Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC648809 Sequence: fasta or formatted (276aa) NCBI GI: 239750895
Description:

PREDICTED: similar to elongation factor Tu GTP binding domain containing 1

Not currently referenced in the text

Other entries for this name:
alt mRNA {276aa} PREDICTED: similar to elongation factor Tu GTP binding domain con...
alt mRNA {276aa} PREDICTED: similar to elongation factor Tu GTP binding domain con...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         23           3
 C cysteine            2.5          7           1
 D aspartate           3.3          9           1
 E glutamate           8.3         23           2
 F phenylalanine       5.8         16           1
 G glycine             6.5         18           1
 H histidine           1.1          3           1
 I isoleucine          2.5          7           1
 K lysine              4.7         13           2
 L leucine             8.7         24           2
 M methionine          2.9          8           1
 N asparagine          2.5          7           2
 P proline             8.3         23           2
 Q glutamine           6.5         18           2
 R arginine            6.2         17           2
 S serine              6.9         19           2
 T threonine           4.0         11           1
 V valine              6.5         18           1
 W tryptophan          1.1          3           1
 Y tyrosine            3.3          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to elongation factor Tu GTP bind... 
LOC648809             1.000   PREDICTED: similar to elongation factor Tu GTP bind...
LOC648809             1.000   PREDICTED: similar to elongation factor Tu GTP bind...
EFTUD1                0.715   elongation factor Tu GTP binding domain containing 1...
EFTUD1                0.715   elongation factor Tu GTP binding domain containing 1...
EEF2                  0.035   eukaryotic translation elongation factor 2 
ASXL3                 0.020   additional sex combs like 3 
USP35                 0.015   ubiquitin specific protease 35 
ZFHX3                 0.013   AT-binding transcription factor 1 
AP3D1                 0.011   adaptor-related protein complex 3, delta 1 subunit ...
ETV6                  0.011   ets variant 6 
AP3D1                 0.009   adaptor-related protein complex 3, delta 1 subunit ...
TNS1                  0.009   tensin 
AXIN1                 0.009   axin 1 isoform b 
USP8                  0.009   ubiquitin specific peptidase 8 
USP8                  0.009   ubiquitin specific peptidase 8 
USP8                  0.009   ubiquitin specific peptidase 8 
DPCR1                 0.009   diffuse panbronchiolitis critical region 1 protein ...
SLC17A1               0.009   solute carrier family 17 (sodium phosphate), member...
BRD4                  0.009   bromodomain-containing protein 4 isoform long 
FRMD4B                0.009   FERM domain containing 4B 
SURF6                 0.009   surfeit 6 
ZNF469                0.007   zinc finger protein 469 
AXIN1                 0.007   axin 1 isoform a 
ADAD1                 0.007   adenosine deaminase domain containing 1 (testis-spe...
ADAD1                 0.007   adenosine deaminase domain containing 1 (testis-spe...
ADAD1                 0.007   adenosine deaminase domain containing 1 (testis-spec...
PRUNE                 0.007   prune 
SMARCE1               0.007   SWI/SNF-related matrix-associated actin-dependent re...
STK11IP               0.007   LKB1 interacting protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press