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Search of human proteins with 239751209
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751209 PREDICTED: hypothetical protein XP_002347757 [Homo
sapiens]
(119 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756714 PREDICTED: hypothetical protein XP_002345030 [Homo ... 248 8e-67
gi|239751209 PREDICTED: hypothetical protein XP_002347757 [Homo ... 248 8e-67
gi|239745699 PREDICTED: hypothetical protein XP_002343529 [Homo ... 248 8e-67
gi|150378447 zinc and ring finger 3 [Homo sapiens] 30 0.55
gi|239746658 PREDICTED: hypothetical protein [Homo sapiens] 29 0.72
gi|27262622 neuron navigator 1 [Homo sapiens] 29 0.72
gi|115527078 spindlin family, member 3 [Homo sapiens] 29 0.94
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 29 0.94
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 29 0.94
gi|239745779 PREDICTED: hypothetical protein XP_002343588 [Homo ... 28 1.2
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 28 1.6
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 28 1.6
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 28 1.6
gi|7661950 SH2 domain binding protein 1 [Homo sapiens] 28 2.1
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 27 2.7
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 27 2.7
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 27 2.7
gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens] 27 2.7
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens] 27 2.7
gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens] 27 2.7
gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens] 27 2.7
gi|5454102 transforming, acidic coiled-coil containing protein 3... 27 2.7
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 27 2.7
gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens] 27 2.7
gi|169214732 PREDICTED: hypothetical protein [Homo sapiens] 27 3.6
gi|169214966 PREDICTED: hypothetical protein [Homo sapiens] 27 3.6
gi|239751337 PREDICTED: hypothetical protein [Homo sapiens] 27 3.6
gi|169214652 PREDICTED: hypothetical protein [Homo sapiens] 27 3.6
gi|112293285 spindlin [Homo sapiens] 27 3.6
gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens] 27 3.6
>gi|239756714 PREDICTED: hypothetical protein XP_002345030 [Homo
sapiens]
Length = 119
Score = 248 bits (633), Expect = 8e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MPAREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLR 60
MPAREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLR
Sbjct: 1 MPAREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLR 60
Query: 61 YWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAWR 119
YWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAWR
Sbjct: 61 YWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAWR 119
>gi|239751209 PREDICTED: hypothetical protein XP_002347757 [Homo
sapiens]
Length = 119
Score = 248 bits (633), Expect = 8e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MPAREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLR 60
MPAREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLR
Sbjct: 1 MPAREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLR 60
Query: 61 YWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAWR 119
YWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAWR
Sbjct: 61 YWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAWR 119
>gi|239745699 PREDICTED: hypothetical protein XP_002343529 [Homo
sapiens]
Length = 119
Score = 248 bits (633), Expect = 8e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MPAREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLR 60
MPAREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLR
Sbjct: 1 MPAREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLR 60
Query: 61 YWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAWR 119
YWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAWR
Sbjct: 61 YWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAWR 119
>gi|150378447 zinc and ring finger 3 [Homo sapiens]
Length = 836
Score = 29.6 bits (65), Expect = 0.55
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 24 CKH--VPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLRYWYPKKVSSAQCSATYSARTA 81
C+H + N + + T NLS R QR P YP +V Y RT+
Sbjct: 233 CRHNIIEQKGNPSAVCVETSNLSRGRQQRVTLP------VHYPGRVHRTNAIPAYPTRTS 286
Query: 82 RGRHKEARPPSGTERHGTEEDYGHREESGRKTRPP 116
H +RHG + Y + + ++ PP
Sbjct: 287 MDSHGNPVTLLTMDRHGEQSLYSPQTPAYIRSYPP 321
>gi|239746658 PREDICTED: hypothetical protein [Homo sapiens]
Length = 411
Score = 29.3 bits (64), Expect = 0.72
Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 13/122 (10%)
Query: 3 AREAGRRA-----GVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLT 57
ARE RRA G+SAGAG+ +A P P S VT + + R L
Sbjct: 159 AREGTRRAPVRKPGLSAGAGIWDPNAVAAGPRPGRPGLRSHVTRYMGYSSLSEGFRE-LE 217
Query: 58 PLRYWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPA 117
P R K +A RG ++ A P +G+ G E + SG ++R
Sbjct: 218 PHR----MKGFTAHSPQGRWKNRGRGTYRGAGPGAGSAPPG-ETPAPYTRRSGPRSR--T 270
Query: 118 WR 119
WR
Sbjct: 271 WR 272
>gi|27262622 neuron navigator 1 [Homo sapiens]
Length = 1874
Score = 29.3 bits (64), Expect = 0.72
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 17 GLTSSSACKHVPSPRNGATMSSVTGNLSGIR-VQRRIRP--------GLTPLRYWYPKKV 67
G S+ + +P P ++MS VTG G R V I P GLTP R P KV
Sbjct: 663 GARSNIQYRSLPRPAKSSSMS-VTGGRGGPRPVSSSIDPSLLSTKQGGLTPSRLKEPTKV 721
Query: 68 SSAQCSATYSARTARGRHK 86
+S + + +T R + K
Sbjct: 722 ASGRTTPAPVNQTDREKEK 740
>gi|115527078 spindlin family, member 3 [Homo sapiens]
Length = 258
Score = 28.9 bits (63), Expect = 0.94
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 6 AGRRAGVSAGAGLTSSSACKHVPSPRNGATM--SSVTGNLSGIRVQRRIRPGLTPLRYW 62
AG+R+ AG G S + K + + + S GN+ G R+Q + G PL W
Sbjct: 10 AGQRSRTGAGHGSVSVTMIKRKAAHKKHRSRPTSQPRGNIVGCRIQHGWKDGDEPLTQW 68
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 28.9 bits (63), Expect = 0.94
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 59 LRYWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRP 115
+R WY + +C R RHK++R G ER +E R+E G + RP
Sbjct: 65 IREWYCR-----ECREKDPKLEIRYRHKKSRERDGNERDSSEP----RDEGGGRKRP 112
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 28.9 bits (63), Expect = 0.94
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 59 LRYWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRP 115
+R WY + +C R RHK++R G ER +E R+E G + RP
Sbjct: 65 IREWYCR-----ECREKDPKLEIRYRHKKSRERDGNERDSSEP----RDEGGGRKRP 112
>gi|239745779 PREDICTED: hypothetical protein XP_002343588 [Homo
sapiens]
Length = 201
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 5 EAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTP 58
+ G RAG S G+GL SS+A +G S G+ +R+ R + LTP
Sbjct: 154 DLGSRAGRSQGSGLNSSTA--------HGRAESKTQGH---VRIPRPVTASLTP 196
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 60 RYWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAW 118
R W K + Q +Y + + R K+ P + + + Y + E R TRP AW
Sbjct: 504 RKWKRKNYLALQ---SYCKMSLQEREKQLSPEAQARINARLQQYRAKAELARSTRPQAW 559
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 28.1 bits (61), Expect = 1.6
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 18/111 (16%)
Query: 20 SSSACKHVPSPRNGATMSSVTGNLSGIR----VQRRIRPGLTPLRYWYPKKVSSAQC--- 72
S S V R+ + S VT S R ++RR R TPL P+K S ++
Sbjct: 1994 SRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSR-SRTPL---LPRKRSRSRSPLA 2049
Query: 73 ----SATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAWR 119
S + + RTARG+ R P R G + R PPA R
Sbjct: 2050 IRRRSRSRTPRTARGKRSLTRSPPAIRRRSAS---GSSSDRSRSATPPATR 2097
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 60 RYWYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPPAW 118
R W K + Q +Y + + R K+ P + + + Y + E R TRP AW
Sbjct: 504 RKWKRKNYLALQ---SYCKMSLQEREKQLSPEAQARINARLQQYRAKAELARSTRPQAW 559
>gi|7661950 SH2 domain binding protein 1 [Homo sapiens]
Length = 1173
Score = 27.7 bits (60), Expect = 2.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 84 RHKEARPPSGTERHGTEEDYGHREESGRKTRP 115
+ K+ R SG+E+ G +E+ G R++ R+ P
Sbjct: 933 KKKKRRKGSGSEQEGEDEEGGERKKKKRRRHP 964
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 18/91 (19%)
Query: 14 AGAGLT---SSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLRYWYPKKVSSA 70
AG GLT S+ + VP PR + + L R R GL
Sbjct: 133 AGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLG------------- 179
Query: 71 QCSATYSARTARGRHKEARPPSGTERHGTEE 101
+ ART RG H+ RP G G +
Sbjct: 180 --GRSARARTRRGPHRTRRPEPGPHHTGARQ 208
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 18/91 (19%)
Query: 14 AGAGLT---SSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLRYWYPKKVSSA 70
AG GLT S+ + VP PR + + L R R GL
Sbjct: 133 AGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLG------------- 179
Query: 71 QCSATYSARTARGRHKEARPPSGTERHGTEE 101
+ ART RG H+ RP G G +
Sbjct: 180 --GRSARARTRRGPHRTRRPEPGPHHTGARQ 208
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 27.3 bits (59), Expect = 2.7
Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 18/91 (19%)
Query: 14 AGAGLT---SSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLRYWYPKKVSSA 70
AG GLT S+ + VP PR + + L R R GL
Sbjct: 133 AGGGLTKYNSAHSSSRVPRPRLPSQRRGASCGLGPGPESRAARQGLG------------- 179
Query: 71 QCSATYSARTARGRHKEARPPSGTERHGTEE 101
+ ART RG H+ RP G G +
Sbjct: 180 --GRSARARTRRGPHRTRRPEPGPHHTGARQ 208
>gi|195546902 suppressor of Ty 5 homolog isoform b [Homo sapiens]
Length = 1083
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 79 RTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPP 116
R+A G KE P E EE+Y EE RPP
Sbjct: 31 RSAAGSEKEEEPEDEEEEE-EEEEYDEEEEEEDDDRPP 67
>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 79 RTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPP 116
R+A G KE P E EE+Y EE RPP
Sbjct: 31 RSAAGSEKEEEPEDEEEEE-EEEEYDEEEEEEDDDRPP 67
>gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 79 RTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPP 116
R+A G KE P E EE+Y EE RPP
Sbjct: 31 RSAAGSEKEEEPEDEEEEE-EEEEYDEEEEEEDDDRPP 67
>gi|20149524 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 79 RTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPP 116
R+A G KE P E EE+Y EE RPP
Sbjct: 31 RSAAGSEKEEEPEDEEEEE-EEEEYDEEEEEEDDDRPP 67
>gi|5454102 transforming, acidic coiled-coil containing protein 3
[Homo sapiens]
Length = 838
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 28 PSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLRYWYPKKVSSAQCSATYSARTARGRHKE 87
P +G+ +V NLS + RR+ P L + + + A T G +E
Sbjct: 171 PGKVSGSPEQAVEENLSSYSLDRRVTPASETLE-------DPCRTESQHKAETPHGAEEE 223
Query: 88 ARPPSGTERHGTEEDYGH 105
+ + HG EE+ H
Sbjct: 224 CKAET---PHGAEEECRH 238
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 27.3 bits (59), Expect = 2.7
Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 11/115 (9%)
Query: 2 PAREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLRY 61
P+ + R +A A T + K PSPR+ + G +G +RR R
Sbjct: 338 PSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRR-------- 389
Query: 62 WYPKKVSSAQCSATYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRPP 116
++ ++ SA+ R R R + A PP G+ R + SGR P
Sbjct: 390 --RRRRRRSRSSASAPRRRGRRRPRPA-PPRGSSRSLSRARSSSDSGSGRGAPGP 441
>gi|61097912 nucleolar protein with MIF4G domain 1 [Homo sapiens]
Length = 860
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 79 RTARGRHKEARPPSGTE---RHGTEEDYGHREESGRKTRP 115
R AR + A P G R G EE GHR+++ + RP
Sbjct: 93 RKARRLQRTAGPEQGPGLGGRSGAEEASGHRQDTEERARP 132
>gi|169214732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 26.9 bits (58), Expect = 3.6
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 8 RRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLRYWYPKKV 67
RR G G GLT + + +P+ +S + + G+R QR P L +W +
Sbjct: 52 RRTG---GPGLTGGAGRARILTPQR---VSRLETSALGVRCQRPSSPLCCRLLFWLHRSP 105
Query: 68 SSAQCSATYSARTARGRHKEARPPSGT 94
S + R + PP GT
Sbjct: 106 HSRPSVPRATTGRNRALPLQCPPPGGT 132
>gi|169214966 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 26.9 bits (58), Expect = 3.6
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 8 RRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLRYWYPKKV 67
RR G G GLT + + +P+ +S + + G+R QR P L +W +
Sbjct: 52 RRTG---GPGLTGGAGRARILTPQR---VSRLETSALGVRCQRPSSPLCCRLLFWLHRSP 105
Query: 68 SSAQCSATYSARTARGRHKEARPPSGT 94
S + R + PP GT
Sbjct: 106 HSRPSVPRATTGRNRALPLQCPPPGGT 132
>gi|239751337 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 26.9 bits (58), Expect = 3.6
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 75 TYSARTARGRHKEARPPSGTERHGTEEDYGHREESGRKTRP---PAW 118
T ++R G +A P R GHRE+SGR+T P P W
Sbjct: 97 TGASRGLAGSQAKAEPTR--PRRPPPPSRGHREKSGRETAPRGLPPW 141
>gi|169214652 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 26.9 bits (58), Expect = 3.6
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 8 RRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLRYWYPKKV 67
RR G G GLT + + +P+ +S + + G+R QR P L +W +
Sbjct: 52 RRTG---GPGLTGGAGRARILTPQR---VSRLETSALGVRCQRPSSPLCCRLLFWLHRSP 105
Query: 68 SSAQCSATYSARTARGRHKEARPPSGT 94
S + R + PP GT
Sbjct: 106 HSRPSVPRATTGRNRALPLQCPPPGGT 132
>gi|112293285 spindlin [Homo sapiens]
Length = 262
Score = 26.9 bits (58), Expect = 3.6
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 3 AREAGRRAGVSAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIRVQRRIRPGLTPLRYW 62
+R AGVSA +S KH S +S N+ G R+Q + G P+ W
Sbjct: 13 SRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPVTQW 72
>gi|120587027 ubiquitin specific peptidase 31 [Homo sapiens]
Length = 1352
Score = 26.9 bits (58), Expect = 3.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 13 SAGAGLTSSSACKHVPSPRNGATMSSVTGNLSGIR 47
S+ AG TSSS C+H S G+ +SVT S R
Sbjct: 775 SSVAGSTSSSLCEHWVSRLPGSKPASVTSAASSRR 809
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.127 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,383,659
Number of Sequences: 37866
Number of extensions: 235569
Number of successful extensions: 741
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 64
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.