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Search of human proteins with 239749918
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749918 PREDICTED: hypothetical protein XP_002347213 [Homo
sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749918 PREDICTED: hypothetical protein XP_002347213 [Homo ... 246 3e-66
gi|239755437 PREDICTED: hypothetical protein [Homo sapiens] 191 2e-49
gi|239744221 PREDICTED: hypothetical protein XP_002343077 [Homo ... 191 2e-49
gi|122937424 one cut homeobox 3 [Homo sapiens] 38 0.002
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 35 0.018
gi|124107614 PR domain containing 13 [Homo sapiens] 33 0.069
gi|119395750 keratin 1 [Homo sapiens] 32 0.090
gi|52218860 olfactory receptor, family 11, subfamily H, member 6... 32 0.090
gi|55956899 keratin 9 [Homo sapiens] 32 0.15
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 32 0.15
gi|4502565 calpain, small subunit 1 [Homo sapiens] 31 0.26
gi|51599151 calpain, small subunit 1 [Homo sapiens] 31 0.26
gi|119395754 keratin 5 [Homo sapiens] 30 0.45
gi|109255251 loricrin [Homo sapiens] 30 0.45
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 30 0.45
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 30 0.45
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 30 0.45
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 30 0.58
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 30 0.58
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 30 0.58
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 30 0.58
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 30 0.58
gi|4505531 oxysterol binding protein [Homo sapiens] 30 0.58
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 29 0.76
gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens] 29 0.76
gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens] 29 0.76
gi|167466169 growth arrest-specific 1 [Homo sapiens] 29 0.76
gi|47132620 keratin 2 [Homo sapiens] 29 0.76
gi|48762934 alpha 2 type I collagen [Homo sapiens] 29 1.00
gi|169211258 PREDICTED: similar to hCG2036610 [Homo sapiens] 29 1.00
>gi|239749918 PREDICTED: hypothetical protein XP_002347213 [Homo
sapiens]
Length = 122
Score = 246 bits (628), Expect = 3e-66
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MAAYETSDPNLIALKPKPWEQSWVGQGSPRASLTLSDIFTGHTDTVIIVGSLLRALGSHN 60
MAAYETSDPNLIALKPKPWEQSWVGQGSPRASLTLSDIFTGHTDTVIIVGSLLRALGSHN
Sbjct: 1 MAAYETSDPNLIALKPKPWEQSWVGQGSPRASLTLSDIFTGHTDTVIIVGSLLRALGSHN 60
Query: 61 FFVAVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
FFVAVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG
Sbjct: 61 FFVAVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
Query: 121 RA 122
RA
Sbjct: 121 RA 122
>gi|239755437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 191 bits (484), Expect = 2e-49
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 27 GSPRASLTLSDIFTGHTDTVIIVGSLLRALGSHNFFVAVSLPGGGGSGADFSLLGAFLGL 86
GSPRASLTLSDIFTGHTDTVIIVGSLLRALGSHNFFVAVSLPGGGGSGADFSLLGAFLGL
Sbjct: 104 GSPRASLTLSDIFTGHTDTVIIVGSLLRALGSHNFFVAVSLPGGGGSGADFSLLGAFLGL 163
Query: 87 VALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSGRA 122
VALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSGRA
Sbjct: 164 VALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSGRA 199
>gi|239744221 PREDICTED: hypothetical protein XP_002343077 [Homo
sapiens]
Length = 199
Score = 191 bits (484), Expect = 2e-49
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 27 GSPRASLTLSDIFTGHTDTVIIVGSLLRALGSHNFFVAVSLPGGGGSGADFSLLGAFLGL 86
GSPRASLTLSDIFTGHTDTVIIVGSLLRALGSHNFFVAVSLPGGGGSGADFSLLGAFLGL
Sbjct: 104 GSPRASLTLSDIFTGHTDTVIIVGSLLRALGSHNFFVAVSLPGGGGSGADFSLLGAFLGL 163
Query: 87 VALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSGRA 122
VALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSGRA
Sbjct: 164 VALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSGRA 199
>gi|122937424 one cut homeobox 3 [Homo sapiens]
Length = 494
Score = 37.7 bits (86), Expect = 0.002
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 56 LGSHNFFVAVSLPGGGG-SGADFSLLGAFLGLVALLGGLGSCGRRS--HSSPGPAGSGG 111
LG +A LPGGGG +G+ + G+ GL+A LGGL + G GP GSGG
Sbjct: 252 LGRAEDALARGLPGGGGGTGSGGAGSGSAAGLLAPLGGLAAAGAHGPHGGGGGPGGSGG 310
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 34.7 bits (78), Expect = 0.018
Identities = 21/52 (40%), Positives = 24/52 (46%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
GGGG G S G G A +G +G S S GP GSGG G+G
Sbjct: 32 GGGGPGGSASGPGGTGGGKASVGAMGGGVGASSSGGGPGGSGGGGSGGPGAG 83
Score = 27.3 bits (59), Expect = 2.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
GGG G+ + +F GG G G S+ GP G+GG K S G
Sbjct: 8 GGGPGGSGRARTSSFAEPGG--GGGGGGGGPGGSASGPGGTGGGKASVGAMG 57
>gi|124107614 PR domain containing 13 [Homo sapiens]
Length = 707
Score = 32.7 bits (73), Expect = 0.069
Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 14/120 (11%)
Query: 6 TSDPNLIALKPKPWEQSWVGQGSPRASLTLSDIFTGHTDTVIIVGSLLRALGSHNFFVAV 65
+S P+ + P W Q G+ +L +S G + IVG +GS F+ V
Sbjct: 232 SSAPSATSPTPGKWGQPKKGKEQLDRALDMSGAARGQGHFLGIVGGSSAGVGSLAFYPGV 291
Query: 66 SL---PGGGGSGA-----------DFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGG 111
P G A S GA L L LLGG +CGR AG G
Sbjct: 292 RSAFKPAGLARAAAAAHGDPYREESSSKQGAGLALGRLLGGGRACGRPGSGENSAAGGAG 351
>gi|119395750 keratin 1 [Homo sapiens]
Length = 644
Score = 32.3 bits (72), Expect = 0.090
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPA-GSGGEKVSSSGSG 120
GGGG G+ S G+ G GG G GR S+ S G + GSGG S G G
Sbjct: 521 GGGGYGSGGSSYGSGGGSYGSGGG-GGGGRGSYGSGGSSYGSGGGSYGSGGGG 572
Score = 26.2 bits (56), Expect = 6.5
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 69 GGGG------SGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSG 118
GGGG G+ + G G GG GS G S S GSGG SSG
Sbjct: 545 GGGGRGSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYRGGSGGGGGGSSG 600
>gi|52218860 olfactory receptor, family 11, subfamily H, member 6
[Homo sapiens]
Length = 330
Score = 32.3 bits (72), Expect = 0.090
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 44 DTVIIVGSLLRALGSHNFFV--AVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSH 101
+++II G L LGS+ + + +P G G FS G+ L +V+L G S
Sbjct: 221 NSMIIFGPFLSILGSYTLVIRAVLCIPSGAGRTKAFSTCGSHLMVVSLFYGTLMVMYVSP 280
Query: 102 SSPGPAG 108
+S PAG
Sbjct: 281 TSGNPAG 287
>gi|55956899 keratin 9 [Homo sapiens]
Length = 623
Score = 31.6 bits (70), Expect = 0.15
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 65 VSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
+ L G GGSG + G+ G GG GS G S GSGG SGSG
Sbjct: 473 IGLGGRGGSGGSYGR-GSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSG 527
Score = 30.8 bits (68), Expect = 0.26
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 66 SLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
S GGGG G FS + G + + G G G +S G +G GG SS G G
Sbjct: 36 SSSGGGGGGGRFSSSSGYGGGSSRVCGRGGGGSFGYSYGGGSG-GGFSASSLGGG 89
Score = 28.9 bits (63), Expect = 1.00
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
GGGGSG + GG GS G S G +GSGG G G
Sbjct: 498 GGGGSGGGYG------------GGSGSRGGSGGSYGGGSGSGGGSGGGYGGG 537
Score = 28.9 bits (63), Expect = 1.00
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 12/51 (23%)
Query: 70 GGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
GGGSG + GG GS G S G +G GGE S G G
Sbjct: 565 GGGSGGGYG------------GGSGSRGGSGGSHGGGSGFGGESGGSYGGG 603
Score = 27.7 bits (60), Expect = 2.2
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 70 GGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGS---GGEKVSSSGSG 120
GGGSG+ G + G GG G G +G GGE+ S SG G
Sbjct: 559 GGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGG 612
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 31.6 bits (70), Expect = 0.15
Identities = 25/68 (36%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 64 AVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSS-----------PGPAGSGGE 112
AV PGGGG GA + G L +RS SS PGP G G
Sbjct: 1350 AVGTPGGGGGGAVPGISAMSRG--DLSQRAKDLSKRSFSSQRPGMERQNRRPGPGGKAGS 1407
Query: 113 KVSSSGSG 120
SSSG G
Sbjct: 1408 SGSSSGGG 1415
>gi|4502565 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 30.8 bits (68), Expect = 0.26
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 61 FFVAVSLPGGGGSGADFSLLGAFLG--LVALLGGLGSCGRRSHSSPGPAGSGG 111
F V L GGGG G LG LG L L+ G G G G G GG
Sbjct: 2 FLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGG 54
Score = 25.8 bits (55), Expect = 8.4
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSG 110
GGGG G L GL++ GG G G G G G
Sbjct: 15 GGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGG 56
>gi|51599151 calpain, small subunit 1 [Homo sapiens]
Length = 268
Score = 30.8 bits (68), Expect = 0.26
Identities = 21/53 (39%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 61 FFVAVSLPGGGGSGADFSLLGAFLG--LVALLGGLGSCGRRSHSSPGPAGSGG 111
F V L GGGG G LG LG L L+ G G G G G GG
Sbjct: 2 FLVNSFLKGGGGGGGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGG 54
Score = 25.8 bits (55), Expect = 8.4
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSG 110
GGGG G L GL++ GG G G G G G
Sbjct: 15 GGGGGGLGGGLGNVLGGLISGAGGGGGGGGGGGGGGGGGGGG 56
>gi|119395754 keratin 5 [Homo sapiens]
Length = 590
Score = 30.0 bits (66), Expect = 0.45
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 58 SHNFFVAVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSS 117
S F +VS GGGG G G V+L G G G S S GS +S+S
Sbjct: 28 SRTSFTSVSRSGGGGGGG--------FGRVSLAGACGVGGYGSRSLYNLGGSKRISISTS 79
Query: 118 G 118
G
Sbjct: 80 G 80
>gi|109255251 loricrin [Homo sapiens]
Length = 312
Score = 30.0 bits (66), Expect = 0.45
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 65 VSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
V GGGG G G+ G GG GS G S S G +G GG G G
Sbjct: 17 VKTSGGGGGGG-----GSGGGGCGFFGGGGSGGGSSGSGCGYSGGGGYSGGGCGGG 67
Score = 29.6 bits (65), Expect = 0.58
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSGR 121
GGG SG G G + + GG CG S G GG V SGSG+
Sbjct: 246 GGGSSGCGGGSSGIGSGCI-ISGGGSVCGGGSSGG----GGGGSSVGGSGSGK 293
Score = 28.5 bits (62), Expect = 1.3
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
GGGG G G G V GG GS G S +G GG SSG G
Sbjct: 70 GGGGGGGIGGCGGGSGGSVKYSGGGGSSG--GGSGCFSSGGGGSGCFSSGGG 119
Score = 26.6 bits (57), Expect = 4.9
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 70 GGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSG 118
GGG G S G GG+G CG S S +G GG SG
Sbjct: 61 GGGCGGGSSGGGGG-------GGIGGCGGGSGGSVKYSGGGGSSGGGSG 102
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 30.0 bits (66), Expect = 0.45
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 68 PGGGGSGADFSLLG--AFLGLVALLGGLGSCGRRSHSSP-GPAGSGGEKVSSSGSG 120
PG G L G GL GG G G S P GPAGS GE+ ++GSG
Sbjct: 886 PGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGER-GAAGSG 940
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 30.0 bits (66), Expect = 0.45
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 68 PGGGGSGADFSLLG--AFLGLVALLGGLGSCGRRSHSSP-GPAGSGGEKVSSSGSG 120
PG G L G GL GG G G S P GPAGS GE+ ++GSG
Sbjct: 865 PGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGER-GAAGSG 919
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 30.0 bits (66), Expect = 0.45
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 68 PGGGGSGADFSLLG--AFLGLVALLGGLGSCGRRSHSSP-GPAGSGGEKVSSSGSG 120
PG G L G GL GG G G S P GPAGS GE+ ++GSG
Sbjct: 972 PGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGER-GAAGSG 1026
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 29.6 bits (65), Expect = 0.58
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGS 119
GGGGS + +L A G GG+ + G + S+P A +G SSS S
Sbjct: 98 GGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSS 148
Score = 27.3 bits (59), Expect = 2.9
Identities = 17/58 (29%), Positives = 21/58 (36%)
Query: 63 VAVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
+A + G GG G S G + GS S SS + S SSS G
Sbjct: 108 LAAASNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCG 165
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 29.6 bits (65), Expect = 0.58
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGS 119
GGGGS + +L A G GG+ + G + S+P A +G SSS S
Sbjct: 98 GGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSS 148
Score = 27.3 bits (59), Expect = 2.9
Identities = 17/58 (29%), Positives = 21/58 (36%)
Query: 63 VAVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
+A + G GG G S G + GS S SS + S SSS G
Sbjct: 108 LAAASNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCG 165
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 29.6 bits (65), Expect = 0.58
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 69 GGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGS 119
GGGGS + +L A G GG+ + G + S+P A +G SSS S
Sbjct: 98 GGGGSNCNPNLAAASNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSS 148
Score = 27.3 bits (59), Expect = 2.9
Identities = 17/58 (29%), Positives = 21/58 (36%)
Query: 63 VAVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
+A + G GG G S G + GS S SS + S SSS G
Sbjct: 108 LAAASNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSSSCG 165
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 29.6 bits (65), Expect = 0.58
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 65 VSLPGGGGSG---ADFSLLGAFLGLVALLGGLGSCGRR-SHSSPGPAGSGGEKVSSSGSG 120
++LPGGGG G A+ LG LG ++ L GLG G +P P + + S G G
Sbjct: 148 LALPGGGGDGAAVAEIGALGRRLG-ISRLQGLGEGGDAWVPPTPAPMATSQPEEDSFGPG 206
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 29.6 bits (65), Expect = 0.58
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 65 VSLPGGGGSG---ADFSLLGAFLGLVALLGGLGSCGRR-SHSSPGPAGSGGEKVSSSGSG 120
++LPGGGG G A+ LG LG ++ L GLG G +P P + + S G G
Sbjct: 148 LALPGGGGDGAAVAEIGALGRRLG-ISRLQGLGEGGDAWVPPTPAPMATSQPEEDSFGPG 206
>gi|4505531 oxysterol binding protein [Homo sapiens]
Length = 807
Score = 29.6 bits (65), Expect = 0.58
Identities = 25/60 (41%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 69 GGGGSGADFSLLGAFLGLV--ALLGGLG-SCGRRSHSSPGPA----GSGGEKVSSSGSGR 121
GGGG G GA G V A GG G G + + P PA GSGG SGS R
Sbjct: 32 GGGGRGDAGPGSGAASGTVVAAAAGGPGPGAGGVAAAGPAPAPPTGGSGGSGAGGSGSAR 91
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 29.3 bits (64), Expect = 0.76
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 68 PGGGGSGADFSLLGAFLGLVALLGG--LGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
PGGGG+GA GL A + G L ++ +S GP E S G G
Sbjct: 216 PGGGGAGAP--------GLAAAIAGAKLRKVSKQEEASGGPTAPKAESGRSGGGG 262
>gi|28373194 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 29.3 bits (64), Expect = 0.76
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 66 SLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSS----PGPAGSGG 111
+L G SG + S LG GL +LLG + SHS GPAG GG
Sbjct: 136 ALGASGSSGHELSALGGEGGLQSLLGNM------SHSQLMQLIGPAGLGG 179
>gi|28373192 adhesion regulating molecule 1 precursor [Homo sapiens]
Length = 407
Score = 29.3 bits (64), Expect = 0.76
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
Query: 66 SLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSS----PGPAGSGG 111
+L G SG + S LG GL +LLG + SHS GPAG GG
Sbjct: 136 ALGASGSSGHELSALGGEGGLQSLLGNM------SHSQLMQLIGPAGLGG 179
>gi|167466169 growth arrest-specific 1 [Homo sapiens]
Length = 345
Score = 29.3 bits (64), Expect = 0.76
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 63 VAVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPG 105
+ +L GGGG ++ GA+L L+ALL LGS R S + G
Sbjct: 1 MVAALLGGGGEARGGTVPGAWLCLMALLQLLGSAPRGSGLAHG 43
>gi|47132620 keratin 2 [Homo sapiens]
Length = 639
Score = 29.3 bits (64), Expect = 0.76
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 63 VAVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGG 111
+++S+ GGGG F G F G GG S G S S G G GG
Sbjct: 72 ISISVAGGGGG---FGAAGGFGGRGGGFGGGSSFGGGSGFSGGGFGGGG 117
Score = 29.3 bits (64), Expect = 0.76
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 70 GGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSG 120
GGGSG + G G GG GS G + HSS G + G GSG
Sbjct: 566 GGGSGGRYGSGGGSKGGSISGGGYGSGGGK-HSSGGGSRGGSSSGGGYGSG 615
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 28.9 bits (63), Expect = 1.00
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 64 AVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSHSSPGPAGSGGEKVSSSGSGRA 122
A +PGG G + L G +G G G+ G + +PGPAG+ G++ + +G A
Sbjct: 647 AAGIPGGKGEKGEPGLRGE-IGNPGRDGARGAPG--AVGAPGPAGATGDRGEAGAAGPA 702
Score = 28.1 bits (61), Expect = 1.7
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 64 AVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCGRRSH-SSPGPAGSGGEKVSSSGSGRA 122
A LPG G+ L G+ +G G+ G R PGPAGS GE + G A
Sbjct: 311 AAGLPGVAGAPG----LPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSA 366
>gi|169211258 PREDICTED: similar to hCG2036610 [Homo sapiens]
Length = 387
Score = 28.9 bits (63), Expect = 1.00
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 38 IFTGHTDTVIIVGSLLRALGSHNFFVAVSLPGGGGSGADFSLLGAFLGLVALLGGLGSCG 97
+F G V GS+ + GS + + G G S LG GG G
Sbjct: 44 LFHGSGPHVHSGGSVTHSTGSSCPSGGIVVLGSGPSQHPREAANHSLGSGRNPGGFNIPG 103
Query: 98 RRSH----SSPGPAGSGGEKVSSSG 118
R+ SSPGP G G++V+S G
Sbjct: 104 PRTSVSRASSPGPGGPAGQEVNSPG 128
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,800,249
Number of Sequences: 37866
Number of extensions: 284156
Number of successful extensions: 1289
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 243
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.