Search of human proteins with 239750850

Search of human proteins with 239750850

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750850 PREDICTED: hypothetical protein XP_002347579 [Homo
sapiens]
         (143 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750850 PREDICTED: hypothetical protein XP_002347579 [Homo ...   294   1e-80
gi|239745213 PREDICTED: hypothetical protein XP_002343410 [Homo ...   294   1e-80
gi|239756315 PREDICTED: hypothetical protein [Homo sapiens]           291   2e-79
gi|239750960 PREDICTED: hypothetical protein XP_002347618 [Homo ...    30   0.90 
gi|239745366 PREDICTED: hypothetical protein XP_002343448 [Homo ...    30   0.90 
gi|223890203 zinc finger and BTB domain containing 22 [Homo sapi...    29   1.2  
gi|223890199 zinc finger and BTB domain containing 22 [Homo sapi...    29   1.2  
gi|45433501 elastin microfibril interfacer 3 [Homo sapiens]            29   1.2  
gi|122937195 plasma membrane associated protein, S3-12 [Homo sap...    29   1.5  
gi|148596990 cutC copper transporter homolog [Homo sapiens]            29   1.5  
gi|83715964 high-mobility group 20B [Homo sapiens]                     28   2.6  
gi|156104891 general transcription factor IIF, polypeptide 1, 74...    28   3.4  
gi|111548650 family with sequence similarity 170, member A [Homo...    28   3.4  
gi|22094125 zinc finger protein 28 [Homo sapiens]                      28   3.4  
gi|226053185 paternally expressed 3 isoform 3 [Homo sapiens]           27   4.4  
gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens]           27   4.4  
gi|226053148 paternally expressed 3 isoform 2 [Homo sapiens]           27   4.4  
gi|226053126 paternally expressed 3 isoform 1 [Homo sapiens]           27   4.4  
gi|33354285 paternally expressed 3 isoform 1 [Homo sapiens]            27   4.4  
gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]            27   4.4  
gi|6754472 kinesin family member 23 isoform 2 [Homo sapiens]           27   5.8  
gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens]          27   5.8  
gi|119220598 apolipoprotein B48 receptor [Homo sapiens]                27   5.8  
gi|229577391 pyridine nucleotide-disulphide oxidoreductase domai...    27   7.6  
gi|169201839 PREDICTED: similar to hCG2038970 [Homo sapiens]           27   7.6  
gi|169201482 PREDICTED: similar to hCG2038970 [Homo sapiens]           27   7.6  
gi|239744229 PREDICTED: similar to hCG2038970 [Homo sapiens]           27   7.6  
gi|108389176 tRNA splicing endonuclease 54 homolog [Homo sapiens]      27   7.6  
gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo...    27   7.6  
gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo...    27   7.6  

>gi|239750850 PREDICTED: hypothetical protein XP_002347579 [Homo
           sapiens]
          Length = 143

 Score =  294 bits (753), Expect = 1e-80
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60
           MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV
Sbjct: 1   MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60

Query: 61  AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120
           AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF
Sbjct: 61  AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120

Query: 121 YRQVRVSLGAELLRVGLQGHWSH 143
           YRQVRVSLGAELLRVGLQGHWSH
Sbjct: 121 YRQVRVSLGAELLRVGLQGHWSH 143


>gi|239745213 PREDICTED: hypothetical protein XP_002343410 [Homo
           sapiens]
          Length = 143

 Score =  294 bits (753), Expect = 1e-80
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60
           MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV
Sbjct: 1   MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60

Query: 61  AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120
           AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF
Sbjct: 61  AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120

Query: 121 YRQVRVSLGAELLRVGLQGHWSH 143
           YRQVRVSLGAELLRVGLQGHWSH
Sbjct: 121 YRQVRVSLGAELLRVGLQGHWSH 143


>gi|239756315 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 143

 Score =  291 bits (744), Expect = 2e-79
 Identities = 142/143 (99%), Positives = 142/143 (99%)

Query: 1   MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60
           MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV
Sbjct: 1   MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGV 60

Query: 61  AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120
           AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF
Sbjct: 61  AARVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGF 120

Query: 121 YRQVRVSLGAELLRVGLQGHWSH 143
           YRQVRVSL AELLRVGLQGHWSH
Sbjct: 121 YRQVRVSLVAELLRVGLQGHWSH 143


>gi|239750960 PREDICTED: hypothetical protein XP_002347618 [Homo
          sapiens]
          Length = 100

 Score = 29.6 bits (65), Expect = 0.90
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 7  PSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFP 42
          P +    S    P   DA++GWA+ R +G     FP
Sbjct: 28 PEKAKSQSAAARPGRADAARGWAAARTQGQECAVFP 63


>gi|239745366 PREDICTED: hypothetical protein XP_002343448 [Homo
          sapiens]
          Length = 100

 Score = 29.6 bits (65), Expect = 0.90
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 7  PSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFP 42
          P +    S    P   DA++GWA+ R +G     FP
Sbjct: 28 PEKAKSQSAAARPGRADAARGWAAARTQGQECAVFP 63


>gi|223890203 zinc finger and BTB domain containing 22 [Homo
           sapiens]
          Length = 634

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 20/117 (17%)

Query: 4   GRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPA----FPRAQVSQWSQVKKE--VK 57
           G G   GSG +  +AP +  +++  AS RA    +P+    F   + + +S   +E    
Sbjct: 170 GAGVPSGSGGT--VAPATMGSARSHASSRASENQSPSSSNYFSPRESTDFSSSSQEAFAA 227

Query: 58  TGVAARVRRQGG-------VLQGGFEEVKEPVRGVIKVDRAC-QGGSISGETTPGSG 106
           + V +  RR GG       V  GG    K     +++ D  C  GG   G   PG+G
Sbjct: 228 SAVGSGERRGGGPVFPAPVVGSGGATSGKL----LLEADELCDDGGDGRGAVVPGAG 280


>gi|223890199 zinc finger and BTB domain containing 22 [Homo
           sapiens]
          Length = 634

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 20/117 (17%)

Query: 4   GRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPA----FPRAQVSQWSQVKKE--VK 57
           G G   GSG +  +AP +  +++  AS RA    +P+    F   + + +S   +E    
Sbjct: 170 GAGVPSGSGGT--VAPATMGSARSHASSRASENQSPSSSNYFSPRESTDFSSSSQEAFAA 227

Query: 58  TGVAARVRRQGG-------VLQGGFEEVKEPVRGVIKVDRAC-QGGSISGETTPGSG 106
           + V +  RR GG       V  GG    K     +++ D  C  GG   G   PG+G
Sbjct: 228 SAVGSGERRGGGPVFPAPVVGSGGATSGKL----LLEADELCDDGGDGRGAVVPGAG 280


>gi|45433501 elastin microfibril interfacer 3 [Homo sapiens]
          Length = 766

 Score = 29.3 bits (64), Expect = 1.2
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 13/88 (14%)

Query: 60  VAARVRRQGGVLQGGFEEVKEPVRG-----VIKVDRACQGGSISGETTPGSGCGYKHRML 114
           V  R+ R  G L  GFE+  + V+      V +V R C+ G  +            H+ L
Sbjct: 304 VDRRLHRLWGSLLDGFEQKLQGVQSECDLRVQEVRRQCEEGQAASRRL--------HQSL 355

Query: 115 IGREGFYRQVRVSLGAELLRVGLQGHWS 142
            GRE   RQ    LG++L  + + G  S
Sbjct: 356 DGRELALRQELSQLGSQLQGLSVSGRGS 383


>gi|122937195 plasma membrane associated protein, S3-12 [Homo
           sapiens]
          Length = 1357

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 47  SQWSQVKKEVKTGVAARVRRQGGVLQGGFEEVKEPVRGVIKV 88
           S+ S+ K  V +GVA+ V    GV+QGG +  +  + G  +V
Sbjct: 83  SKMSRAKDAVSSGVASVVDVAKGVVQGGLDTTRSALTGTKEV 124


>gi|148596990 cutC copper transporter homolog [Homo sapiens]
          Length = 273

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 30 SGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVRRQGG 69
          SG +EGGTTP+    QV     VK+ V+  V   +R +GG
Sbjct: 53 SGLSEGGTTPSMGVLQV-----VKQSVQIPVFVMIRPRGG 87


>gi|83715964 high-mobility group 20B [Homo sapiens]
          Length = 317

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 4  GRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAAR 63
          G GP  G   S E  P+     +GW  G+      P  P+A V+ + +   E +  +  R
Sbjct: 35 GEGPRAGEKGSHEEEPVKK---RGWPKGKKRKKILPNGPKAPVTGYVRFLNERREQIRTR 91


>gi|156104891 general transcription factor IIF, polypeptide 1, 74kDa
           [Homo sapiens]
          Length = 517

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 15/74 (20%)

Query: 33  AEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGFEEVKEPVRGVIKVDRAC 92
           AEGG+T +  RA  S+  Q K+  +   A R+R   G      +   +P           
Sbjct: 392 AEGGSTSSTLRAAASKLEQGKRVSEMPAAKRLRLDTGPQSLSGKSTPQPP---------- 441

Query: 93  QGGSISGETTPGSG 106
                SG+TTP SG
Sbjct: 442 -----SGKTTPNSG 450


>gi|111548650 family with sequence similarity 170, member A [Homo
           sapiens]
          Length = 329

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 7/127 (5%)

Query: 3   AGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAA 62
           A +G          L P S   +KGW+ G  E  +T  +     S  S  +K + +G+  
Sbjct: 19  AEKGGGMSKSQEDALQPGSTRVAKGWSQGVGEVTSTSEY----CSCVSSSRKLIHSGI-Q 73

Query: 63  RVRRQGGVLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREGFYR 122
           R+ R     Q    +V+E      +          S +T   S C  K     G + +Y 
Sbjct: 74  RIHRDSPQPQSPLAQVQERGETPPRSQHVSLSSYSSYKTCVSSLCVNKEER--GMKIYYM 131

Query: 123 QVRVSLG 129
           QV+++ G
Sbjct: 132 QVQMNKG 138


>gi|22094125 zinc finger protein 28 [Homo sapiens]
          Length = 868

 Score = 27.7 bits (60), Expect = 3.4
 Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 3   AGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFP--RAQVSQWSQVKKE----- 55
           AGRGP+ G+ ++  L       S+   + + + G  P  P  RA  S+ + + +E     
Sbjct: 27  AGRGPTVGTPATLALPARGRPRSRNGLASKGQRGAAPTGPGHRALPSRDTALPQERNKKL 86

Query: 56  --VKTGVAARVRRQGGVLQG 73
             V TG+  +   QG V  G
Sbjct: 87  EAVGTGIEPKAMSQGLVTFG 106


>gi|226053185 paternally expressed 3 isoform 3 [Homo sapiens]
          Length = 1464

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 23  DASKGWASGRAEGGT--TPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGF 75
           D S+   SGRA   +  +  FPR     W  +    +  V  +   +G   +GGF
Sbjct: 197 DVSRSSKSGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGF 251


>gi|226053169 paternally expressed 3 isoform 1 [Homo sapiens]
          Length = 1588

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 23  DASKGWASGRAEGGT--TPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGF 75
           D S+   SGRA   +  +  FPR     W  +    +  V  +   +G   +GGF
Sbjct: 321 DVSRSSKSGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGF 375


>gi|226053148 paternally expressed 3 isoform 2 [Homo sapiens]
          Length = 1462

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 23  DASKGWASGRAEGGT--TPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGF 75
           D S+   SGRA   +  +  FPR     W  +    +  V  +   +G   +GGF
Sbjct: 195 DVSRSSKSGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGF 249


>gi|226053126 paternally expressed 3 isoform 1 [Homo sapiens]
          Length = 1588

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 23  DASKGWASGRAEGGT--TPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGF 75
           D S+   SGRA   +  +  FPR     W  +    +  V  +   +G   +GGF
Sbjct: 321 DVSRSSKSGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGF 375


>gi|33354285 paternally expressed 3 isoform 1 [Homo sapiens]
          Length = 1588

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 23  DASKGWASGRAEGGT--TPAFPRAQVSQWSQVKKEVKTGVAARVRRQGGVLQGGF 75
           D S+   SGRA   +  +  FPR     W  +    +  V  +   +G   +GGF
Sbjct: 321 DVSRSSKSGRARESSDRSQRFPRMSDDNWKDISLNKRESVIQQRVYEGNAFRGGF 375


>gi|239756028 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 25/105 (23%), Positives = 33/105 (31%), Gaps = 22/105 (20%)

Query: 7   PSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVRR 66
           P  G+   C+  P S     GW S  A  G  P                   G    +R 
Sbjct: 98  PRGGASPQCDGGPKSQGGKSGWLSVPASRGVAP------------------PGAMGILRA 139

Query: 67  QGGVLQGGFEEVKE----PVRGVIKVDRACQGGSISGETTPGSGC 107
           +GG   G    +      P    + V RA  G  +  E+ P  GC
Sbjct: 140 RGGRGTGSQSPLPASLGVPPPPAMGVQRARGGRGVGSESPPRWGC 184


>gi|6754472 kinesin family member 23 isoform 2 [Homo sapiens]
          Length = 856

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 8   SQGSGSSCELAPISN--DASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVR 65
           ++G G S +   I      S   +  R      PA P    S+W+ V  E +  VA  + 
Sbjct: 779 TRGGGQSVQFTDIETLKQESPNGSRKRRSSTVAPAQPDGAESEWTDV--ETRCSVAVEM- 835

Query: 66  RQGGVLQGGFEEVKEPVR 83
           R G  L  G++   +P R
Sbjct: 836 RAGSQLGPGYQHHAQPKR 853


>gi|20143967 kinesin family member 23 isoform 1 [Homo sapiens]
          Length = 960

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 8   SQGSGSSCELAPISN--DASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAARVR 65
           ++G G S +   I      S   +  R      PA P    S+W+ V  E +  VA  + 
Sbjct: 883 TRGGGQSVQFTDIETLKQESPNGSRKRRSSTVAPAQPDGAESEWTDV--ETRCSVAVEM- 939

Query: 66  RQGGVLQGGFEEVKEPVR 83
           R G  L  G++   +P R
Sbjct: 940 RAGSQLGPGYQHHAQPKR 957


>gi|119220598 apolipoprotein B48 receptor [Homo sapiens]
          Length = 1088

 Score = 26.9 bits (58), Expect = 5.8
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 4/68 (5%)

Query: 3   AGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQVKKEVKTGVAA 62
           A  G   G+ S  E A I++    G ASG  E GT      A    W+   KE    +  
Sbjct: 322 ASGGEEAGTASGGEEAGIASGGEAGTASGGEEAGTASGGDEA----WTTSGKEEADLLGV 377

Query: 63  RVRRQGGV 70
           R    G V
Sbjct: 378 RQTEYGAV 385


>gi|229577391 pyridine nucleotide-disulphide oxidoreductase domain 2
           [Homo sapiens]
          Length = 581

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 70  VLQGGFEEVKEPVRGVIKVDRACQGGSISGETTPGSGCGYKHRMLIGREG 119
           VL   FE   EP++  +  D     G+++   TPGSG    H ++ G EG
Sbjct: 230 VLDQWFES--EPLKATLATDAVI--GAMTSPHTPGSGYVLLHHVMGGLEG 275


>gi|169201839 PREDICTED: similar to hCG2038970 [Homo sapiens]
          Length = 915

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 1   MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQ 51
           MN G  P + SG S      S   S+G + G     +    PR QVS W Q
Sbjct: 112 MNDGSLPVRSSGLS------SGTGSEGGSWGHMTAASEGRAPRIQVSSWWQ 156


>gi|169201482 PREDICTED: similar to hCG2038970 [Homo sapiens]
          Length = 821

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 1   MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQ 51
           MN G  P + SG S      S   S+G + G     +    PR QVS W Q
Sbjct: 112 MNDGSLPVRSSGLS------SGTGSEGGSWGHMTAASEGRAPRIQVSSWWQ 156


>gi|239744229 PREDICTED: similar to hCG2038970 [Homo sapiens]
          Length = 904

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 6/51 (11%)

Query: 1   MNAGRGPSQGSGSSCELAPISNDASKGWASGRAEGGTTPAFPRAQVSQWSQ 51
           MN G  P + SG S      S   S+G + G     +    PR QVS W Q
Sbjct: 112 MNDGSLPVRSSGLS------SGTGSEGGSWGHMTAASEGRAPRIQVSSWWQ 156


>gi|108389176 tRNA splicing endonuclease 54 homolog [Homo sapiens]
          Length = 526

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 20/47 (42%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 1   MNAGRGPSQGSGSSCELAPISNDASKG----WASGRAEGGTTPAFPR 43
           M    GP Q  GS   L P    A +G    W SGRAE G T A  R
Sbjct: 251 MKGPGGPFQLLGS---LGPSPGPAREGVGCSWESGRAENGVTGAGKR 294


>gi|213972636 tumor protein p53 binding protein 1 isoform 1 [Homo
            sapiens]
          Length = 1977

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 7    PSQGSGSSCELAPISNDASKGWASGRAEGGTT 38
            PSQ  GSS +L  IS+ +SK  +  R   GT+
Sbjct: 1294 PSQTGGSSGDLGDISSFSSKASSLHRTSSGTS 1325


>gi|213972634 tumor protein p53 binding protein 1 isoform 2 [Homo
            sapiens]
          Length = 1975

 Score = 26.6 bits (57), Expect = 7.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 7    PSQGSGSSCELAPISNDASKGWASGRAEGGTT 38
            PSQ  GSS +L  IS+ +SK  +  R   GT+
Sbjct: 1294 PSQTGGSSGDLGDISSFSSKASSLHRTSSGTS 1325


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,273,546
Number of Sequences: 37866
Number of extensions: 282355
Number of successful extensions: 577
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 49
length of query: 143
length of database: 18,247,518
effective HSP length: 92
effective length of query: 51
effective length of database: 14,763,846
effective search space: 752956146
effective search space used: 752956146
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.