Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291291 Sequence: fasta or formatted (143aa) NCBI GI: 239750850
Description:

PREDICTED: hypothetical protein XP_002347579

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         11           2
 C cysteine            2.1          3           1
 D aspartate           1.4          2           1
 E glutamate           6.3          9           2
 F phenylalanine       2.1          3           1
 G glycine            17.5         25           2
 H histidine           2.1          3           1
 I isoleucine          2.8          4           1
 K lysine              4.9          7           2
 L leucine             4.9          7           2
 M methionine          1.4          2           1
 N asparagine          1.4          2           1
 P proline             4.2          6           1
 Q glutamine           6.3          9           1
 R arginine            9.1         13           2
 S serine              9.8         14           2
 T threonine           3.5          5           2
 V valine              9.1         13           1
 W tryptophan          2.1          3           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347579 
LOC100289356          1.000   PREDICTED: hypothetical protein XP_002343410 
LOC100292278          0.989   PREDICTED: hypothetical protein 
LOC100290523          0.019   PREDICTED: hypothetical protein XP_002347618 
LOC100287360          0.019   PREDICTED: hypothetical protein XP_002343448 
ZBTB22                0.015   zinc finger and BTB domain containing 22 
ZBTB22                0.015   zinc finger and BTB domain containing 22 
EMILIN3               0.015   elastin microfibril interfacer 3 
KIAA1881              0.015   plasma membrane associated protein, S3-12 
CUTC                  0.015   cutC copper transporter homolog 
HMG20B                0.011   high-mobility group 20B 
GTF2F1                0.011   general transcription factor IIF, polypeptide 1, 74...
FAM170A               0.011   family with sequence similarity 170, member A [Homo...
ZFP28                 0.011   zinc finger protein 28 
PEG3                  0.007   paternally expressed 3 isoform 3 
PEG3                  0.007   paternally expressed 3 isoform 1 
PEG3                  0.007   paternally expressed 3 isoform 2 
PEG3                  0.007   paternally expressed 3 isoform 1 
PEG3                  0.007   paternally expressed 3 isoform 1 
LOC100134283          0.007   PREDICTED: hypothetical protein 
KIF23                 0.007   kinesin family member 23 isoform 2 
KIF23                 0.007   kinesin family member 23 isoform 1 
APOB48R               0.007   apolipoprotein B48 receptor 
PYROXD2               0.007   pyridine nucleotide-disulphide oxidoreductase domai...
LOC100129103          0.007   PREDICTED: similar to hCG2038970 
LOC100129103          0.007   PREDICTED: similar to hCG2038970 
LOC100129103          0.007   PREDICTED: similar to hCG2038970 
TSEN54                0.007   tRNA splicing endonuclease 54 homolog 
TP53BP1               0.007   tumor protein p53 binding protein 1 isoform 1 [Homo...
TP53BP1               0.007   tumor protein p53 binding protein 1 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press