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Search of human proteins with 239751398
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo
sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756902 PREDICTED: hypothetical protein [Homo sapiens] 249 3e-67
gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo ... 249 3e-67
gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo ... 249 3e-67
gi|40353727 synaptopodin isoform A [Homo sapiens] 39 0.001
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 37 0.003
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 37 0.003
gi|148806908 fibronectin type III domain containing 1 [Homo sapi... 36 0.006
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 36 0.008
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 36 0.008
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo... 36 0.008
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 36 0.008
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.010
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 35 0.010
gi|110832843 TBP-associated factor 4 [Homo sapiens] 35 0.010
gi|4758392 forkhead box D1 [Homo sapiens] 35 0.010
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap... 35 0.013
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 35 0.013
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 35 0.013
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 35 0.013
gi|158303333 synaptopodin isoform B [Homo sapiens] 35 0.013
gi|31543452 PX domain containing serine/threonine kinase [Homo s... 35 0.013
gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens] 35 0.013
gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens] 35 0.013
gi|239753407 PREDICTED: hypothetical protein [Homo sapiens] 35 0.018
gi|102469037 jun D proto-oncogene [Homo sapiens] 34 0.023
gi|239753399 PREDICTED: hypothetical protein [Homo sapiens] 34 0.030
gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo ... 34 0.030
gi|27436957 membrane associated guanylate kinase, WW and PDZ dom... 34 0.030
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 34 0.030
>gi|239756902 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 249 bits (637), Expect = 3e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60
MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP
Sbjct: 1 MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60
Query: 61 GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW
Sbjct: 61 GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
Query: 121 R 121
R
Sbjct: 121 R 121
>gi|239751398 PREDICTED: hypothetical protein XP_002347837 [Homo
sapiens]
Length = 121
Score = 249 bits (637), Expect = 3e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60
MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP
Sbjct: 1 MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60
Query: 61 GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW
Sbjct: 61 GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
Query: 121 R 121
R
Sbjct: 121 R 121
>gi|239745907 PREDICTED: hypothetical protein XP_002343614 [Homo
sapiens]
Length = 121
Score = 249 bits (637), Expect = 3e-67
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60
MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP
Sbjct: 1 MALKYFFSDPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQP 60
Query: 61 GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW
Sbjct: 61 GGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
Query: 121 R 121
R
Sbjct: 121 R 121
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 38.9 bits (89), Expect = 0.001
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 49 INRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAPPPSP-----APAPRRVESSRLPG 102
IN RK S GA PR FS RA P P PPP P +P P R S+ +PG
Sbjct: 762 INAARRKSASP---RSAGAENPRPFSPPRAPPPPPPPPPPPPRMRSPQPARPGSAAVPG 817
Score = 35.0 bits (79), Expect = 0.013
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 19 LTSHDQKRTEVSGATARTAAYT------ASSPSVGAINRKPRKLFSQ-PGGNGGGARAPR 71
+ S DQ+ + + AT T Y+ A PSV +NR R Q PGG R+P
Sbjct: 202 VVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSV--VNRTARPFGIQAPGGTSQMERSPM 259
Query: 72 TFSRARARPAPAPP----PSPAPAPRRVESSRLP 101
R APAP P +P P+R SR P
Sbjct: 260 LERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSP 293
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 25 KRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAP 84
K + + G++A T+ T SS S P+ +SQP N GG +S+ P P P
Sbjct: 631 KNSNIPGSSANTSTPTVSSYS------PPQPSYSQPPYNQGG------YSQGYTAPPPPP 678
Query: 85 PPSPA 89
PP PA
Sbjct: 679 PPPPA 683
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 64 GGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRA 111
G RAP+ + P P PPP P P +R P + NK +
Sbjct: 586 GSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNS 633
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 37.4 bits (85), Expect = 0.003
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 25 KRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAP 84
K + + G++A T+ T SS S P+ +SQP N GG +S+ P P P
Sbjct: 731 KNSNIPGSSANTSTPTVSSYS------PPQPSYSQPPYNQGG------YSQGYTAPPPPP 778
Query: 85 PPSPA 89
PP PA
Sbjct: 779 PPPPA 783
Score = 28.1 bits (61), Expect = 1.6
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 64 GGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRA 111
G RAP+ + P P PPP P P +R P + NK +
Sbjct: 686 GSYNRAPQQQPPPQQPPPPQPPPQQPPPPPSYSPARNPPGASTYNKNS 733
>gi|148806908 fibronectin type III domain containing 1 [Homo sapiens]
Length = 1894
Score = 36.2 bits (82), Expect = 0.006
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 21 SHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPG-GNGGGARAPRTFSRARAR 79
S+D TEV R A+ A + A K +++ S G G GG R+ R + + AR
Sbjct: 1078 SYDDDSTEVEAQDVRAPAHAARAKEAAASLPKHQQVESPTGAGAGGDHRSQRGHAASPAR 1137
Query: 80 PA-PAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQA 119
P+ P P S A RV S PG +KR Q+
Sbjct: 1138 PSRPGGPQSRA----RVPSRAAPGKSEPPSKRPLSSKSQQS 1174
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 59 QPGGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVESSRLPG-CFGSENKRAAP 113
+PG G +R PR SRA ARP PAP P R ++ PG F K AAP
Sbjct: 222 EPGRAEGASREPRLRSRA-ARPPPAPGPGALSRASRSRAAGRPGPGFHGGEKAAAP 276
Score = 27.3 bits (59), Expect = 2.8
Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 59 QPGGNGGGARAPRTFSRARARPAPAPPPSPAPA----PRRVESSRLPGCFGSENKRAAPE 114
Q G GG ++ + A PAP P P+ PA P R E + S R P
Sbjct: 186 QEGSFGGRPKSQPPLPQETAAPAPQPGPTAPPARVREPGRAEGASREPRLRSRAARPPPA 245
Query: 115 NG 116
G
Sbjct: 246 PG 247
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 35.8 bits (81), Expect = 0.008
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 45 SVGAINRKPRKLFSQPGGNGGGARAPRTFSRA---------------RARPAPAPPPSPA 89
+ GA+ RKP ++ G GGA P + RA RA PA P P
Sbjct: 49 AAGAVGRKP---LAERAGGIGGATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPV 105
Query: 90 PAPRRVESSRLPGCFGSENKRAAPE 114
+P R + PG G + R + E
Sbjct: 106 SSPGRASGTTRPGPLGQKGLRISAE 130
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 35.8 bits (81), Expect = 0.008
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 41 ASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARA------RPAPAPPPSPAPAP 92
ASSP+ R+ R GG GGGARAP A + AP PP +P P+P
Sbjct: 14 ASSPAERRSKRRRRS--GGDGGGGGGARAPEGVRAPAAGQPRATKGAPPPPGTPPPSP 69
>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
sapiens]
Length = 623
Score = 35.8 bits (81), Expect = 0.008
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 10 PDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARA 69
P + LC +S ++ + + A AA S PS G PR + Q GA +
Sbjct: 34 PCSLGASLCFSSGEESPPQSLASAAEGAA--TSPPSSGG----PRVVERQWEAGSAGAAS 87
Query: 70 PRTFSRARARPAPAPPPSPAPAPR 93
P + R P P +P+P PR
Sbjct: 88 PEELASPEERACPEEPAAPSPEPR 111
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.8 bits (81), Expect = 0.008
Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 15 SGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTF- 73
SG +S D++ SPS A + PRK + G R+P
Sbjct: 496 SGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSA-SPSPRKRQKETSPRGRRRRSPSPPP 554
Query: 74 SRARARPAPAPPP----SPAPAPRRVESSRLPGCFGSENKRAAP 113
+R R P+PAPPP +P P PRR S P +R +P
Sbjct: 555 TRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSP 598
Score = 27.3 bits (59), Expect = 2.8
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 24 QKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPA 83
++R S + + +++ ++SS S + P++ S P R + S R R P+
Sbjct: 346 RRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKT---RRLSPSASPPRRRHRPS 402
Query: 84 PPPSPAPAPR 93
PP +P P R
Sbjct: 403 PPATPPPKTR 412
Score = 27.3 bits (59), Expect = 2.8
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 43 SPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAP-APPPSPAPAPRRVESSRLP 101
SPS+ + +RK S P + AR+P+ R P P AP S +P P R +S P
Sbjct: 653 SPSLSSKHRKG----SSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSP 708
Score = 25.8 bits (55), Expect = 8.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 69 APRTFSRARARPAPAPPPSPAPAPRRVESSRLP-----GCFGSENKRAAP 113
+P +R P P SP+P PR ++S P G S +R +P
Sbjct: 665 SPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSP 714
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 35.4 bits (80), Expect = 0.010
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 29 VSGATARTAAYTAS-SPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAPPPS 87
+ GAT +A A + S G +R P S+P +G G RAP PA P
Sbjct: 65 IGGATIPESAPRAGPTRSAGTSSRNPA---SRPPASGRGERAP---------PAKNTSPG 112
Query: 88 PAPAPRRVESSRLPGCFGSENKRAAPE 114
P +P R + PG G + R + E
Sbjct: 113 PVSSPGRASGTTRPGPLGQKGLRISAE 139
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 35.4 bits (80), Expect = 0.010
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 29 VSGATARTAAYTAS-SPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAPPPS 87
+ GAT +A A + S G +R P S+P +G G RAP PA P
Sbjct: 65 IGGATIPESAPRAGPTRSAGTSSRNPA---SRPPASGRGERAP---------PAKNTSPG 112
Query: 88 PAPAPRRVESSRLPGCFGSENKRAAPE 114
P +P R + PG G + R + E
Sbjct: 113 PVSSPGRASGTTRPGPLGQKGLRISAE 139
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 35.4 bits (80), Expect = 0.010
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 29 VSGATARTAAYTASSPSVGAINRKPRKLFS--QPGGNGGGARAPRTFSRARARPAPA--- 83
++G+ A ++ A++P+V +N P L +P G + P F A A PAPA
Sbjct: 198 LNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTP-PFVGAAAPPAPAAPS 256
Query: 84 PPPSPAPA 91
PP +PAPA
Sbjct: 257 PPAAPAPA 264
Score = 28.9 bits (63), Expect = 0.97
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 36 TAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAPPPSPAPAP 92
+A A P+ A+ P + P G A ARA P P P P P P P
Sbjct: 133 SAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALA-----ARAGPGPGPGPGPGPGP 184
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 29 VSGATARTAAYTASSPSVGAINRKPRKL---FSQPGGNGGGARAPRTFSRARARPAPAPP 85
VSG+ A A ++P+ GA P ++PGG G P + R PAPP
Sbjct: 63 VSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPP 122
Query: 86 PSPAPAP 92
+ P
Sbjct: 123 AAKLRPP 129
Score = 25.8 bits (55), Expect = 8.2
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 18/69 (26%)
Query: 69 APRTFSRARARPA------PAPPP------------SPAPAPRRVESSRLPGCFGSENKR 110
AP T +R PA PA PP +PAPAP + + G G
Sbjct: 276 APATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAA 335
Query: 111 AAPENGLQA 119
AAP G++A
Sbjct: 336 AAPAPGVKA 344
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 35.4 bits (80), Expect = 0.010
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 37 AAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRVE 96
+A A P A+ R P + S GG+ G A A ++A A +P PSP AP
Sbjct: 345 SAAKAGGPGASALARSPFSIESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPG 404
Query: 97 SS 98
SS
Sbjct: 405 SS 406
>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
sapiens]
Length = 328
Score = 35.0 bits (79), Expect = 0.013
Identities = 30/83 (36%), Positives = 32/83 (38%), Gaps = 20/83 (24%)
Query: 59 QPGGNGGGARA-------PRTFSRARARPAPAP-PPSPA------------PAPRRVESS 98
QPG GG A A PRT R +P PAP PP PA PAP R + S
Sbjct: 141 QPGREGGRAGAESETAPPPRTNKHRRLQPEPAPRPPPPAASFQPGSALQPPPAPPRRDDS 200
Query: 99 RLPGCFGSENKRAAPENGLQAWR 121
C R A L WR
Sbjct: 201 ASLRCSVLPPARRAVAAALGKWR 223
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 34 ARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAP-RTFSRARARPAPAPPPSPAPAP 92
AR+ ASSPS G+ +PR L G+ AR P + + A P P PP+ A P
Sbjct: 1956 ARSGLEPASSPSKGS---EPRPLVPPVSGHATIARTPAKNLAPHHASPDPPAPPASASDP 2012
Query: 93 RRVESSRLP 101
R ++ P
Sbjct: 2013 HREKTQSKP 2021
Score = 27.7 bits (60), Expect = 2.2
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 9 DPDVFASGLCLTSHDQKRTEVSGATARTAAYTASSPS--------VGAINRKPRKLFSQP 60
D ++ ASG+ + ++++ E + AT ++ T S PS G KP
Sbjct: 702 DEEMEASGV--SGNEEEMVEEAEATVNNSSDTESIPSPHTEAAKDTGQNGPKPPATLGAD 759
Query: 61 GGNGGGARAPRTFSRARARPAPAPP----PSPAPAP 92
G G P A P PA P+P PAP
Sbjct: 760 GPPPGPPTPPPEDIPAPTEPTPASEATGAPTPPPAP 795
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 34 ARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAP-RTFSRARARPAPAPPPSPAPAP 92
AR+ ASSPS G+ +PR L G+ AR P + + A P P PP+ A P
Sbjct: 1972 ARSGLEPASSPSKGS---EPRPLVPPVSGHATIARTPAKNLAPHHASPDPPAPPASASDP 2028
Query: 93 RRVESSRLP 101
R ++ P
Sbjct: 2029 HREKTQSKP 2037
Score = 25.8 bits (55), Expect = 8.2
Identities = 27/92 (29%), Positives = 33/92 (35%), Gaps = 13/92 (14%)
Query: 14 ASGLCLTSHDQKRTEVSG-ATARTAAYTASSPS--------VGAINRKPRKLFSQPGGNG 64
A L + ++ R E SG AT ++ T S PS G KP G
Sbjct: 721 AEALHASGNEVPRGECSGPATVNNSSDTESIPSPHTEAAKDTGQNGPKPPATLGADGPPP 780
Query: 65 GGARAPRTFSRARARPAPAPP----PSPAPAP 92
G P A P PA P+P PAP
Sbjct: 781 GPPTPPPEDIPAPTEPTPASEATGAPTPPPAP 812
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/49 (48%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 60 PGGNGGGAR----APRTFSRARAR-PAP-APPPSPAPAPRRVESSRLPG 102
PGG GG APR+ R RAR PAP APP P P+R S +PG
Sbjct: 441 PGGVGGAPLPPPGAPRSCIRIRARFPAPPAPPAPPPRGPKRKLYSAVPG 489
Score = 25.8 bits (55), Expect = 8.2
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 71 RTFSRARARPAPAPPPSPAPAPRRVESSRLPGCFGSENKRAAPENGLQAW 120
R+ S P+P+P PSPA P PG G +R + LQ W
Sbjct: 1644 RSVSARSRSPSPSPLPSPASGPG-------PGAPGP--RRPFQQKPLQLW 1684
>gi|158303333 synaptopodin isoform B [Homo sapiens]
Length = 685
Score = 35.0 bits (79), Expect = 0.013
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 13/94 (13%)
Query: 19 LTSHDQKRTEVSGATARTAAYT------ASSPSVGAINRKPRKLFSQ-PGGNGGGARAPR 71
+ S DQ+ + + AT T Y+ A PSV +NR R Q PGG R+P
Sbjct: 202 VVSADQEMSGRAAATTPTKVYSEVHFTLAKPPSV--VNRTARPFGIQAPGGTSQMERSPM 259
Query: 72 TFSRARARPAPAPP----PSPAPAPRRVESSRLP 101
R APAP P +P P+R SR P
Sbjct: 260 LERRHFGEKAPAPQPPSLPDRSPRPQRHIMSRSP 293
>gi|31543452 PX domain containing serine/threonine kinase [Homo
sapiens]
Length = 578
Score = 35.0 bits (79), Expect = 0.013
Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 19 LTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRARA 78
L KR+ + + +A Y+ S+ S G+ P S P P + S A
Sbjct: 462 LARKKSKRSALENSEEHSAKYSNSNNSAGSGASSPLTSPSSP--------TPPSTSGISA 513
Query: 79 RPAPAPPPSPAPAPRRVESSRLPGCFGSE 107
P P PPP P AP S+ P S+
Sbjct: 514 LPPPPPPPPPPAAPLPPASTEAPAQLSSQ 542
>gi|195963316 PWWP domain containing 2A isoform b [Homo sapiens]
Length = 755
Score = 35.0 bits (79), Expect = 0.013
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 32 ATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRA----------RARPA 81
A A AA TA+SP G ++ PG G P T + A ++ P
Sbjct: 3 AVAAEAAATAASPGEGGAGEAEPEMEPIPGSEAGTDPLPVTATEASVPDGETDGQQSAPQ 62
Query: 82 PAPPPSPAPAPRRVESSRLPGCFGSE 107
PP P P P E +R P G E
Sbjct: 63 ADEPPLPPPPPPPGELARSPEAVGPE 88
Score = 26.9 bits (58), Expect = 3.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 80 PAPAPPPSPAPAPRRVESSRLP 101
P+PA PP PAP E LP
Sbjct: 115 PSPASPPEQPPAPEEREEPPLP 136
>gi|153791982 PWWP domain containing 2A isoform a [Homo sapiens]
Length = 560
Score = 35.0 bits (79), Expect = 0.013
Identities = 26/86 (30%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 32 ATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAPRTFSRA----------RARPA 81
A A AA TA+SP G ++ PG G P T + A ++ P
Sbjct: 3 AVAAEAAATAASPGEGGAGEAEPEMEPIPGSEAGTDPLPVTATEASVPDGETDGQQSAPQ 62
Query: 82 PAPPPSPAPAPRRVESSRLPGCFGSE 107
PP P P P E +R P G E
Sbjct: 63 ADEPPLPPPPPPPGELARSPEAVGPE 88
Score = 26.9 bits (58), Expect = 3.7
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 80 PAPAPPPSPAPAPRRVESSRLP 101
P+PA PP PAP E LP
Sbjct: 115 PSPASPPEQPPAPEEREEPPLP 136
>gi|239753407 PREDICTED: hypothetical protein [Homo sapiens]
Length = 182
Score = 34.7 bits (78), Expect = 0.018
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 30 SGATARTAAYTASSPSVG---AINRKPRKLFSQPGGNGGGARAPRTFSRARARPAP-APP 85
SG++ + +A P++G A+ R+ + GG GG T RAR P P PP
Sbjct: 57 SGSSGGGGSGSAGQPTLGSMLAVGSAARRASERAGGRAGG-----TALRAREPPPPLLPP 111
Query: 86 PS-PAPAPRRVESSR 99
PS P P P+ S R
Sbjct: 112 PSPPQPGPKGPASPR 126
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 34.3 bits (77), Expect = 0.023
Identities = 32/106 (30%), Positives = 38/106 (35%), Gaps = 18/106 (16%)
Query: 8 SDPDVFASGLCLTSHD-QKRTEV-SGATARTAAYTASSPSVGAINRKP------------ 53
S+ FA G D K+ ++ +GA A AA A PS A P
Sbjct: 131 SEEQEFAEGFVKALEDLHKQNQLGAGAAAAAAAAAAGGPSGTATGSAPPGELAPAAAAPE 190
Query: 54 ----RKLFSQPGGNGGGARAPRTFSRARARPAPAPPPSPAPAPRRV 95
L S GG GG A A P P PPP A P R+
Sbjct: 191 APVYANLSSYAGGAGGAGGAATVAFAAEPVPFPPPPPPGALGPPRL 236
>gi|239753399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 165
Score = 33.9 bits (76), Expect = 0.030
Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 17/88 (19%)
Query: 14 ASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAP--- 70
A G + + RT GA A TAA T R+ + GG+GGGARA
Sbjct: 71 AEGAAAAAPRKPRTGRGGAAA-TAAVTRKE-------RETAPARDRGGGDGGGARADGLR 122
Query: 71 ------RTFSRARARPAPAPPPSPAPAP 92
R RA AR P+ P SP P
Sbjct: 123 GRSPRRRPAGRAHARSLPSAPGSPKKIP 150
>gi|239741865 PREDICTED: hypothetical protein XP_002342328 [Homo
sapiens]
Length = 165
Score = 33.9 bits (76), Expect = 0.030
Identities = 30/88 (34%), Positives = 36/88 (40%), Gaps = 17/88 (19%)
Query: 14 ASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPGGNGGGARAP--- 70
A G + + RT GA A TAA T R+ + GG+GGGARA
Sbjct: 71 AEGAAAAAPRKPRTGRGGAAA-TAAVTRKE-------RETAPARDRGGGDGGGARADGLR 122
Query: 71 ------RTFSRARARPAPAPPPSPAPAP 92
R RA AR P+ P SP P
Sbjct: 123 GRSPRRRPAGRAHARSLPSAPGSPKKIP 150
>gi|27436957 membrane associated guanylate kinase, WW and PDZ domain
containing 2 [Homo sapiens]
Length = 1455
Score = 33.9 bits (76), Expect = 0.030
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 57 FSQPGGNGGGARAPRTFSRARARPAPAP-PPSPAPA 91
F+ PGG G GA + ARA P P P PP APA
Sbjct: 1389 FAGPGGGGSGALEAEGRAGARAGPRPGPRPPGGAPA 1424
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 33.9 bits (76), Expect = 0.030
Identities = 31/100 (31%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 11 DVFASGLCLTSHDQKRTEVSGATARTAAYTASSPSVGAINRKPRKLFSQPG--------G 62
D+FA G + +R G T + A SP R P K S P G
Sbjct: 100 DLFAGGFPVLRPAGQRDVAGGKTGQGPGSRAPSP------RLPNKTISGPLIPPASPRLG 153
Query: 63 NG----GGARAPRTFSRARARPAPAPPPSPAPAPRRVESS 98
N G AR A P P PPP P P P + SS
Sbjct: 154 NTSEAHGAARTAPPRPNVPAPPPPTPPPPPPPLPPPLPSS 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,193,676
Number of Sequences: 37866
Number of extensions: 395111
Number of successful extensions: 11006
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 645
Number of HSP's that attempted gapping in prelim test: 6621
Number of HSP's gapped (non-prelim): 3784
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.