Guide to the Human Genome
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Name: LOC100290086 Sequence: fasta or formatted (196aa) NCBI GI: 239750538
Description:

PREDICTED: hypothetical protein XP_002347438

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         18           2
 C cysteine            3.1          6           1
 D aspartate           2.6          5           1
 E glutamate          11.7         23           2
 F phenylalanine       3.1          6           2
 G glycine             5.1         10           2
 H histidine           6.1         12           2
 I isoleucine          0.5          1           1
 K lysine              4.6          9           2
 L leucine             7.7         15           2
 M methionine          1.5          3           1
 N asparagine          2.6          5           1
 P proline            10.7         21           2
 Q glutamine           4.1          8           1
 R arginine            7.1         14           2
 S serine             11.7         23           3
 T threonine           4.6          9           1
 V valine              2.0          4           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347438 
LOC100292155          1.000   PREDICTED: similar to hCG1790963 
LOC100288130          0.984   PREDICTED: hypothetical protein XP_002343283 
KIAA0802              0.279   hypothetical protein LOC23255 
TNKS1BP1              0.047   tankyrase 1-binding protein 1 
SMAD6                 0.034   SMAD family member 6 isoform 1 
SCAF1                 0.031   SR-related CTD-associated factor 1 
SMAD9                 0.031   SMAD family member 9 isoform b 
SHANK1                0.031   SH3 and multiple ankyrin repeat domains 1 
SMAD9                 0.028   SMAD family member 9 isoform a 
DPCR1                 0.028   diffuse panbronchiolitis critical region 1 protein ...
RERE                  0.026   atrophin-1 like protein isoform b 
RERE                  0.026   atrophin-1 like protein isoform a 
RERE                  0.026   atrophin-1 like protein isoform a 
MICALL2               0.026   MICAL-like 2 isoform 1 
DBX1                  0.026   developing brain homeobox 1 
ANKRD57               0.026   ankyrin repeat domain 57 
DLX3                  0.023   distal-less homeobox 3 
MLL4                  0.023   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100294236          0.023   PREDICTED: similar to diffuse panbronchiolitis crit...
C6orf222              0.023   hypothetical protein LOC389384 
MLL2                  0.021   myeloid/lymphoid or mixed-lineage leukemia 2 
NACA                  0.021   nascent polypeptide-associated complex alpha subuni...
LRRC37A3              0.021   leucine rich repeat containing 37, member A3 
KIAA0408              0.021   hypothetical protein LOC9729 
LOC100294335          0.021   PREDICTED: similar to c114 SLIT-like testicular pro...
LOC100294335          0.021   PREDICTED: similar to c114 SLIT-like testicular pro...
WIPF1                 0.021   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.021   WAS/WASL interacting protein family, member 1 
PPRC1                 0.021   peroxisome proliferator-activated receptor gamma, co...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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