Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131342 Sequence: fasta or formatted (197aa) NCBI GI: 169214732
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {197aa} PREDICTED: hypothetical protein
alt mRNA {197aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         14           1
 C cysteine            4.6          9           2
 D aspartate           0.5          1           1
 E glutamate           3.0          6           1
 F phenylalanine       1.5          3           1
 G glycine            12.2         24           2
 H histidine           3.0          6           1
 I isoleucine          1.0          2           1
 K lysine              1.0          2           1
 L leucine            12.2         24           2
 M methionine          0.5          1           1
 N asparagine          2.5          5           1
 P proline            11.2         22           3
 Q glutamine           3.6          7           1
 R arginine           15.2         30           2
 S serine             10.2         20           2
 T threonine           6.6         13           2
 V valine              3.0          6           1
 W tryptophan          1.0          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131342          1.000   PREDICTED: hypothetical protein 
LOC100131342          1.000   PREDICTED: hypothetical protein 
PHF15                 0.034   PHD finger protein 15 
LOC100130360          0.031   PREDICTED: hypothetical protein 
TTBK1                 0.028   tau tubulin kinase 1 
ZNF444                0.028   zinc finger protein 444 
ATP13A2               0.023   ATPase type 13A2 isoform 3 
CHD3                  0.021   chromodomain helicase DNA binding protein 3 isoform...
MAP7D1                0.021   MAP7 domain containing 1 
LOC729570             0.021   PREDICTED: hypothetical protein 
LOC729570             0.021   PREDICTED: hypothetical protein 
LOC729570             0.021   PREDICTED: hypothetical protein 
LOC100291750          0.021   PREDICTED: hypothetical protein XP_002345695 
ANKRD36               0.021   PREDICTED: ankyrin repeat domain 36 
LOC646509             0.021   PREDICTED: hypothetical protein 
LOC100293536          0.018   PREDICTED: hypothetical protein 
LOC100291150          0.018   PREDICTED: hypothetical protein XP_002347543 
LOC100289439          0.018   PREDICTED: hypothetical protein XP_002342180 
SH3RF3                0.018   SH3 domain containing ring finger 3 
FOXB1                 0.018   forkhead box B1 
LOC100291890          0.018   PREDICTED: hypothetical protein XP_002344521 
LOC100133756          0.018   PREDICTED: hypothetical protein, partial 
LOC100289901          0.018   PREDICTED: hypothetical protein XP_002347167 
LOC100287920          0.018   PREDICTED: hypothetical protein XP_002344198 
LOC100288618          0.018   PREDICTED: hypothetical protein XP_002344285 
GPR137                0.018   G protein-coupled receptor 137 
SRRM1                 0.018   serine/arginine repetitive matrix 1 
C18orf56              0.018   hypothetical protein LOC494514 
PRICKLE1              0.018   prickle homolog 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press