Guide to the Human Genome
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Name: LOC100291221 Sequence: fasta or formatted (119aa) NCBI GI: 239751209
Description:

PREDICTED: hypothetical protein XP_002347757

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         13           1
 C cysteine            1.7          2           1
 D aspartate           0.8          1           1
 E glutamate           5.9          7           2
 F phenylalanine       0.0          0           0
 G glycine            10.9         13           1
 H histidine           3.4          4           1
 I isoleucine          1.7          2           1
 K lysine              4.2          5           2
 L leucine             3.4          4           1
 M methionine          1.7          2           1
 N asparagine          1.7          2           1
 P proline             8.4         10           2
 Q glutamine           1.7          2           1
 R arginine           15.1         18           2
 S serine             11.8         14           3
 T threonine           7.6          9           1
 V valine              4.2          5           1
 W tryptophan          1.7          2           1
 Y tyrosine            3.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347757 
LOC100292094          1.000   PREDICTED: hypothetical protein XP_002345030 
LOC100287561          1.000   PREDICTED: hypothetical protein XP_002343529 
ZNRF3                 0.022   zinc and ring finger 3 
LOC728351             0.018   PREDICTED: hypothetical protein 
NAV1                  0.018   neuron navigator 1 
SPIN3                 0.018   spindlin family, member 3 
CXXC1                 0.018   CXXC finger 1 (PHD domain) isoform 1 
CXXC1                 0.018   CXXC finger 1 (PHD domain) isoform 2 
LOC100287420          0.013   PREDICTED: hypothetical protein XP_002343588 
PHF14                 0.013   PHD finger protein 14 isoform 2 
SRRM2                 0.013   splicing coactivator subunit SRm300 
PHF14                 0.013   PHD finger protein 14 isoform 1 
CTR9                  0.013   SH2 domain binding protein 1 
LOC100291624          0.009   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.009   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.009   PREDICTED: hypothetical protein XP_002342583 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform b 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
SUPT5H                0.009   suppressor of Ty 5 homolog isoform a 
TACC3                 0.009   transforming, acidic coiled-coil containing protein 3...
FLJ37078              0.009   hypothetical protein LOC222183 
NOM1                  0.009   nucleolar protein with MIF4G domain 1 
LOC100131342          0.009   PREDICTED: hypothetical protein 
LOC100131342          0.009   PREDICTED: hypothetical protein 
LOC728965             0.009   PREDICTED: hypothetical protein 
LOC100131342          0.009   PREDICTED: hypothetical protein 
SPIN1                 0.009   spindlin 
USP31                 0.009   ubiquitin specific peptidase 31 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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