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Search of human proteins with 239750466
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750466 PREDICTED: hypothetical protein [Homo sapiens]
(351 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750466 PREDICTED: hypothetical protein [Homo sapiens] 742 0.0
gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo ... 740 0.0
gi|239755939 PREDICTED: hypothetical protein [Homo sapiens] 539 e-153
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 35 0.13
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 34 0.17
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens] 34 0.17
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens] 34 0.17
gi|169169054 PREDICTED: hypothetical protein [Homo sapiens] 33 0.38
gi|169168706 PREDICTED: hypothetical protein [Homo sapiens] 33 0.38
gi|169169649 PREDICTED: hypothetical protein [Homo sapiens] 33 0.38
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 33 0.50
gi|197333868 T-box 2 [Homo sapiens] 32 0.65
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 32 0.65
gi|56676337 transmembrane protein 28 [Homo sapiens] 32 0.65
gi|188536004 zinc finger protein 469 [Homo sapiens] 32 0.85
gi|30425428 deltex homolog 3 [Homo sapiens] 32 0.85
gi|209977097 tripartite motif-containing 66 [Homo sapiens] 32 1.1
gi|19924099 synapsin I isoform Ia [Homo sapiens] 32 1.1
gi|19924097 synapsin I isoform Ib [Homo sapiens] 32 1.1
gi|46447823 nuclear factor of activated T-cells, cytoplasmic, ca... 32 1.1
gi|116875765 tight junction protein 1 isoform b [Homo sapiens] 31 1.5
gi|116875767 tight junction protein 1 isoform a [Homo sapiens] 31 1.5
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239756849 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo ... 31 1.5
gi|239747516 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 31 1.5
gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo ... 31 1.5
gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo ... 31 1.5
>gi|239750466 PREDICTED: hypothetical protein [Homo sapiens]
Length = 351
Score = 742 bits (1916), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60
MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE
Sbjct: 1 MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60
Query: 61 PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120
PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG
Sbjct: 61 PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120
Query: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180
VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL
Sbjct: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180
Query: 181 SVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240
SVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVLE
Sbjct: 181 SVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240
Query: 241 PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES 300
PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES
Sbjct: 241 PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES 300
Query: 301 ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH 351
ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH
Sbjct: 301 ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH 351
>gi|239744760 PREDICTED: hypothetical protein XP_002343262 [Homo
sapiens]
Length = 351
Score = 740 bits (1910), Expect = 0.0
Identities = 350/351 (99%), Positives = 350/351 (99%)
Query: 1 MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60
MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE
Sbjct: 1 MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60
Query: 61 PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120
PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG
Sbjct: 61 PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120
Query: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180
VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL
Sbjct: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180
Query: 181 SVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240
SVECVKSLPLHGPALRRQNDKHMSWGR LRATAQMPPNTFLCARLSFSPPQASRLKHVLE
Sbjct: 181 SVECVKSLPLHGPALRRQNDKHMSWGRRLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240
Query: 241 PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES 300
PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES
Sbjct: 241 PARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPFHLSTRWILLMFWTPVNTVKSPES 300
Query: 301 ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH 351
ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH
Sbjct: 301 ELLSYRHSREQHLRFMKARSPRVVNAKVMMSFRVMGLFSIITAAPCKAKGH 351
>gi|239755939 PREDICTED: hypothetical protein [Homo sapiens]
Length = 313
Score = 539 bits (1388), Expect = e-153
Identities = 256/270 (94%), Positives = 257/270 (95%)
Query: 1 MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60
MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE
Sbjct: 1 MGSHHTGTAVFHLGGEEAWAQRLNGTGQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDE 60
Query: 61 PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120
PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG
Sbjct: 61 PLPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVREKRG 120
Query: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180
VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL
Sbjct: 121 VGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQL 180
Query: 181 SVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240
SVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVLE
Sbjct: 181 SVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVLE 240
Query: 241 PARDLLPPGHKPWPGPPSPLPGDRGPRLSP 270
PARDLLPPGHK P P R R+ P
Sbjct: 241 PARDLLPPGHKARAPIPLRSPTHRNARVLP 270
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 34.7 bits (78), Expect = 0.13
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 68 SSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAG 113
SS +P C KP MC CVP C C++ G GCG+ G S G
Sbjct: 128 SSCCVPVCCCKP--MCCCVPA--CSCSS----CGKGGCGSCGCSKG 165
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 34.3 bits (77), Expect = 0.17
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 224 RLSFSPPQASRLKHVLEPARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPF 277
R S PP+ +R H+L P R PG P PGDR L P SPF
Sbjct: 52 RASLPPPRPARPSHLLWPKR---------LPGRPGRAPGDRRAALPPPGTRSPF 96
>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 34.3 bits (77), Expect = 0.17
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 224 RLSFSPPQASRLKHVLEPARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPF 277
R S PP+ +R H+L P R PG P PGDR L P SPF
Sbjct: 52 RASLPPPRPARPSHLLWPKR---------LPGRPGRAPGDRRAALPPPGTRSPF 96
>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 34.3 bits (77), Expect = 0.17
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 224 RLSFSPPQASRLKHVLEPARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSPF 277
R S PP+ +R H+L P R PG P PGDR L P SPF
Sbjct: 52 RASLPPPRPARPSHLLWPKR---------LPGRPGRAPGDRRAALPPPGTRSPF 96
>gi|169169054 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 33.1 bits (74), Expect = 0.38
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 111 SAGRVREKRGVGAGGPVRPSGQAWLAHGVLR-TLTYLAPDLADDRDQQQDAAQRQEDVLG 169
+ G R R + A P+ P G + R T YL L + D +DAA+ + +G
Sbjct: 25 ATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVYLGHALGEAVDLLRDAAELAVNAVG 84
Query: 170 IVHHLGHQH-------QLSVECVKSLPLHGPALRRQN---DKHMSWGRTLRATAQMPPNT 219
+ HLG+ H QL +E +++ L R+N H S GR A Q
Sbjct: 85 MA-HLGYDHGLRHAQLQLGIEVIQTRLLLLERDSRENRDPGAHASSGRCEIALQQRTEEA 143
Query: 220 FLCARLSFSPPQASRLKHVLEPARDL 245
PP ++L H+LE R L
Sbjct: 144 V------GHPPSQAQLPHLLEHIRHL 163
>gi|169168706 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 33.1 bits (74), Expect = 0.38
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 111 SAGRVREKRGVGAGGPVRPSGQAWLAHGVLR-TLTYLAPDLADDRDQQQDAAQRQEDVLG 169
+ G R R + A P+ P G + R T YL L + D +DAA+ + +G
Sbjct: 25 ATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVYLGHALGEAVDLLRDAAELAVNAVG 84
Query: 170 IVHHLGHQH-------QLSVECVKSLPLHGPALRRQN---DKHMSWGRTLRATAQMPPNT 219
+ HLG+ H QL +E +++ L R+N H S GR A Q
Sbjct: 85 MA-HLGYDHGLRHAQLQLGIEVIQTRLLLLERDSRENRDPGAHASSGRCEIALQQRTEEA 143
Query: 220 FLCARLSFSPPQASRLKHVLEPARDL 245
PP ++L H+LE R L
Sbjct: 144 V------GHPPSQAQLPHLLEHIRHL 163
>gi|169169649 PREDICTED: hypothetical protein [Homo sapiens]
Length = 399
Score = 33.1 bits (74), Expect = 0.38
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 18/146 (12%)
Query: 111 SAGRVREKRGVGAGGPVRPSGQAWLAHGVLR-TLTYLAPDLADDRDQQQDAAQRQEDVLG 169
+ G R R + A P+ P G + R T YL L + D +DAA+ + +G
Sbjct: 25 ATGCTRRARLIWALLPLLPGGTGRVLIPCPRGTPVYLGHALGEAVDLLRDAAELAVNAVG 84
Query: 170 IVHHLGHQH-------QLSVECVKSLPLHGPALRRQN---DKHMSWGRTLRATAQMPPNT 219
+ HLG+ H QL +E +++ L R+N H S GR A Q
Sbjct: 85 MA-HLGYDHGLRHAQLQLGIEVIQTRLLLLERDSRENRDPGAHASSGRCEIALQQRTEEA 143
Query: 220 FLCARLSFSPPQASRLKHVLEPARDL 245
PP ++L H+LE R L
Sbjct: 144 V------GHPPSQAQLPHLLEHIRHL 163
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 32.7 bits (73), Expect = 0.50
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 13/83 (15%)
Query: 27 GQAHPRKGTQDPQPLWSGLWATWREGSRTVLVDEPLPTSPFSSSSIPECLHKPARMCVC- 85
GQ P + T P + + W E R +P P SP ++S+ + P + C
Sbjct: 1667 GQVSPFRETPVPPAM-----SPWPEDPRRASPPDPSP-SPSAASASERVVPSPLQFCAAT 1720
Query: 86 ------VPGRVCRCATGTWQLGG 102
VPGR+ CA+G +GG
Sbjct: 1721 PKHALPVPGRLPPCASGHAAVGG 1743
>gi|197333868 T-box 2 [Homo sapiens]
Length = 712
Score = 32.3 bits (72), Expect = 0.65
Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 4/97 (4%)
Query: 62 LPTSPFSSSSIPECLHKPARMCVCVPGRVCRCATGTWQLGGSGCGAGGLSAGRVRE---- 117
L SPF S+ P P ++ V +P TG G G + E
Sbjct: 606 LSRSPFLGSARPRLRFSPYQIPVTIPPSTSLLTTGLASEGSKAAGGNSREPSPLPELALR 665
Query: 118 KRGVGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDR 154
K G + G + PSG A A L+++ L L R
Sbjct: 666 KVGAPSRGALSPSGSAKEAANELQSIQRLVSGLESQR 702
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 32.3 bits (72), Expect = 0.65
Identities = 29/94 (30%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 180 LSVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVL 239
+SV SLP+ P TL A A P + A L+ S + L V
Sbjct: 1431 VSVPLSSSLPISVPT-------------TLPAPASAPLTIPISAPLTVSASGPALLTSVT 1477
Query: 240 EPARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTL 273
P ++P PGPPS P P S LTL
Sbjct: 1478 PPLAPVVPAA----PGPPSLAPSGASPSASALTL 1507
>gi|56676337 transmembrane protein 28 [Homo sapiens]
Length = 472
Score = 32.3 bits (72), Expect = 0.65
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 229 PPQASRLKHVLEPARDLLPPGHKPWPGPPSPLPGDRGPRLSPLTLLSP 276
PP + + P R +LP P PG PS PG GPR S LT +P
Sbjct: 80 PPWGAGRERQPVPPRAVLPLPPPP-PGEPSAPPGTCGPRYSNLTKAAP 126
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 32.0 bits (71), Expect = 0.85
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 194 ALRRQNDKHMSWGRTLRATAQMPPNTFLCARLSFSPPQASRLKHVLEPA--RDLLPPGHK 251
A + Q D+HM+ + LR Q P F R +P Q +R P+ R + PG
Sbjct: 3400 AKKEQFDRHMN--KHLRGGRQ--PFAFRGVRRPGAPGQKARALEGTLPSKRRRVAMPGSA 3455
Query: 252 PWPGPPSPLPGDRGPRLSPLTLLSPFHL 279
P PG P P P LS +L + HL
Sbjct: 3456 PGPGEDRPPPRGSSPILSEGSLPALLHL 3483
>gi|30425428 deltex homolog 3 [Homo sapiens]
Length = 347
Score = 32.0 bits (71), Expect = 0.85
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 242 ARDLLPPGHKPWPGPPSPLPGDRGPRL 268
A LLPPG + P PP PLP PRL
Sbjct: 127 AAPLLPPGARGLPPPPPPLPPPLPPRL 153
>gi|209977097 tripartite motif-containing 66 [Homo sapiens]
Length = 1216
Score = 31.6 bits (70), Expect = 1.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 224 RLSFSPPQASRLKHVLEPARDLLPPGHKPWPGPPSPLP 261
++ F Q +L H + + LPP P P PP PLP
Sbjct: 435 QVQFGHHQKLKLSHFQQQPQQQLPPPPPPLPHPPPPLP 472
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 229 PPQASRLKHVLEPARDLL---PPGHKPWPGPPSPLPGDRGP 266
PPQA+R V PA PPG + GPP PG GP
Sbjct: 560 PPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGP 600
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 229 PPQASRLKHVLEPARDLL---PPGHKPWPGPPSPLPGDRGP 266
PPQA+R V PA PPG + GPP PG GP
Sbjct: 560 PPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGP 600
>gi|46447823 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 2 interacting protein [Homo
sapiens]
Length = 419
Score = 31.6 bits (70), Expect = 1.1
Identities = 43/153 (28%), Positives = 54/153 (35%), Gaps = 37/153 (24%)
Query: 96 GTWQLGGSGCGAGGLSAGRVREKRGVGAGGPVRPSGQAWLAHGVLRTLTYLAPDLADDRD 155
G W GGSG G GG RG G RP Q + G TL ++ DL D D
Sbjct: 9 GRWS-GGSGAGRGG---------RGGWGGRGRRPRAQRSPSRG---TLDVVSVDLVTDSD 55
Query: 156 QQQDAAQRQEDVLGIVHHLGHQHQLSVECVKSLPLHGPALRRQNDKHMSWGRTLRATAQM 215
E++L + G ++ VE + GP R N S G R
Sbjct: 56 ---------EEILEVATARGAADEVEVEPPEP---PGPVASRDNSNSDSEGEDRRPAG-- 101
Query: 216 PPNTFLCARLSFSPPQASRLKHVLEPARDLLPP 248
PP P R + VL+P L P
Sbjct: 102 PPR----------EPVRRRRRLVLDPGEAPLVP 124
>gi|116875765 tight junction protein 1 isoform b [Homo sapiens]
Length = 1668
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 210 RATAQMPPNTFLCARLSFSPPQASRLKHVLEPAR----DLLPPGHKPWPGPPSPLPGDRG 265
R+ Q+PP F F P + L P+ + LP KP P PP+ +
Sbjct: 1117 RSYEQVPPQGFTSRAGHFEPLHGAAAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEED 1176
Query: 266 PRLSPLTLLS 275
P + P ++L+
Sbjct: 1177 PAMKPQSVLT 1186
>gi|116875767 tight junction protein 1 isoform a [Homo sapiens]
Length = 1748
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 210 RATAQMPPNTFLCARLSFSPPQASRLKHVLEPAR----DLLPPGHKPWPGPPSPLPGDRG 265
R+ Q+PP F F P + L P+ + LP KP P PP+ +
Sbjct: 1197 RSYEQVPPQGFTSRAGHFEPLHGAAAVPPLIPSSQHKPEALPSNTKPLPPPPTQTEEEED 1256
Query: 266 PRLSPLTLLS 275
P + P ++L+
Sbjct: 1257 PAMKPQSVLT 1266
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 31.2 bits (69), Expect = 1.5
Identities = 62/260 (23%), Positives = 89/260 (34%), Gaps = 21/260 (8%)
Query: 20 AQRLNGTGQAHPRKGTQD---PQPLWSGL-WATWREGSRTVLVDEPLPTSPFSSSSIPEC 75
A RL A G QD P+PLW L R G T F++S +
Sbjct: 111 APRLGPPRGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLG 170
Query: 76 LHKPARMCVCVPGRVCRCATGT--WQLGGSGCGAGGLSAGRVREKRGVGAGGPVRPSGQA 133
H+ G R G+ W G G S + + G GG +R SG A
Sbjct: 171 THRIGEGV----GGEKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPA 226
Query: 134 WLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQLSVECVKSLPLHGP 193
LR+ P L D+ ++ + ++ LG V L++ + P
Sbjct: 227 -TPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAA--SP 283
Query: 194 ALRRQNDKHMSWGRTLRATAQMPPN--TFLCARLSFSPPQASRLKHVLEPARDLLPPGHK 251
L+ + G AQ P L RL P+ S+ P+R P +
Sbjct: 284 CLQVAQQSFLELG------AQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQ 337
Query: 252 PWPGPPSPLPGDRGPRLSPL 271
GP +P+ GP PL
Sbjct: 338 LGRGPATPMLHGLGPVPPPL 357
>gi|239756849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 1.5
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 102 GSGCGAG-GLSAGRVREKRGVGAGGPVRPSGQAWLAH 137
G+G GAG G AGR ++ AGGP R G +WL H
Sbjct: 285 GAGAGAGVGTRAGRQGDRAPGEAGGP-RGIGNSWLPH 320
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 31.2 bits (69), Expect = 1.5
Identities = 62/260 (23%), Positives = 89/260 (34%), Gaps = 21/260 (8%)
Query: 20 AQRLNGTGQAHPRKGTQD---PQPLWSGL-WATWREGSRTVLVDEPLPTSPFSSSSIPEC 75
A RL A G QD P+PLW L R G T F++S +
Sbjct: 111 APRLGPPRGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLG 170
Query: 76 LHKPARMCVCVPGRVCRCATGT--WQLGGSGCGAGGLSAGRVREKRGVGAGGPVRPSGQA 133
H+ G R G+ W G G S + + G GG +R SG A
Sbjct: 171 THRIGEGV----GGEKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPA 226
Query: 134 WLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQLSVECVKSLPLHGP 193
LR+ P L D+ ++ + ++ LG V L++ + P
Sbjct: 227 -TPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAA--SP 283
Query: 194 ALRRQNDKHMSWGRTLRATAQMPPN--TFLCARLSFSPPQASRLKHVLEPARDLLPPGHK 251
L+ + G AQ P L RL P+ S+ P+R P +
Sbjct: 284 CLQVAQQSFLELG------AQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQ 337
Query: 252 PWPGPPSPLPGDRGPRLSPL 271
GP +P+ GP PL
Sbjct: 338 LGRGPATPMLHGLGPVPPPL 357
>gi|239751345 PREDICTED: hypothetical protein XP_002347810 [Homo
sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 1.5
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 102 GSGCGAG-GLSAGRVREKRGVGAGGPVRPSGQAWLAH 137
G+G GAG G AGR ++ AGGP R G +WL H
Sbjct: 285 GAGAGAGVGTRAGRQGDRAPGEAGGP-RGIGNSWLPH 320
>gi|239747516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 209
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 88 GRVCRCATGT--WQLGGSGCGAGGLSAG-----RVREKRGVGAGGPVRPSG 131
G CR + + W+ GG G G GG S G R+R G+G GG R G
Sbjct: 136 GPCCRSSLSSSRWEAGG-GAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGG 185
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 31.2 bits (69), Expect = 1.5
Identities = 62/260 (23%), Positives = 89/260 (34%), Gaps = 21/260 (8%)
Query: 20 AQRLNGTGQAHPRKGTQD---PQPLWSGL-WATWREGSRTVLVDEPLPTSPFSSSSIPEC 75
A RL A G QD P+PLW L R G T F++S +
Sbjct: 111 APRLGPPRGAVGAAGAQDFLNPRPLWPNLDLPGLRPGKITASARPSSQALQFANSRVSLG 170
Query: 76 LHKPARMCVCVPGRVCRCATGT--WQLGGSGCGAGGLSAGRVREKRGVGAGGPVRPSGQA 133
H+ G R G+ W G G S + + G GG +R SG A
Sbjct: 171 THRIGEGV----GGEKRQEAGSPGWNPGLGLARLGSYSTVCLAPELAFGLGGVLRVSGPA 226
Query: 134 WLAHGVLRTLTYLAPDLADDRDQQQDAAQRQEDVLGIVHHLGHQHQLSVECVKSLPLHGP 193
LR+ P L D+ ++ + ++ LG V L++ + P
Sbjct: 227 -TPELALRSRAVTPPSLGGGGDRGENREEGRDLCLGPVAKKPDPRALAISSRGAAA--SP 283
Query: 194 ALRRQNDKHMSWGRTLRATAQMPPN--TFLCARLSFSPPQASRLKHVLEPARDLLPPGHK 251
L+ + G AQ P L RL P+ S+ P+R P +
Sbjct: 284 CLQVAQQSFLELG------AQKTPGGGKNLGPRLCGKSPRGSQTARSSSPSRAWAPGWRQ 337
Query: 252 PWPGPPSPLPGDRGPRLSPL 271
GP +P+ GP PL
Sbjct: 338 LGRGPATPMLHGLGPVPPPL 357
>gi|239745844 PREDICTED: hypothetical protein XP_002343563 [Homo
sapiens]
Length = 329
Score = 31.2 bits (69), Expect = 1.5
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 102 GSGCGAG-GLSAGRVREKRGVGAGGPVRPSGQAWLAH 137
G+G GAG G AGR ++ AGGP R G +WL H
Sbjct: 285 GAGAGAGVGTRAGRQGDRAPGEAGGP-RGIGNSWLPH 320
>gi|239741394 PREDICTED: hypothetical protein XP_002342192 [Homo
sapiens]
Length = 209
Score = 31.2 bits (69), Expect = 1.5
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 88 GRVCRCATGT--WQLGGSGCGAGGLSAG-----RVREKRGVGAGGPVRPSG 131
G CR + + W+ GG G G GG S G R+R G+G GG R G
Sbjct: 136 GPCCRSSLSSSRWEAGG-GAGGGGGSRGPAAWDRIRVNGGLGGGGGCRGGG 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,668,669
Number of Sequences: 37866
Number of extensions: 1047442
Number of successful extensions: 5802
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 5545
Number of HSP's gapped (non-prelim): 400
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.