Guide to the Human Genome
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Name: LOC100290986 Sequence: fasta or formatted (317aa) NCBI GI: 239751316
Description:

PREDICTED: hypothetical protein XP_002347803

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         23           2
 C cysteine            1.6          5           1
 D aspartate           3.2         10           1
 E glutamate           4.1         13           1
 F phenylalanine       2.2          7           2
 G glycine             9.5         30           2
 H histidine           0.9          3           1
 I isoleucine          1.6          5           1
 K lysine              2.8          9           1
 L leucine            13.2         42           3
 M methionine          2.8          9           2
 N asparagine          1.6          5           1
 P proline             9.1         29           2
 Q glutamine           4.1         13           1
 R arginine           11.4         36           2
 S serine              8.8         28           4
 T threonine           6.3         20           3
 V valine              5.7         18           2
 W tryptophan          2.8          9           2
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347803 
LOC100287773          1.000   PREDICTED: hypothetical protein XP_002343596 
LOC100293687          0.765   PREDICTED: hypothetical protein 
MICAL3                0.021   microtubule associated monoxygenase, calponin and L...
GAS2L1                0.013   growth arrest-specific 2 like 1 isoform a 
GAS2L1                0.013   growth arrest-specific 2 like 1 isoform a 
SRCAP                 0.011   Snf2-related CBP activator protein 
LOC100291661          0.011   PREDICTED: hypothetical protein XP_002345523 
LOC100288447          0.011   PREDICTED: hypothetical protein 
LOC100288447          0.011   PREDICTED: hypothetical protein XP_002343814 
LOC100291356          0.010   PREDICTED: hypothetical protein XP_002347017 
ZNF716                0.010   PREDICTED: zinc finger protein 716 
LOC100286907          0.010   PREDICTED: hypothetical protein XP_002342878 
C3orf54               0.010   hypothetical protein LOC389119 
COL14A1               0.010   collagen, type XIV, alpha 1 
MUC16                 0.010   mucin 16 
GTPBP1                0.010   GTP binding protein 1 
NRG1                  0.008   neuregulin 1 isoform GGF2 
JUND                  0.008   jun D proto-oncogene 
LOC283104             0.008   PREDICTED: hypothetical protein 
LOC651986             0.008   PREDICTED: similar to forkhead box L2 
LOC100128071          0.008   PREDICTED: hypothetical protein LOC100128071 
LOC283104             0.008   PREDICTED: hypothetical protein 
LOC651986             0.008   PREDICTED: similar to forkhead box L2 
LOC100128071          0.008   PREDICTED: hypothetical protein LOC100128071 
LOC283104             0.008   PREDICTED: hypothetical protein 
LOC100288524          0.008   PREDICTED: hypothetical protein XP_002342748 
LOC100128071          0.008   PREDICTED: hypothetical protein LOC100128071 
LOC651986             0.008   PREDICTED: similar to forkhead box L2 
ZFHX2                 0.008   PREDICTED: zinc finger homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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