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Search of human proteins with 239751337
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751337 PREDICTED: hypothetical protein [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751337 PREDICTED: hypothetical protein [Homo sapiens] 485 e-137
gi|169204821 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|169205432 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|169204105 PREDICTED: hypothetical protein [Homo sapiens] 40 0.001
gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens] 39 0.003
gi|239755589 PREDICTED: hypothetical protein [Homo sapiens] 37 0.011
gi|239755259 PREDICTED: hypothetical protein [Homo sapiens] 37 0.015
gi|239749744 PREDICTED: hypothetical protein XP_002347155 [Homo ... 37 0.015
gi|239743999 PREDICTED: hypothetical protein XP_002343003 [Homo ... 37 0.015
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 37 0.019
gi|169214061 PREDICTED: hypothetical protein [Homo sapiens] 36 0.033
gi|169214437 PREDICTED: hypothetical protein [Homo sapiens] 36 0.033
gi|113416171 PREDICTED: hypothetical protein [Homo sapiens] 36 0.033
gi|169213353 PREDICTED: hypothetical protein [Homo sapiens] 36 0.033
gi|169204510 PREDICTED: hypothetical protein [Homo sapiens] 35 0.043
gi|169205117 PREDICTED: hypothetical protein [Homo sapiens] 35 0.043
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 35 0.043
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 35 0.056
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 35 0.056
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 35 0.056
gi|118498339 EMI domain containing 2 [Homo sapiens] 35 0.056
gi|33286436 gametogenetin [Homo sapiens] 35 0.056
gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 35 0.073
gi|154937344 complement component 1, q subcomponent-like 2 [Homo... 34 0.096
gi|48762934 alpha 2 type I collagen [Homo sapiens] 34 0.13
gi|191252814 RIMS binding protein 3B [Homo sapiens] 34 0.13
gi|191252806 RIMS binding protein 3C [Homo sapiens] 34 0.13
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|153792195 DKFZP434H0735 protein [Homo sapiens] 34 0.13
>gi|239751337 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 485 bits (1248), Expect = e-137
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MQNCGIVLHRSQEPPKTTRAVLSARRGYGDLSPRCGPALLAAAGRSWAGAPGLDHPGVKT 60
MQNCGIVLHRSQEPPKTTRAVLSARRGYGDLSPRCGPALLAAAGRSWAGAPGLDHPGVKT
Sbjct: 1 MQNCGIVLHRSQEPPKTTRAVLSARRGYGDLSPRCGPALLAAAGRSWAGAPGLDHPGVKT 60
Query: 61 VVRGKCAWASLAVCGRELEESGPSSFEESHQVITVKTGASRGLAGSQAKAEPTRPRRPPP 120
VVRGKCAWASLAVCGRELEESGPSSFEESHQVITVKTGASRGLAGSQAKAEPTRPRRPPP
Sbjct: 61 VVRGKCAWASLAVCGRELEESGPSSFEESHQVITVKTGASRGLAGSQAKAEPTRPRRPPP 120
Query: 121 PSRGHREKSGRETAPRGLPPWESQPRPRALPCRRGTGGKPLNLRTLFPQLESRNTNAYLV 180
PSRGHREKSGRETAPRGLPPWESQPRPRALPCRRGTGGKPLNLRTLFPQLESRNTNAYLV
Sbjct: 121 PSRGHREKSGRETAPRGLPPWESQPRPRALPCRRGTGGKPLNLRTLFPQLESRNTNAYLV 180
Query: 181 GWREQKRSRGRDRGSVVCNDPALSPGIKQSFYLSLLGSEKLRLQRVVEKLSALLPE 236
GWREQKRSRGRDRGSVVCNDPALSPGIKQSFYLSLLGSEKLRLQRVVEKLSALLPE
Sbjct: 181 GWREQKRSRGRDRGSVVCNDPALSPGIKQSFYLSLLGSEKLRLQRVVEKLSALLPE 236
>gi|169204821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 102 GLAGSQAKAEPTRPRRPPPPSRGHREKSGRETA--PRGLPPWESQPRPRALPCRRGTGGK 159
GL G+ A A P + P P +GR PR PPW PRP LP R
Sbjct: 59 GLLGAPAPA-PALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPP 117
Query: 160 PLNLRTLFPQLESRNTNAYLVGWREQKRSRGRDRGSVVC 198
P R L LE+++T+ + R + R R C
Sbjct: 118 PAGSRGL---LETQDTSGFASPGRRPRDRRPARRCGCAC 153
>gi|169205432 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 102 GLAGSQAKAEPTRPRRPPPPSRGHREKSGRETA--PRGLPPWESQPRPRALPCRRGTGGK 159
GL G+ A A P + P P +GR PR PPW PRP LP R
Sbjct: 59 GLLGAPAPA-PALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPP 117
Query: 160 PLNLRTLFPQLESRNTNAYLVGWREQKRSRGRDRGSVVC 198
P R L LE+++T+ + R + R R C
Sbjct: 118 PAGSRGL---LETQDTSGFASPGRRPRDRRPARRCGCAC 153
>gi|169204105 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 40.4 bits (93), Expect = 0.001
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 6/99 (6%)
Query: 102 GLAGSQAKAEPTRPRRPPPPSRGHREKSGRETA--PRGLPPWESQPRPRALPCRRGTGGK 159
GL G+ A A P + P P +GR PR PPW PRP LP R
Sbjct: 59 GLLGAPAPA-PALTQHPSLPQGAGALPAGRRRPDRPRPAPPWPLSPRPSHLPSRVSAAPP 117
Query: 160 PLNLRTLFPQLESRNTNAYLVGWREQKRSRGRDRGSVVC 198
P R L LE+++T+ + R + R R C
Sbjct: 118 PAGSRGL---LETQDTSGFASPGRRPRDRRPARRCGCAC 153
>gi|45935385 SAM and SH3 domain containing 1 [Homo sapiens]
Length = 1247
Score = 39.3 bits (90), Expect = 0.003
Identities = 47/171 (27%), Positives = 67/171 (39%), Gaps = 34/171 (19%)
Query: 10 RSQEPPKTTRAVLS---ARRGYGDLSPRCGPALLAAAGRSW-AGAPGLDHPGVKTVVRGK 65
R EP K T L A G G P+C P R++ A PG H +T + G
Sbjct: 899 RFSEPQKLTTKKLEGSIAASGRGLSPPQCLP-------RNYDAQPPGAKHGLARTPLEGH 951
Query: 66 CAWASLAVCGRELEESGPSSFEESHQVITVKTGASRGLAGSQAKAEPTRPRRPPP-PSRG 124
G E FE +H + K G ++ + +P P +PPP P++
Sbjct: 952 RK-------GHE--------FEGTHHPLGTKEGVD-----AEQRMQPKIPSQPPPVPAKK 991
Query: 125 HREKSGRETAPRGLPPWESQPRPRA--LPCRRGTGGKPLNLRTLFPQLESR 173
RE+ P + P + P P A LP +RG+ P + P L R
Sbjct: 992 SRERLANGLHPVPMGPSGALPSPDAPCLPVKRGSPASPTSPSDCPPALAPR 1042
>gi|239755589 PREDICTED: hypothetical protein [Homo sapiens]
Length = 356
Score = 37.4 bits (85), Expect = 0.011
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 76 RELEESGPSSFEESHQVITVKTGASRGLAGSQAKAEPTRPRRPPPPSRGHREKSGRETAP 135
R L S P F H I+ G G A + P P PPPP G + RE +
Sbjct: 151 RSLLHSSPRWFSSRHSSISEGEGDRCGFAEPPGGSSPPAPPLPPPPKPGSPTQRAREAS- 209
Query: 136 RGLPPWESQPRPRALPCRRGTGGKPLNLR 164
W+ P RGT +PL R
Sbjct: 210 ----SWKPPGHSHTAPPGRGT-QRPLTQR 233
>gi|239755259 PREDICTED: hypothetical protein [Homo sapiens]
Length = 203
Score = 37.0 bits (84), Expect = 0.015
Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 98 GASRGLAGSQAKAEPTRPRRPPPPSRGHREKSGRETAPR--GLPPWESQPR-PRAL-PCR 153
GA RG +G + P RPR P HR S R+ AP+ G+ P S R P AL PC
Sbjct: 78 GAGRGWSGKGSA--PLRPRSEKQPQVQHRTHSPRKVAPKTMGVQPQASAERTPAALTPCN 135
Query: 154 RGT 156
GT
Sbjct: 136 TGT 138
>gi|239749744 PREDICTED: hypothetical protein XP_002347155 [Homo
sapiens]
Length = 203
Score = 37.0 bits (84), Expect = 0.015
Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 98 GASRGLAGSQAKAEPTRPRRPPPPSRGHREKSGRETAPR--GLPPWESQPR-PRAL-PCR 153
GA RG +G + P RPR P HR S R+ AP+ G+ P S R P AL PC
Sbjct: 78 GAGRGWSGKGSA--PLRPRSEKQPQVQHRTHSPRKVAPKTMGVQPQASAERTPAALTPCN 135
Query: 154 RGT 156
GT
Sbjct: 136 TGT 138
>gi|239743999 PREDICTED: hypothetical protein XP_002343003 [Homo
sapiens]
Length = 203
Score = 37.0 bits (84), Expect = 0.015
Identities = 27/63 (42%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 98 GASRGLAGSQAKAEPTRPRRPPPPSRGHREKSGRETAPR--GLPPWESQPR-PRAL-PCR 153
GA RG +G + P RPR P HR S R+ AP+ G+ P S R P AL PC
Sbjct: 78 GAGRGWSGKGSA--PLRPRSEKQPQVQHRTHSPRKVAPKTMGVQPQASAERTPAALTPCN 135
Query: 154 RGT 156
GT
Sbjct: 136 TGT 138
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 36.6 bits (83), Expect = 0.019
Identities = 39/140 (27%), Positives = 50/140 (35%), Gaps = 8/140 (5%)
Query: 32 SPRCGPALLAAAGRSWAGAPGLDHPGVKTVVRGKCAWASLAVCGRELEESGPSSFEESHQ 91
+PR PA AAA AP V + A+ A GP+ Q
Sbjct: 114 APRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAP-PSPGPAQPGPRAQ 172
Query: 92 VITVKTGASRGLAGSQAKAEPTRPRRPPPPSRGHRE----KSGRETAP---RGLPPWESQ 144
A A A P PRR PPP+ RE + AP + PP + Q
Sbjct: 173 RAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQ 232
Query: 145 PRPRALPCRRGTGGKPLNLR 164
P P R G +P++LR
Sbjct: 233 PPPEGGAVRAGGAARPVSLR 252
>gi|169214061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 35.8 bits (81), Expect = 0.033
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 23/121 (19%)
Query: 108 AKAEPTRPRRPPPPSRGHREKSGRE-----TAPRGLPPW--------ESQPRPRALPCRR 154
+ + PTRPRR SR H + R RGLP W E +PR RR
Sbjct: 78 SSSRPTRPRRCKSSSRPHLARGRRSPLKAAQQDRGLPAWGVWLLSRAEVRPRSALGSSRR 137
Query: 155 GTGGKPLNLRTLFPQLESRNTNAYLVG---------WREQKRSRGRDRGSVVCN-DPALS 204
G G K R ++R T W E +R R R G+ P L+
Sbjct: 138 GLGDKGPRSRRAAEFTQARPTRKRRTPGGGRPEAGCWLENRRQRRRKAGAERAGAGPTLT 197
Query: 205 P 205
P
Sbjct: 198 P 198
>gi|169214437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 35.8 bits (81), Expect = 0.033
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 23/121 (19%)
Query: 108 AKAEPTRPRRPPPPSRGHREKSGRE-----TAPRGLPPW--------ESQPRPRALPCRR 154
+ + PTRPRR SR H + R RGLP W E +PR RR
Sbjct: 78 SSSRPTRPRRCKSSSRPHLARGRRSPLKAAQQDRGLPAWGVWLLSRAEVRPRSALGSSRR 137
Query: 155 GTGGKPLNLRTLFPQLESRNTNAYLVG---------WREQKRSRGRDRGSVVCN-DPALS 204
G G K R ++R T W E +R R R G+ P L+
Sbjct: 138 GLGDKGPRSRRAAEFTQARPTRKRRTPGGGRPEAGCWLENRRQRRRKAGAERAGAGPTLT 197
Query: 205 P 205
P
Sbjct: 198 P 198
>gi|113416171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 35.8 bits (81), Expect = 0.033
Identities = 47/177 (26%), Positives = 56/177 (31%), Gaps = 21/177 (11%)
Query: 32 SPRC-----GPALLAAAGRSWAGAPGLDHP--GVKTVVRGKCAWASLAVCGRELEESGPS 84
SPRC G A S A APG P G R WA A C R P+
Sbjct: 43 SPRCCRFCKGSVSTATVTSSGASAPGSADPTLGSTAARRASAPWACPAGCCRA-NAPAPA 101
Query: 85 SFEESHQVITVKTGASRGLAGSQAKAEPTRPRRPPPPSRGHREKSGRETAPRGLPPWESQ 144
+ + +A A P RP R P R + T G S
Sbjct: 102 RNPRRKEPRRQSRATGKSARTRRACASPCRPGRHCGPETARRPRPLAGTTFCGGARVLSN 161
Query: 145 PRPRALPCRRGTGGK-------PLNLRTLFPQLESRNTNAYLVGWREQKRSRGRDRG 194
P P G+GG P R L A V W ++RS+G RG
Sbjct: 162 PPPS------GSGGDARPSPLVPRRCRATSASLPQETPFALSVVWAPRRRSQGDARG 212
>gi|169213353 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 35.8 bits (81), Expect = 0.033
Identities = 35/121 (28%), Positives = 44/121 (36%), Gaps = 23/121 (19%)
Query: 108 AKAEPTRPRRPPPPSRGHREKSGRE-----TAPRGLPPW--------ESQPRPRALPCRR 154
+ + PTRPRR SR H + R RGLP W E +PR RR
Sbjct: 78 SSSRPTRPRRCKSSSRPHLARGRRSPLKAAQQDRGLPAWGVWLLSRAEVRPRSALGSSRR 137
Query: 155 GTGGKPLNLRTLFPQLESRNTNAYLVG---------WREQKRSRGRDRGSVVCN-DPALS 204
G G K R ++R T W E +R R R G+ P L+
Sbjct: 138 GLGDKGPRSRRAAEFTQARPTRKRRTPGGGRPEAGCWLENRRQRRRKAGAERAGAGPTLT 197
Query: 205 P 205
P
Sbjct: 198 P 198
>gi|169204510 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 35.4 bits (80), Expect = 0.043
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 46 SWAGAPGLDHPGVKTVVRGKCAWASLAVCGRELEESGPSSFEESHQVITVKTGASRGLAG 105
+W G G P + + R C A+ GREL G + + G SR AG
Sbjct: 66 TWLGGAGGPFPAAQLLPRAACGPAA----GREL---GVARAGRGIPSQVGRDGVSRTTAG 118
Query: 106 SQAKAEPTRPRRPPPPSRGHREKSGRETAPRGL 138
RP RPPPPS G R E PR L
Sbjct: 119 PTPIPRAPRPWRPPPPSPG-RVGVLLEVLPRSL 150
>gi|169205117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 35.4 bits (80), Expect = 0.043
Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 46 SWAGAPGLDHPGVKTVVRGKCAWASLAVCGRELEESGPSSFEESHQVITVKTGASRGLAG 105
+W G G P + + R C A+ GREL G + + G SR AG
Sbjct: 66 TWLGGAGGPFPAAQLLPRAACGPAA----GREL---GVARAGRGIPSQVGRDGVSRTTAG 118
Query: 106 SQAKAEPTRPRRPPPPSRGHREKSGRETAPRGL 138
RP RPPPPS G R E PR L
Sbjct: 119 PTPIPRAPRPWRPPPPSPG-RVGVLLEVLPRSL 150
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 35.4 bits (80), Expect = 0.043
Identities = 54/199 (27%), Positives = 65/199 (32%), Gaps = 35/199 (17%)
Query: 2 QNCGIVLHRSQEPPKTTRAV-LSARRGYGDLSPRCGPALLAAAGR--------------- 45
++C +L S PP T A +SA G R GP A A R
Sbjct: 57 RSCSTLLRSSSAPPAATDAAHMSASTGTEVQMKRVGPKSWAPAPRRQRASSAQVRAARPA 116
Query: 46 SWAGAPGLDHPGVKTVVRGKCAWASLAVCGRELEESGPSSFEES---------HQVITVK 96
A G PG + G + AV R G + F + H +
Sbjct: 117 GMAAGTGRSGPGSARLGLGSGWDPARAVAPRAARALGAALFGRAVHTAALSGPHCRLRCG 176
Query: 97 TGASRGLAGSQAKAEPTRPRRPPPPSRGH--REKSGRETAPRGLPP-------WESQPRP 147
A AG + R R P RG R G +AP GLPP WE PRP
Sbjct: 177 ARAFYAAAGGASSRRRQRGRNPALIVRGPGPRRGGGLTSAPPGLPPLASPPPFWE-LPRP 235
Query: 148 RALPCRRGTGGKPLNLRTL 166
P G P LR L
Sbjct: 236 PPPPPPPGPALLPRRLREL 254
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 35.0 bits (79), Expect = 0.056
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 110 AEPTRPRRPPPPS---RGHREKSGRETAPRGLPPWESQPRPRALPCRRGTGGKP 160
+ P P RPPP + R G E P G P E +PRP ALP R +P
Sbjct: 113 SSPHAPTRPPPQAVQPRPSEPTPGSEALPPGSLP-EGEPRPYALPPRESPAPRP 165
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 35.0 bits (79), Expect = 0.056
Identities = 34/119 (28%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
Query: 36 GPALLA-AAGRSWAGAPGLDHPGVKTVVRGKCAWASLAVCGRELEESGPSSFEESHQVIT 94
GP + A GR W G GL + V + AS + G E+ ++ Q
Sbjct: 102 GPQVAARGGGRGWEGG-GLG--ARRAVTAARRGGASRPLAGEPWREAARRRPQQCPQWGR 158
Query: 95 VKTGASRGLAGSQAKAEPTRPRRPPPPSRGHREKSGRETAPRGLPPWESQPRPRALPCR 153
+ S LA + PT P P R +SGR A G E PR PCR
Sbjct: 159 ARESRSAALASPRVSNAPTTPASRNPGLRAQERQSGRRAAGGGGARAEP---PRVPPCR 214
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 35.0 bits (79), Expect = 0.056
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 99 ASRGLAGSQAKAEPTRP--RRPPPPSRGHREKSGRETAPRGLPPWESQPR--PRALPCRR 154
A R +GS + EP P R P SR GR +P G ES P P++ RR
Sbjct: 1611 APRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARR 1670
Query: 155 GTGGKP 160
G+ P
Sbjct: 1671 GSRSSP 1676
Score = 28.1 bits (61), Expect = 6.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 81 SGPSSFEESHQVITVKTGASRGLAGSQAKAEPTRPRRPPPPSRGHR 126
S SS S + + S G QA +P P++PPP R R
Sbjct: 2631 SSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSR 2676
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 35.0 bits (79), Expect = 0.056
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 102 GLAGSQAKAEPTRPRRPPPPSRGHREKSGRETAPRGLPPWESQPRPRALPCRRGTGGKP 160
G AG + P P PP S+G R ++G E P G P P PR LP G G P
Sbjct: 197 GPAGPPGQTGPPGPAGPPG-SKGDRGQTG-EKGPAGPPGLLGPPGPRGLPGEMGRPGPP 253
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 35.0 bits (79), Expect = 0.056
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 114 RPRRPPPPSRGHREKSGRETAPRG----LPPWESQPRPRALPCRRGTGGKPLNLRTLFPQ 169
RP +PPPP R+ S ++T PR PP E+ P LP R + + P
Sbjct: 140 RPLKPPPPP---RQLSVKDTVPRAPSQFPPPLETWKPPPPLPSERQPADRRITPALATPA 196
Query: 170 LESRNTNAYLVGWREQKRSRGRDRG 194
+ A G R Q ++ GR RG
Sbjct: 197 SPPTESQA---GPRNQGQTAGRARG 218
Score = 30.8 bits (68), Expect = 1.1
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 112 PTRPRRPPPPSRGHREKSGRETAPR----GLPPWESQ--PRPRALPCRRGTGGKP 160
P +PPPP R+ + R P PP ESQ PR + R GG P
Sbjct: 167 PLETWKPPPPLPSERQPADRRITPALATPASPPTESQAGPRNQGQTAGRARGGAP 221
>gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 753
Score = 34.7 bits (78), Expect = 0.073
Identities = 39/128 (30%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 38 ALLAAAGRSWAGAP-GLDHP-----GVKTVVRGKCAWASLAVCGRELEESGPSSFEESHQ 91
A AAA +W+ P GL P + A AS AVCGR P +E+
Sbjct: 92 AAAAAATSTWSRGPRGLGIPDQACASSRADPGASLAAASQAVCGRSAGHGLPPGVQEA-- 149
Query: 92 VITVKTGASRGLAGSQAKAEPTRPRRPPPPSRGHREKSGRETAPRGLPPWESQ-PRPRAL 150
+T G A +A P PR+PPP E R R L W+ + P R
Sbjct: 150 ----RTLRPDGGALRAQEAIPREPRQPPP----EPELQCRLQVVRWLQLWQPRIPSSRLA 201
Query: 151 PCRRGTGG 158
P GG
Sbjct: 202 PISADPGG 209
>gi|154937344 complement component 1, q subcomponent-like 2 [Homo
sapiens]
Length = 287
Score = 34.3 bits (77), Expect = 0.096
Identities = 44/143 (30%), Positives = 54/143 (37%), Gaps = 25/143 (17%)
Query: 108 AKAEPTRPR------------RPPPPS-RGHREKSGR--ETAPRGLPPWESQPRPRALPC 152
AKA+P P PPPP +G + GR + PRG P P PR P
Sbjct: 47 AKAQPPGPSTAALEVMQDLSANPPPPFIQGPKGDPGRPGKPGPRGPPGEPGPPGPRGPPG 106
Query: 153 RRGTGGKPLNLRTLFPQLESRNTNAYLVGWREQKRSRGRD-RGSVVCNDPALSPGIKQSF 211
+G G+P P L+ A VG G D G V A G K +F
Sbjct: 107 EKGDSGRP-----GLPGLQLTAGTASGVGVVGGGAGVGGDSEGEVTSALSATFSGPKIAF 161
Query: 212 YLSLL----GSEKLRLQRVVEKL 230
Y+ L G E L+ VV L
Sbjct: 162 YVGLKSPHEGYEVLKFDDVVTNL 184
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 33.9 bits (76), Expect = 0.13
Identities = 34/116 (29%), Positives = 45/116 (38%), Gaps = 23/116 (19%)
Query: 48 AGAPGLDHP-GVKTVVRGKCAWASLAVCGRELEESGPSSFEESHQVITVKTGASRGLAGS 106
AGAPGL P G+ V A + + G E GP+ S+G +G+
Sbjct: 318 AGAPGLPGPRGIPGPVGAAGATGARGLVG----EPGPAG--------------SKGESGN 359
Query: 107 QAKAEPTRPRRPPPPS--RGHREKSGR--ETAPRGLPPWESQPRPRALPCRRGTGG 158
+ + P+ PP PS G R +G P G P P R LP G G
Sbjct: 360 KGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAG 415
>gi|191252814 RIMS binding protein 3B [Homo sapiens]
Length = 1639
Score = 33.9 bits (76), Expect = 0.13
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 105 GSQAKAEPTRPRRPPPPSRGHREKSGRETAPRGLPPWESQPRPRALPCRRGTG 157
GS+ + P P PPPP HR+ S PRG ESQP P G G
Sbjct: 321 GSRRLSPPPSPLPPPPPPSAHRKLSN----PRGGEGSESQPCEVLTPSPPGLG 369
>gi|191252806 RIMS binding protein 3C [Homo sapiens]
Length = 1639
Score = 33.9 bits (76), Expect = 0.13
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 105 GSQAKAEPTRPRRPPPPSRGHREKSGRETAPRGLPPWESQPRPRALPCRRGTG 157
GS+ + P P PPPP HR+ S PRG ESQP P G G
Sbjct: 321 GSRRLSPPPSPLPPPPPPSAHRKLSN----PRGGEGSESQPCEVLTPSPPGLG 369
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 33.9 bits (76), Expect = 0.13
Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Query: 89 SHQVITVKTGASRGLAGSQAKAEPTRPRRPPPPSRGHREKSGRETAPRGLPPWESQPRPR 148
+H +T+ +R L ++ E P P G R ++ A + PP + P P
Sbjct: 247 THFTLTLAEAHTRALTPARGGGEGD-----PGPIVGGRPENEDSLASQTSPP--APPAPV 299
Query: 149 ALPCRRGTGGKPLNLRTLFPQLESRNTNAYLVGWREQKRSRGRDRGSVVC 198
R + G R L P+ R + WR + R RDR VC
Sbjct: 300 PSTARARSPGARRGARELAPRAGRRRQPSGRTSWRRRARREQRDREPAVC 349
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 33.9 bits (76), Expect = 0.13
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 72 AVCGRELEESGPSSFEESHQVITVKTGASRGLAGSQAKAEPTR------PRRPPPPSRGH 125
A GR+ + G ++ Q + +R L GS A P R P PPPP R
Sbjct: 87 AAPGRQRADEGAAAARPERQRVW-----ARRLPGSAAAPAPGRDALRLPPPPPPPPERPR 141
Query: 126 REKSGRETAPRGLPPWESQPRPRALPCRR 154
+G P P P PR+ P R
Sbjct: 142 LPPAGLAGGPADSAPPSPAPAPRSRPAPR 170
>gi|153792195 DKFZP434H0735 protein [Homo sapiens]
Length = 1639
Score = 33.9 bits (76), Expect = 0.13
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 105 GSQAKAEPTRPRRPPPPSRGHREKSGRETAPRGLPPWESQPRPRALPCRRGTG 157
GS+ + P P PPPP HR+ S PRG ESQP P G G
Sbjct: 321 GSRRLSPPPSPLPPPPPPSAHRKLSN----PRGGEGSESQPCEVLTPSPPGLG 369
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,969,776
Number of Sequences: 37866
Number of extensions: 708582
Number of successful extensions: 4881
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 336
Number of HSP's that attempted gapping in prelim test: 4436
Number of HSP's gapped (non-prelim): 736
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.