Guide to the Human Genome
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Name: SPIN1 Sequence: fasta or formatted (262aa) NCBI GI: 112293285
Description:

spindlin

Referenced in:

Spindle, M phase, and Meiosis

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         14           1
 C cysteine            0.8          2           1
 D aspartate           8.4         22           3
 E glutamate           6.1         16           1
 F phenylalanine       2.7          7           1
 G glycine             7.6         20           1
 H histidine           3.1          8           1
 I isoleucine          3.8         10           1
 K lysine              8.0         21           2
 L leucine             5.7         15           2
 M methionine          3.8         10           2
 N asparagine          2.7          7           1
 P proline             6.1         16           2
 Q glutamine           3.1          8           1
 R arginine            5.7         15           2
 S serine              6.9         18           2
 T threonine           4.6         12           1
 V valine              9.5         25           2
 W tryptophan          1.5          4           1
 Y tyrosine            4.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spindlin 
SPIN3                 0.830   spindlin family, member 3 
SPIN2B                0.756   spindlin-like protein 2 
SPIN2B                0.756   spindlin-like protein 2 
SPIN2B                0.756   spindlin-like protein 2 
SPIN2A                0.752   spindlin family, member 2 
SPIN4                 0.662   spindlin family, member 4 
MUC5AC                0.010   mucin 5AC 
MUC5B                 0.010   mucin 5, subtype B, tracheobronchial 
CRKRS                 0.006   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.006   Cdc2-related kinase, arginine/serine-rich isoform 1...
MLXIP                 0.006   MLX interacting protein 
C19orf70              0.006   hypothetical protein LOC125988 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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