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Search of human proteins with 239751032
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo
sapiens]
(176 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756524 PREDICTED: hypothetical protein [Homo sapiens] 377 e-105
gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo ... 377 e-105
gi|239745462 PREDICTED: hypothetical protein XP_002343470 [Homo ... 377 e-105
gi|169212132 PREDICTED: CMT1A duplicated region transcript 15-li... 33 0.13
gi|89041269 PREDICTED: CMT1A duplicated region transcript 15-lik... 33 0.13
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 32 0.22
gi|169211692 PREDICTED: CMT1A duplicated region transcript 15-li... 32 0.22
gi|89041220 PREDICTED: CMT1A duplicated region transcript 15-lik... 32 0.22
gi|239745981 PREDICTED: hypothetical protein XP_002343632 [Homo ... 32 0.28
gi|4758156 diacylglycerol kinase, iota [Homo sapiens] 31 0.49
gi|169208912 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|169208667 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|169208084 PREDICTED: hypothetical protein [Homo sapiens] 30 0.83
gi|4557743 Mediterranean fever protein [Homo sapiens] 30 1.1
gi|239753264 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo ... 30 1.4
gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo ... 30 1.4
gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo ... 30 1.4
gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo ... 30 1.4
gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo ... 30 1.4
gi|134031945 SCO-spondin [Homo sapiens] 30 1.4
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 29 1.8
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 29 1.8
gi|223005897 GPN-loop GTPase 1 isoform a [Homo sapiens] 29 1.8
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 29 1.8
gi|38524591 intramembrane protease 5 [Homo sapiens] 29 2.4
gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo ... 28 3.1
gi|55741868 zinc finger protein 319 [Homo sapiens] 28 3.1
gi|4507595 tumor necrosis factor ligand superfamily, member 11 i... 28 4.1
gi|55770876 notch4 preproprotein [Homo sapiens] 28 4.1
>gi|239756524 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 377 bits (968), Expect = e-105
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60
MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV
Sbjct: 1 MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60
Query: 61 IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120
IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL
Sbjct: 61 IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120
Query: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176
ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG
Sbjct: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176
>gi|239751032 PREDICTED: hypothetical protein XP_002347676 [Homo
sapiens]
Length = 176
Score = 377 bits (968), Expect = e-105
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60
MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV
Sbjct: 1 MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60
Query: 61 IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120
IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL
Sbjct: 61 IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120
Query: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176
ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG
Sbjct: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176
>gi|239745462 PREDICTED: hypothetical protein XP_002343470 [Homo
sapiens]
Length = 176
Score = 377 bits (968), Expect = e-105
Identities = 176/176 (100%), Positives = 176/176 (100%)
Query: 1 MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60
MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV
Sbjct: 1 MHIDAFWASLGWGCKAHFQLAGKWLKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAV 60
Query: 61 IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120
IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL
Sbjct: 61 IRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFL 120
Query: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176
ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG
Sbjct: 121 ARQQHADDTLACQSGPSSCQGGWRVAQLTSFPLQDAHSLGQSLIRPDERREAPIPG 176
>gi|169212132 PREDICTED: CMT1A duplicated region transcript 15-like
2 [Homo sapiens]
Length = 110
Score = 33.1 bits (74), Expect = 0.13
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 27 GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
G+ G GP G + HC P + S +V R TCG CR
Sbjct: 25 GQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKAS 84
Query: 77 KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
G P G G SS GP GAA
Sbjct: 85 MGR--------APSRESAGGGGSSSQGPAQPGAA 110
>gi|89041269 PREDICTED: CMT1A duplicated region transcript 15-like 2
[Homo sapiens]
Length = 110
Score = 33.1 bits (74), Expect = 0.13
Identities = 27/94 (28%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 27 GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
G+ G GP G + HC P + S +V R TCG CR
Sbjct: 25 GQPGAGPSWPGHTRDPIGAASAHCPCPGGDSGAHGGTDTCSWSVRRHSSTCGTGCRAKAS 84
Query: 77 KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
G P G G SS GP GAA
Sbjct: 85 MGR--------APSRESAGGGGSSSQGPAQPGAA 110
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 32.3 bits (72), Expect = 0.22
Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 25 LKGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGI 84
LKGE+G +G P PP G R+K A P GT G +GL EG G
Sbjct: 1526 LKGERGRQGRRGWPG--PPGTPGSRRKTAAHGRRGHTGPQGTAGIPGPDGL---EGSLG- 1579
Query: 85 VLSVPQ------HLHPEGTGVSSSGPLG 106
L PQ + E GV S GP G
Sbjct: 1580 -LKGPQGPRGEAGVKGEKGGVGSKGPQG 1606
>gi|169211692 PREDICTED: CMT1A duplicated region transcript 15-like
1 [Homo sapiens]
Length = 110
Score = 32.3 bits (72), Expect = 0.22
Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 27 GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
G+ G GP G + HC P + S ++ R TCG CR
Sbjct: 25 GQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAKAS 84
Query: 77 KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
G P G G SS GP GAA
Sbjct: 85 MGR--------APSRESAGGGGSSSQGPAQPGAA 110
>gi|89041220 PREDICTED: CMT1A duplicated region transcript 15-like 1
[Homo sapiens]
Length = 110
Score = 32.3 bits (72), Expect = 0.22
Identities = 26/94 (27%), Positives = 31/94 (32%), Gaps = 18/94 (19%)
Query: 27 GEKGWGP----------GKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLL 76
G+ G GP G + HC P + S ++ R TCG CR
Sbjct: 25 GQPGAGPSWPGHTIDPIGAASVHCPCPGGDSGAHGGTDTCSWSIRRHSSTCGTGCRAKAS 84
Query: 77 KGEGRWGIVLSVPQHLHPEGTGVSSSGPLGSGAA 110
G P G G SS GP GAA
Sbjct: 85 MGR--------APSRESAGGGGSSSQGPAQPGAA 110
>gi|239745981 PREDICTED: hypothetical protein XP_002343632 [Homo
sapiens]
Length = 474
Score = 32.0 bits (71), Expect = 0.28
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 40 CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGV 99
C+P +QG R V A R G CG C+ + + E R + SV + P+
Sbjct: 14 CVPGDSQGSRAGIRVRVLCAGRRSGRPCGHPCQSAVCRAELRAALRASVSECCVPD---E 70
Query: 100 SSSGPLG 106
+ GP G
Sbjct: 71 AQGGPAG 77
Score = 28.9 bits (63), Expect = 2.4
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 40 CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQ 90
C+P AQG R V A R G CG C+ + + + R + SV +
Sbjct: 170 CVPGDAQGNRAGIRVRVLCAGRRSGRPCGHPCQSAVCRTKLRAALRASVSE 220
Score = 28.1 bits (61), Expect = 4.1
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 40 CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGV 99
C+P +QG R SV A G CG C+ + + R + SV + P G
Sbjct: 378 CVPGDSQGGRVGIRVSVLCAGRLSGQPCGHPCQSAVCRATVRAAVRASVSECCVP---GD 434
Query: 100 SSSGPLG 106
S G +G
Sbjct: 435 SQGGRVG 441
Score = 27.3 bits (59), Expect = 7.0
Identities = 17/64 (26%), Positives = 26/64 (40%)
Query: 40 CLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTGV 99
C+P AQG R V A G CG C+ + + R + S+ + P +
Sbjct: 274 CVPGDAQGNRAGIRVRVLCAGRSSGRPCGHPCQSAVCRATLRAAVQASMSECCVPGDSQG 333
Query: 100 SSSG 103
S +G
Sbjct: 334 SRAG 337
>gi|4758156 diacylglycerol kinase, iota [Homo sapiens]
Length = 1065
Score = 31.2 bits (69), Expect = 0.49
Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 21/116 (18%)
Query: 34 GKGAPHCLP-PRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQHL 92
G+G H LP P A+G + A + + A PG G C G G S +
Sbjct: 5 GRGC-HLLPLPAARGPARAPAAAAAAAASPPGPCSGAACAPSAAAGAGAMNPSSSAGEEK 63
Query: 93 HPEGTGVSSSG---------------PLGSG---AASLLATHPPFLARQQHADDTL 130
G G SSSG P G+G AA A P A Q+ D+ L
Sbjct: 64 GATG-GSSSSGSGAGSCCLGAEGGADPRGAGSAAAAGAAALDEPAAAGQKEKDEAL 118
>gi|169208912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 30.4 bits (67), Expect = 0.83
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 25 LKGEKGWGPGKGAPHCLPPRAQGQRQ-KAATSVSTAVIRPGGTCGR 69
L G + PG G HC R +G+R+ + A V + PGG C R
Sbjct: 204 LGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTR 249
>gi|169208667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 30.4 bits (67), Expect = 0.83
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 25 LKGEKGWGPGKGAPHCLPPRAQGQRQ-KAATSVSTAVIRPGGTCGR 69
L G + PG G HC R +G+R+ + A V + PGG C R
Sbjct: 204 LGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTR 249
>gi|169208084 PREDICTED: hypothetical protein [Homo sapiens]
Length = 266
Score = 30.4 bits (67), Expect = 0.83
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 25 LKGEKGWGPGKGAPHCLPPRAQGQRQ-KAATSVSTAVIRPGGTCGR 69
L G + PG G HC R +G+R+ + A V + PGG C R
Sbjct: 204 LGGARAVDPGTGWGHCACSRRRGERRSRRAAGVPGELGAPGGHCTR 249
>gi|4557743 Mediterranean fever protein [Homo sapiens]
Length = 781
Score = 30.0 bits (66), Expect = 1.1
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 93 HPEGTGVSSSGPLGSGAASLLATHP---------PFLARQQHADDTLACQSGP 136
HPEG + P G GAASL + P P R++ A + L Q P
Sbjct: 123 HPEGNEGNGPRPYGGGAASLRCSQPEAGRGLSRKPLSKRREKASEGLDAQGKP 175
>gi|239753264 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 12 WGCKAHFQLAGKWLKGEKGWGPGKGAPHC---LPPRAQGQRQKAATS 55
WG +A G W K W G+ AP C PR G R AA +
Sbjct: 389 WGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAA 435
>gi|239750914 PREDICTED: hypothetical protein XP_002347614 [Homo
sapiens]
Length = 492
Score = 29.6 bits (65), Expect = 1.4
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 19 QLAGKWLKGEKGWGPGKGAPHCLPP 43
+L GK G KG G GAPH LPP
Sbjct: 326 KLGGKRGVGRKGQGTRLGAPHSLPP 350
>gi|239747823 PREDICTED: hypothetical protein XP_002348330 [Homo
sapiens]
Length = 444
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 12 WGCKAHFQLAGKWLKGEKGWGPGKGAPHC---LPPRAQGQRQKAATS 55
WG +A G W K W G+ AP C PR G R AA +
Sbjct: 389 WGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAA 435
>gi|239745970 PREDICTED: hypothetical protein XP_002343628 [Homo
sapiens]
Length = 138
Score = 29.6 bits (65), Expect = 1.4
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 21/108 (19%)
Query: 32 GPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQH 91
GP P PP A + + PG T R C +GEGR
Sbjct: 22 GPISVGPQAAPPGATVTHPPTKPLICSGGFIPG-TRPRLCSR---EGEGR---------- 67
Query: 92 LHPEGTGVSSSGPLGSGAASLLATHPPFLARQQHADDTLACQSGPSSC 139
+G + GPL S +SLL P + R+ HAD + +GP C
Sbjct: 68 ---KGEALGRQGPLRS--SSLLPPLPTWPGREGHADGNI--PAGPGLC 108
>gi|239745312 PREDICTED: hypothetical protein XP_002343435 [Homo
sapiens]
Length = 492
Score = 29.6 bits (65), Expect = 1.4
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 19 QLAGKWLKGEKGWGPGKGAPHCLPP 43
+L GK G KG G GAPH LPP
Sbjct: 326 KLGGKRGVGRKGQGTRLGAPHSLPP 350
>gi|239741693 PREDICTED: hypothetical protein XP_002342282 [Homo
sapiens]
Length = 480
Score = 29.6 bits (65), Expect = 1.4
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 12 WGCKAHFQLAGKWLKGEKGWGPGKGAPHC---LPPRAQGQRQKAATS 55
WG +A G W K W G+ AP C PR G R AA +
Sbjct: 389 WGRRAGRASPGLWAKRAGSWELGRPAPPCPEASAPRPVGSRDVAAAA 435
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 29.6 bits (65), Expect = 1.4
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 33 PGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEG 80
P +P CL P Q ++Q + P G C R C GL G
Sbjct: 4285 PHHRSPPCLGPDTQTRQQPCPGLLEACSWGPWGPCSRSCGPGLASRSG 4332
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 29.3 bits (64), Expect = 1.8
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 26 KGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIV 85
+G W G G P C + G R+ + AV G + R L G+V
Sbjct: 87 RGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLV 146
Query: 86 LSVPQHLHPEGTGVSSSGPLG----SGAASLLA 114
L EG GV + G G +GAAS L+
Sbjct: 147 LG-------EGVGVGAGGEGGGEGAAGAASSLS 172
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 29.3 bits (64), Expect = 1.8
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 26 KGEKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIV 85
+G W G G P C + G R+ + AV G + R L G+V
Sbjct: 87 RGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLV 146
Query: 86 LSVPQHLHPEGTGVSSSGPLG----SGAASLLA 114
L EG GV + G G +GAAS L+
Sbjct: 147 LG-------EGVGVGAGGEGGGEGAAGAASSLS 172
>gi|223005897 GPN-loop GTPase 1 isoform a [Homo sapiens]
Length = 388
Score = 29.3 bits (64), Expect = 1.8
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 40 CLPPRAQGQRQKAATSVSTAVIR-PGGTCGRECREGL-LKGEGRWGIVLSVPQHLHPEGT 97
CL R G R+K A S + A ++ GG C L + G G+ V + HLH +GT
Sbjct: 3 CLYGRVGGARRKMAASAAAAELQASGGPRHPVCLLVLGMAGSGKTTFVQRLTGHLHAQGT 62
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 29.3 bits (64), Expect = 1.8
Identities = 35/126 (27%), Positives = 51/126 (40%), Gaps = 27/126 (21%)
Query: 28 EKGWGPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLS 87
++G PG PH L G +++ S + A + ++ +L RW I+
Sbjct: 1268 DRGSDPGTSPPH-LSTCGLGTGEESRQSQANAPVY---------QQNVLHTGKRWFIICP 1317
Query: 88 VPQHLHPEGTGVSSSGPLGS---GAASLLATH---------PPFLARQQHADDTLACQSG 135
V +H PE S PL S A+ A + P FLA QQ L Q+G
Sbjct: 1318 VAEHPAPEAPESSPPLPLSSLPPEASQDSAPYKDQLSSKEQPSFLASQQ-----LLSQAG 1372
Query: 136 PSSCQG 141
PS+ G
Sbjct: 1373 PSNPPG 1378
>gi|38524591 intramembrane protease 5 [Homo sapiens]
Length = 684
Score = 28.9 bits (63), Expect = 2.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 31 WGPGKGAPHCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVL 86
W PG+ +PH R+ QR T TA++ G C + L +G+G G+++
Sbjct: 69 WCPGEDSPHQAQLRSPSQRPLRQT---TAMVM-RGNCSFHTKGWLAQGQGAHGLLI 120
>gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo
sapiens]
Length = 485
Score = 28.5 bits (62), Expect = 3.1
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 14/66 (21%)
Query: 39 HCLPPRAQGQRQKAATSVSTAVIRPGGTCGRECREGLLKGEGRWGIVLSVPQHLHPEGTG 98
H LPP +G P G +CRE + G W + H P G+
Sbjct: 166 HQLPPHIEGV--------------PEGRTVAKCRENWSQWTGHWSQWTGLWYHEPPTGSL 211
Query: 99 VSSSGP 104
+SSS P
Sbjct: 212 ISSSSP 217
>gi|55741868 zinc finger protein 319 [Homo sapiens]
Length = 582
Score = 28.5 bits (62), Expect = 3.1
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 87 SVPQHLHPEGTGVSSSGPLGSGAASLLATHPPFLARQQHADDTLACQSGPSSCQGGWRVA 146
++ +H P GT + PLG +L P L QHA A + GP G +A
Sbjct: 30 ALAEHTLPPGT---AENPLGCAVYGILLQPDPGLQPPQHAPLQAAGEPGPKCGVCGHDLA 86
Query: 147 QLTS 150
L+S
Sbjct: 87 HLSS 90
>gi|4507595 tumor necrosis factor ligand superfamily, member 11
isoform 1 [Homo sapiens]
Length = 317
Score = 28.1 bits (61), Expect = 4.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 23 KWLKGEKGWGPGKGAP-----HCLPPRAQGQRQKAATSVSTAVIRPG 64
K+L+G + G G GAP H PP A Q A+ S+ A++ G
Sbjct: 10 KYLRGSEEMGGGPGAPHEGPLHAPPPPAPHQPPAASRSMFVALLGLG 56
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 28.1 bits (61), Expect = 4.1
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 59 AVIRPGGTC-GRECREGLLKGEGRWGIV-------LSVPQHLHPEGTGVSSSGPLGSGAA 110
A PG TC R L GR G++ LS P H G S+ PL
Sbjct: 362 ATCAPGSTCIDRVGSFSCLCPPGRTGLLCHLEDMCLSQPCH----GDAQCSTNPLTGSTL 417
Query: 111 SLLATHPPFLARQQHADDTLACQSGPSSCQGG 142
L Q D+ L Q GPS C+ G
Sbjct: 418 CLCQPGYSGPTCHQDLDECLMAQQGPSPCEHG 449
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,884,248
Number of Sequences: 37866
Number of extensions: 469483
Number of successful extensions: 1420
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 80
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.