A A
Sbjct: 9 RGGILSWRAPQRSPGSLSPWLLGRR-------GRRPWGSSRGLGGGDRWLGMEEAKPRAF 61
Query: 455 ARGPAGRAPSPSAALSGRGDRGRTGATRCG 484
+ PAG +PS A DR R CG
Sbjct: 62 SPAPAGDFQAPSTA-----DRARARGRWCG 86
>gi|169180121 PREDICTED: hypothetical protein [Homo sapiens]
Length = 152
Score = 41.2 bits (95), Expect = 0.002
Identities = 31/90 (34%), Positives = 36/90 (40%), Gaps = 12/90 (13%)
Query: 395 QAGVTLTCPPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEAR 454
+ G+ P S SPWL R+ GRRP G G G G R G A A
Sbjct: 9 RGGILSWRAPQRSPGSLSPWLLGRR-------GRRPWGSSRGLGGGDRWLGMEEAKPRAF 61
Query: 455 ARGPAGRAPSPSAALSGRGDRGRTGATRCG 484
+ PAG +PS A DR R CG
Sbjct: 62 SPAPAGDFQAPSTA-----DRARARGRWCG 86
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 39.7 bits (91), Expect = 0.006
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 17/151 (11%)
Query: 336 PSVRQCQRRFSASRSH---SYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRL 392
P V +C + + R PR V+ P+PR ++P S R GR
Sbjct: 3 PQVEKCHKAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGR- 61
Query: 393 VLQAGVTLTCPPWASRQPCSPWLKMRKTLAPY----PGGRRPQGRRDGRGAGTRGAGRSA 448
GVT W SRQP L L P GG R+G G G +
Sbjct: 62 ----GVTPRA-SW-SRQPAGGPLSSEGHLLPLVQRDGGGLAEHRGREGEEGVRAGGGGTG 115
Query: 449 AGDEARARGPAGRAPSPSAALSGRGDRGRTG 479
E R G GR P AA++G G G
Sbjct: 116 ---EVRGGGSPGRQPVGRAAVTGEAGAGAAG 143
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 39.7 bits (91), Expect = 0.006
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 17/151 (11%)
Query: 336 PSVRQCQRRFSASRSH---SYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRL 392
P V +C + + R PR V+ P+PR ++P S R GR
Sbjct: 3 PQVEKCHKAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGR- 61
Query: 393 VLQAGVTLTCPPWASRQPCSPWLKMRKTLAPY----PGGRRPQGRRDGRGAGTRGAGRSA 448
GVT W SRQP L L P GG R+G G G +
Sbjct: 62 ----GVTPRA-SW-SRQPAGGPLSSEGHLLPLVQRDGGGLAEHRGREGEEGVRAGGGGTG 115
Query: 449 AGDEARARGPAGRAPSPSAALSGRGDRGRTG 479
E R G GR P AA++G G G
Sbjct: 116 ---EVRGGGSPGRQPVGRAAVTGEAGAGAAG 143
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 39.7 bits (91), Expect = 0.006
Identities = 43/151 (28%), Positives = 54/151 (35%), Gaps = 17/151 (11%)
Query: 336 PSVRQCQRRFSASRSH---SYMPREAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRL 392
P V +C + + R PR V+ P+PR ++P S R GR
Sbjct: 3 PQVEKCHKAGNEERDQVLADARPRRCCVVEAPGPMPRGWILPGARSEERGARLAESRGR- 61
Query: 393 VLQAGVTLTCPPWASRQPCSPWLKMRKTLAPY----PGGRRPQGRRDGRGAGTRGAGRSA 448
GVT W SRQP L L P GG R+G G G +
Sbjct: 62 ----GVTPRA-SW-SRQPAGGPLSSEGHLLPLVQRDGGGLAEHRGREGEEGVRAGGGGTG 115
Query: 449 AGDEARARGPAGRAPSPSAALSGRGDRGRTG 479
E R G GR P AA++G G G
Sbjct: 116 ---EVRGGGSPGRQPVGRAAVTGEAGAGAAG 143
>gi|148536864 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin d2 isoform 1 [Homo sapiens]
Length = 531
Score = 38.9 bits (89), Expect = 0.011
Identities = 47/160 (29%), Positives = 63/160 (39%), Gaps = 35/160 (21%)
Query: 47 LPGPCSEPPTSLCSLGSLSQFGKPGAQLQLRPRPRGPPRFLTWVHVALNLLPSNQYQPRP 106
LPGP P G G PGA RP GP P+ QYQ RP
Sbjct: 37 LPGPALRGP------GPAGGVGGPGAAAF---RPMGPAG------------PAAQYQ-RP 74
Query: 107 GLPVQAAGCAGARCPQGWLKSGKGPGPP-EARAGIRPRLTVDVGLLVDLRDAQQIRTLLL 165
G+ G R P L+ G G P A A +RP G+ + D + R L+
Sbjct: 75 GMS------PGNRMPMAGLQVGPPAGSPFGAAAPLRP------GMPPTMMDPFRKRLLVP 122
Query: 166 AAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTL 205
A P +P ++RGL+ + +A P R P + + L
Sbjct: 123 QAQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDL 162
>gi|32307166 Rho guanine exchange factor 15 [Homo sapiens]
Length = 841
Score = 38.9 bits (89), Expect = 0.011
Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 403 PPWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRA 462
PP S PC+P L M LA G G R AGR G E RA+
Sbjct: 120 PPKPSGSPCTPLLPMAGVLA-------QNGSASAPGTVRRLAGRFEGGAEGRAQDADAPE 172
Query: 463 PSPSAALSGRGDRGR----TGATRCGSPEAGL 490
P A G+R +G+ G+P+AGL
Sbjct: 173 PGLQARADVNGEREAPLTGSGSQENGAPDAGL 204
>gi|169184624 PREDICTED: similar to synaptotagmin XV-b [Homo
sapiens]
Length = 267
Score = 38.5 bits (88), Expect = 0.014
Identities = 50/157 (31%), Positives = 64/157 (40%), Gaps = 15/157 (9%)
Query: 70 PGAQLQLRPRPRGPPRFLTWVHVALNLLPSNQYQPRPGLP--VQAAGCAGARCPQGWLKS 127
PGA+ + RP G P+F T + +A P ++P P L ++ G G C
Sbjct: 65 PGAEGS-QTRPSGAPQFTTLLALAAGS-PWRPWRPGPALAGALRFPGAHGRLCAPP--PP 120
Query: 128 GKGPGPPEARAGIRPRLTVDVGLLVDLR-DAQQIRTLLLAAGP-GLPPRQRG-LEVKLVA 184
G G G A AG+RPR + L R A Q+ T P P RG L L A
Sbjct: 121 GLGLGQGRAGAGLRPRGAGSLPLPCTARLPAPQLGTSSTTDRPCARPTAPRGALRDGLAA 180
Query: 185 AHQPPSRNTAPAPTAPTALTLDGAEAPALVFAVVLGG 221
QP P P P + AE ALV +GG
Sbjct: 181 QPQP------PRPARPACGSSPMAEQLALVIGGTIGG 211
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 38.1 bits (87), Expect = 0.018
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 404 PWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 463
P A QP +P + + + P +RP+G GR A + GA AG A+AR R P
Sbjct: 127 PAAPAQPPAPRPESQLSDRPQSWEQRPRG--PGRSARSAGAAAPPAGGLAQARQARRRRP 184
Query: 464 SPSAALSGR 472
+AAL+GR
Sbjct: 185 RAAAALTGR 193
>gi|29029597 glutamate receptor KA2 precursor [Homo sapiens]
Length = 980
Score = 37.4 bits (85), Expect = 0.031
Identities = 40/127 (31%), Positives = 46/127 (36%), Gaps = 14/127 (11%)
Query: 77 RPRPRGPPRFLTWVHVALNLLPSNQYQPRPGLPVQAAGCAGARCPQGWLKSGKGPGPPEA 136
R RP GP R L + + SN G A G PQ L PGPP
Sbjct: 864 RRRPGGPSRALLSLRAVREMRLSNGKLYSAGAGGDAGSAHGG--PQRLLDD---PGPPSG 918
Query: 137 RAGIRPRLTVDVGLLVDLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPA 196
P V + + R Q +R A+G G PP RGL V A P R P
Sbjct: 919 ARPAAPTPCTHVRVCQECRRIQALR----ASGAGAPP--RGLGVPAEATSPPRPR---PG 969
Query: 197 PTAPTAL 203
P P L
Sbjct: 970 PAGPREL 976
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 37.0 bits (84), Expect = 0.041
Identities = 42/150 (28%), Positives = 54/150 (36%), Gaps = 35/150 (23%)
Query: 54 PPTSLCSLGSLSQFGKPGAQLQL------RPRPRGPPRFLTWVHVALNLLPSNQYQPRPG 107
PP+S S Q G+P +L L P PPR QP P
Sbjct: 962 PPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPR-----------------QPEP- 1003
Query: 108 LPVQAAGCAGARCPQGWL------KSGKGPGPPEARAGIRPRLTVDVGLLVDLRDAQQIR 161
P AG +G P G+ G PGPP PR + G L+ L A
Sbjct: 1004 -PSLVAGASGGASPVGFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLL-LPPASSPP 1061
Query: 162 TLLLAAGPGLPPRQRG---LEVKLVAAHQP 188
+ G PP G ++KL++A QP
Sbjct: 1062 PPQVPQRRGTPPLTPGRLTQDLKLISASQP 1091
>gi|153285461 fibroblast growth factor 2 [Homo sapiens]
Length = 288
Score = 37.0 bits (84), Expect = 0.041
Identities = 28/73 (38%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 416 KMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDR 475
+ R +P GRR + R G G RG GR+ G RG GRAP + GRG R
Sbjct: 56 RSRAAGSPRTRGRRTEERPSGSRLGDRGRGRALPGGRLGGRG-RGRAPE---RVGGRG-R 110
Query: 476 GRTGATRCGSPEA 488
GR A +P A
Sbjct: 111 GRGTAAPRAAPAA 123
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.0 bits (84), Expect = 0.041
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 404 PWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 463
P A QP +P + + + P ++P+G GR A + GA AG A+AR R P
Sbjct: 127 PAAPAQPPAPRPESQLSDRPQSWEQKPRG--PGRSARSAGAAAPPAGGLAQARQARRRRP 184
Query: 464 SPSAALSGR 472
+AAL+GR
Sbjct: 185 RAAAALTGR 193
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 37.0 bits (84), Expect = 0.041
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 404 PWASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAP 463
P A QP +P + + + P ++P+G GR A + GA AG A+AR R P
Sbjct: 127 PAAPAQPPAPRPESQLSDRPQSWEQKPRG--PGRSARSAGAAAPPAGGLAQARQARRRRP 184
Query: 464 SPSAALSGR 472
+AAL+GR
Sbjct: 185 RAAAALTGR 193
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 36.6 bits (83), Expect = 0.053
Identities = 44/162 (27%), Positives = 53/162 (32%), Gaps = 31/162 (19%)
Query: 50 PCSEPPTSLCSLGSLSQFGKPGAQLQLRPRPRGPPRFLTWV----HVALNLLPSNQYQPR 105
P PP L S + G PG + P PR L W VA P + +P
Sbjct: 827 PVPPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPP 886
Query: 106 PGLPVQAAGCAGARCP-QGWLKSGKGPGPP------EARAGIRPRLTVDVGLLVDLRDAQ 158
Q G R P +G G+GP PP E R G RP +
Sbjct: 887 KEETAQLTGPEAGRKPARGVGSGGQGPPPPRRESRTETRWGPRPGSS------------- 933
Query: 159 QIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAP 200
R + PG PPR+ G K PP P P
Sbjct: 934 --RRGIPPEEPGAPPRRAGPIKK-----PPPPTKVEELPPKP 968
>gi|40018612 MyoD family inhibitor domain containing protein isoform
p40 [Homo sapiens]
Length = 355
Score = 36.6 bits (83), Expect = 0.053
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 419 KTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRT 478
+ LA +PG +R + RR G GA T G G + + + PA +PS R R R
Sbjct: 47 RRLANFPGRKRRRRRRKGLGATTGGCGEAVS-----SLHPAPHSPSSVRPAGRRARRQRR 101
Query: 479 GATRCGSPEAG 489
GA P +G
Sbjct: 102 GAGSAERPMSG 112
Score = 32.3 bits (72), Expect = 1.0
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 422 APY-PGGRRPQG---RRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGR 477
AP+ P RP G RR RGAG+ S AG EA A GP G A +G G G
Sbjct: 82 APHSPSSVRPAGRRARRQRRGAGSAERPMSGAG-EALAPGPVG---PQRVAEAGGGQLGS 137
Query: 478 TGATRC 483
T +C
Sbjct: 138 TAQGKC 143
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 36.2 bits (82), Expect = 0.070
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 430 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 472
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 216 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 258
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 36.2 bits (82), Expect = 0.070
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 430 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 472
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 216 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 258
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 36.2 bits (82), Expect = 0.070
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 430 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 472
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 211 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 253
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 36.2 bits (82), Expect = 0.070
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 430 PQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGR 472
P+ ++ G AG RG GR AA R GR P+P A+ R
Sbjct: 211 PRAKKAGANAGARGQGRGAAAGPERPPHVQGRRPAPRGAVGAR 253
>gi|239752201 PREDICTED: hypothetical protein XP_002348147 [Homo
sapiens]
Length = 935
Score = 35.8 bits (81), Expect = 0.091
Identities = 24/67 (35%), Positives = 28/67 (41%)
Query: 423 PYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAGRAPSPSAALSGRGDRGRTGATR 482
P PG R + R G+ G+G AG E RAR R S RG R R A R
Sbjct: 753 PAPGESRDRARGAGQPGPGSGSGAERAGPERRARDTQTRTRRDKLTDSARGGRARLTAGR 812
Query: 483 CGSPEAG 489
E+G
Sbjct: 813 RVRRESG 819
Score = 30.0 bits (66), Expect = 5.0
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 23/81 (28%)
Query: 428 RRPQGRRDGRGAGTRGAGRSAAG----DEARARGPAGRA-----PSPSAALSGRGD---- 474
RR GRR GA ++GA R AA E+R PA A PSP+AA S RG
Sbjct: 815 RRESGRRRA-GATSQGAIRRAASRARKGESRRPLPANSAGRPALPSPAAARSARGSWGLR 873
Query: 475 ---------RGRTGATRCGSP 486
RG RC +P
Sbjct: 874 ASRPSRAAPRGPPNFQRCPAP 894
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 35.8 bits (81), Expect = 0.091
Identities = 39/134 (29%), Positives = 49/134 (36%), Gaps = 25/134 (18%)
Query: 95 NLLPSNQYQPRPGLPVQAAGCAGARCPQGWLK--SGKGPGPPEARAGIRPRLTVDVGLLV 152
NLL QP+P V A+G G PQG + G GPP A +G P
Sbjct: 581 NLLQLRPPQPQPQGTVGASGATGQPQPQGTAQPPPGAPQGPPGAASGPPPP--------- 631
Query: 153 DLRDAQQIRTLLLAAGPGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGAEAPA 212
+L PG P+ R L + PP T P + L APA
Sbjct: 632 --------GPILRPQNPGANPQLRSLLL------NPPPPQTGVPPPQASLHHLQPPGAPA 677
Query: 213 LVFAVVLGGGTPQV 226
L+ G G PQ+
Sbjct: 678 LLPPPHQGLGQPQL 691
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 35.8 bits (81), Expect = 0.091
Identities = 34/107 (31%), Positives = 37/107 (34%), Gaps = 13/107 (12%)
Query: 29 SVGRAGRQHPRREKLTPWLPGPCSEPPTSLCSLGSLSQFGKPGAQLQLR-PRPRGPPRFL 87
S G G P + P PGP P G+ + G G Q Q P P GPP F
Sbjct: 1112 SAGEKGEPGPPGSEGLPGPPGPAG-PRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGF- 1169
Query: 88 TWVHVALNLLPSNQYQPRPGLPVQAAGCAGARCPQGWLKSGKGPGPP 134
P P P P G G R P G S PGPP
Sbjct: 1170 ----------PGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPP 1206
>gi|19263349 Cbp/p300-interacting transactivator, with Glu/Asp-rich
carboxy-terminal domain, 4 [Homo sapiens]
Length = 184
Score = 35.8 bits (81), Expect = 0.091
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 60 SLGSLSQFGKPGAQLQLRPR--PRGPPRFLTWVHVALNLL-PSNQYQPRPGLPVQAAGCA 116
+L +L + PG LRPR P GPP +A P + +QP P +P AAG A
Sbjct: 28 ALRTLPPYAGPGLDSGLRPRGAPLGPPPPRQPGALAYGAFGPPSSFQPFPAVPPPAAGIA 87
Query: 117 GARCPQGWLKSGKGPGPPEARAG 139
+ P G+ PP A G
Sbjct: 88 HLQ-PVATPYPGRAAAPPNAPGG 109
>gi|56790299 pleckstrin and Sec7 domain containing [Homo sapiens]
Length = 1024
Score = 35.8 bits (81), Expect = 0.091
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 23/105 (21%)
Query: 119 RCPQGWLKSGKGP-GPPEARAGIRPRLTVDVGLLVDLRDAQQIRTLLLAAGPGLPPRQRG 177
RCP+ WL G P PP + G L L AGPG R+ G
Sbjct: 20 RCPRRWLPEGPVPQSPPASMYGSTGSL------------------LRRVAGPGPRGRELG 61
Query: 178 -LEVKLVAAHQPPSRNTAP---APTAPTALTLDGAEAPALVFAVV 218
+ PPS AP AP++PT GA++ ++F V
Sbjct: 62 RVTAPCTPLRGPPSPRVAPSPWAPSSPTGQPPPGAQSSVVIFRFV 106
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 35.8 bits (81), Expect = 0.091
Identities = 36/128 (28%), Positives = 44/128 (34%), Gaps = 25/128 (19%)
Query: 357 EAVVLVPGQPVPRHCMVPRLNSRFRETHFQRWAGRLVLQAGVTLTCPPW----------- 405
E V P P C++P + + WA R A V W
Sbjct: 713 EGCVGQPSHAYPVRCLLPSAHGSCAD-----WAARWYFVASVGQCNRFWYGGCHGNANNF 767
Query: 406 ASRQPCSPWLKMRKTLAPYPGGRRPQGRRDGRGAGTRGAGRSAAGDEARARGPAG----R 461
AS Q C M G RRPQ GR T G G S AG++ ++ G R
Sbjct: 768 ASEQEC-----MSSCQGSLHGPRRPQPGASGRSTHTDGGGSSPAGEQEPSQHRTGAAVQR 822
Query: 462 APSPSAAL 469
P PS L
Sbjct: 823 KPWPSGGL 830
Score = 34.3 bits (77), Expect = 0.26
Identities = 49/187 (26%), Positives = 69/187 (36%), Gaps = 22/187 (11%)
Query: 104 PRPGLPVQAAGCAGARCPQGWLKSGKGPGPPEARAGIRPRLTVDVGLLVDLRDAQQIRTL 163
P+P P Q G AGA P G + S P P R RL + +VD Q+IR
Sbjct: 984 PQPRDPAQDFGQAGAAGPLGAIPSSH-PQPAN-----RLRLDQNQPRVVDASPGQRIRMT 1037
Query: 164 LLAAG---PGLPPRQRGLEVKLVAAHQPPSRNTAPAPTAPTALTLDGAEAPALVFAVVLG 220
A G P + ++ G V S P ++ E V
Sbjct: 1038 CRAEGFPPPAIEWQRDGQPVS--------SPRHQLQPDGSLVISRVAVEDGGFYTCVAFN 1089
Query: 221 GGTP-----QVTILAARAGAAVEPLVVIFEGDGARLSVGVSLDGVDLCRGWTGARPLASG 275
G Q+ +L + + P V + EGD ARL V+ + V++ G A G
Sbjct: 1090 GQDRDQRWVQLRVLGELTISGLPPTVTVPEGDTARLLCVVAGESVNIRWSRNGLPVQADG 1149
Query: 276 HQRLPSP 282
H+ SP
Sbjct: 1150 HRVHQSP 1156
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,196,572
Number of Sequences: 37866
Number of extensions: 1573249
Number of successful extensions: 8649
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 283
Number of HSP's that attempted gapping in prelim test: 7943
Number of HSP's gapped (non-prelim): 911
length of query: 490
length of database: 18,247,518
effective HSP length: 106
effective length of query: 384
effective length of database: 14,233,722
effective search space: 5465749248
effective search space used: 5465749248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.