Guide to the Human Genome
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Name: KIAA0408 Sequence: fasta or formatted (694aa) NCBI GI: 59806363
Description:

hypothetical protein LOC9729

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         27           2
 C cysteine            2.4         17           1
 D aspartate           5.0         35           1
 E glutamate           8.2         57           2
 F phenylalanine       2.3         16           1
 G glycine             4.0         28           2
 H histidine           3.0         21           1
 I isoleucine          4.0         28           2
 K lysine              8.4         58           2
 L leucine             6.5         45           2
 M methionine          2.7         19           1
 N asparagine          6.6         46           2
 P proline             6.5         45           3
 Q glutamine           4.9         34           2
 R arginine            6.2         43           2
 S serine             12.0         83           3
 T threonine           5.8         40           2
 V valine              3.9         27           2
 W tryptophan          2.2         15           1
 Y tyrosine            1.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC9729 
KIAA0802              0.020   hypothetical protein LOC23255 
C20orf117             0.012   hypothetical protein LOC140710 
KIF20B                0.011   M-phase phosphoprotein 1 
LRRIQ1                0.011   leucine-rich repeats and IQ motif containing 1 isof...
LRRIQ1                0.011   leucine-rich repeats and IQ motif containing 1 isof...
LOC283685             0.009   PREDICTED: golgi autoantigen, golgin subfamily a-li...
PDE4DIP               0.009   phosphodiesterase 4D interacting protein isoform 2 [...
PDE4DIP               0.009   phosphodiesterase 4D interacting protein isoform 1 ...
EEA1                  0.009   early endosome antigen 1, 162kD 
TXLNA                 0.009   taxilin 
WDR60                 0.009   WD repeat domain 60 
CCDC73                0.009   sarcoma antigen NY-SAR-79 
LOC727832             0.008   golgi autoantigen, golgin subfamily a-like 
TP53BP1               0.008   tumor protein p53 binding protein 1 isoform 1 [Homo...
TP53BP1               0.008   tumor protein p53 binding protein 1 isoform 2 [Homo...
TP53BP1               0.008   tumor protein p53 binding protein 1 isoform 3 
LRSAM1                0.008   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.008   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.008   leucine rich repeat and sterile alpha motif containi...
C6orf97               0.008   hypothetical protein LOC80129 
LOC100133220          0.008   PREDICTED: hypothetical protein 
LOC653061             0.008   PREDICTED: similar to Golgin subfamily A member 8-l...
TTC3                  0.008   tetratricopeptide repeat domain 3 
TTC3                  0.008   tetratricopeptide repeat domain 3 
IFT74                 0.007   coiled-coil domain containing 2 isoform a 
IFT74                 0.007   coiled-coil domain containing 2 isoform a 
IFT74                 0.007   coiled-coil domain containing 2 isoform a 
LOC651807             0.007   PREDICTED: hypothetical protein 
CCDC88A               0.007   coiled-coil domain containing 88A isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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