Guide to the Human Genome
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Name: LOC100290523 Sequence: fasta or formatted (100aa) NCBI GI: 239750960
Description:

PREDICTED: hypothetical protein XP_002347618

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            21.0         21           3
 C cysteine            3.0          3           1
 D aspartate           2.0          2           1
 E glutamate           4.0          4           1
 F phenylalanine       1.0          1           1
 G glycine            10.0         10           2
 H histidine           2.0          2           1
 I isoleucine          1.0          1           1
 K lysine              3.0          3           1
 L leucine             3.0          3           2
 M methionine          1.0          1           1
 N asparagine          0.0          0           0
 P proline             8.0          8           1
 Q glutamine           6.0          6           2
 R arginine            9.0          9           1
 S serine             12.0         12           2
 T threonine           7.0          7           1
 V valine              4.0          4           1
 W tryptophan          2.0          2           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347618 
LOC100287360          1.000   PREDICTED: hypothetical protein XP_002343448 
ZNF205                0.056   zinc finger protein 205 
ZNF205                0.056   zinc finger protein 205 
LOC339742             0.056   PREDICTED: hypothetical protein 
ZNF516                0.045   zinc finger protein 516 
LOC100292513          0.045   PREDICTED: hypothetical protein 
LOC100290082          0.045   PREDICTED: hypothetical protein XP_002347925 
LOC100287331          0.045   PREDICTED: hypothetical protein XP_002344192 
ELN                   0.039   elastin isoform e precursor 
ELN                   0.039   elastin isoform d precursor 
ELN                   0.039   elastin isoform c precursor 
ELN                   0.039   elastin isoform b precursor 
ELN                   0.039   elastin isoform a precursor 
FBXO15                0.039   F-box protein 15 isoform 2 
HOXA13                0.034   homeobox A13 
CCDC96                0.034   coiled-coil domain containing 96 
LOC100291835          0.028   PREDICTED: hypothetical protein XP_002346266 
LOC100292278          0.028   PREDICTED: hypothetical protein 
LOC100291291          0.028   PREDICTED: hypothetical protein XP_002347579 
LOC100287250          0.028   PREDICTED: hypothetical protein XP_002344493 
LOC100289356          0.028   PREDICTED: hypothetical protein XP_002343410 
FAM48B1               0.028   hypothetical protein LOC100130302 
CCDC88C               0.028   DVL-binding protein DAPLE 
RCOR1                 0.022   REST corepressor 1 
MXRA7                 0.022   transmembrane anchor protein 1 isoform 3 
MXRA7                 0.022   transmembrane anchor protein 1 isoform 2 
MXRA7                 0.022   transmembrane anchor protein 1 isoform 1 
LOC400553             0.022   PREDICTED: FLJ44904 protein 
RAI1                  0.017   retinoic acid induced 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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