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Search of human proteins with 239749701
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749701 PREDICTED: hypothetical protein XP_002347123 [Homo
sapiens]
(275 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749701 PREDICTED: hypothetical protein XP_002347123 [Homo ... 567 e-162
gi|239743967 PREDICTED: hypothetical protein XP_002344251 [Homo ... 567 e-162
gi|239753887 PREDICTED: hypothetical protein [Homo sapiens] 35 0.054
gi|15029506 homeobox D8 [Homo sapiens] 33 0.35
gi|239755402 PREDICTED: hypothetical protein [Homo sapiens] 32 0.46
gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo ... 32 0.46
gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo ... 32 0.46
gi|14916433 naked cuticle homolog 1 [Homo sapiens] 32 0.79
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 31 1.3
gi|14916427 naked cuticle homolog 2 [Homo sapiens] 31 1.3
gi|110681708 zinc finger protein 579 [Homo sapiens] 31 1.3
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 30 1.8
gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens] 30 2.3
gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens] 30 2.3
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 30 3.0
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 29 3.9
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 29 3.9
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 29 3.9
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] 29 3.9
gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo ... 29 5.1
gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo ... 29 5.1
gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo ... 29 5.1
gi|189217895 KH domain-containing, RNA-binding, signal transduct... 29 5.1
gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens] 29 5.1
gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens] 29 5.1
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 28 6.7
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 28 6.7
gi|157739942 gemin 5 [Homo sapiens] 28 6.7
gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo sa... 28 6.7
gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens] 28 8.7
>gi|239749701 PREDICTED: hypothetical protein XP_002347123 [Homo
sapiens]
Length = 275
Score = 567 bits (1462), Expect = e-162
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG 60
MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG
Sbjct: 1 MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG 60
Query: 61 VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL 120
VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL
Sbjct: 61 VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL 120
Query: 121 RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP 180
RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP
Sbjct: 121 RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP 180
Query: 181 SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC 240
SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC
Sbjct: 181 SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC 240
Query: 241 RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL 275
RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL
Sbjct: 241 RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL 275
>gi|239743967 PREDICTED: hypothetical protein XP_002344251 [Homo
sapiens]
Length = 275
Score = 567 bits (1462), Expect = e-162
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG 60
MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG
Sbjct: 1 MAPAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQG 60
Query: 61 VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL 120
VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL
Sbjct: 61 VRCGPALGGTLDGVLAQLLLAAVVGEDHLLAVCVTLEDHVGVQHAAELPQEVEGAVAQLL 120
Query: 121 RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP 180
RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP
Sbjct: 121 RRHQHHHHQRAGRQPLGYMLRTVQPVPLALRAVAALVAVPVAEVVLAVLVVQGAPYLHWP 180
Query: 181 SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC 240
SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC
Sbjct: 181 SARWQSKPSKRQPAELHWLSQWPSLKYFQHCRDCVQFFQGSLKLREQSPPSQPHAWLLHC 240
Query: 241 RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL 275
RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL
Sbjct: 241 RLQTLLPASSWHSGSSHASSISGGGMSRPAPPPKL 275
>gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 35.4 bits (80), Expect = 0.054
Identities = 28/80 (35%), Positives = 33/80 (41%), Gaps = 16/80 (20%)
Query: 1 MAPAVRGREAVGEGPGELRGLTVGA------------GSHSPADVHGVQLPPPP---PTL 45
M A RGR G GPGE T+ A G+H P V G+Q+P P
Sbjct: 1 MTWACRGRREAGAGPGEADFRTIWACRGRQEAQAGPRGAHQPEAVWGLQMPSEGRSWPGE 60
Query: 46 AATREQRGLHLAQQGVRCGP 65
A R + GL G CGP
Sbjct: 61 ATVRPELGLGSLASG-SCGP 79
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 32.7 bits (73), Expect = 0.35
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 2 APAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPP--TLAATREQRG 53
AP V GR A +L G + H+P H P PPP T RE RG
Sbjct: 37 APEVGGRHAAAAAALQLYGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRG 90
>gi|239755402 PREDICTED: hypothetical protein [Homo sapiens]
Length = 321
Score = 32.3 bits (72), Expect = 0.46
Identities = 30/86 (34%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 64 GPALGGTLDGVLAQLLLAAVV----------GEDHLLAVCVTLEDHVGVQH---AAELPQ 110
G L G D AQLL AVV G H V L GV+ E+PQ
Sbjct: 2 GGYLAGPSDQQFAQLLAEAVVQPGVDEGVVAGRTHGEPVAEQLHQPKGVRVDGVGVEVPQ 61
Query: 111 EVEGAVAQLL-RRHQHHHHQRAGRQP 135
+VE Q H H HHQ+A P
Sbjct: 62 QVEDVQRQPADGEHHHDHHQQAEGAP 87
>gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo
sapiens]
Length = 321
Score = 32.3 bits (72), Expect = 0.46
Identities = 30/86 (34%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 64 GPALGGTLDGVLAQLLLAAVV----------GEDHLLAVCVTLEDHVGVQH---AAELPQ 110
G L G D AQLL AVV G H V L GV+ E+PQ
Sbjct: 2 GGYLAGPSDQQFAQLLAEAVVQPGVDEGVVAGRTHGEPVAEQLHQPKGVRVDGVGVEVPQ 61
Query: 111 EVEGAVAQLL-RRHQHHHHQRAGRQP 135
+VE Q H H HHQ+A P
Sbjct: 62 QVEDVQRQPADGEHHHDHHQQAEGAP 87
>gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo
sapiens]
Length = 321
Score = 32.3 bits (72), Expect = 0.46
Identities = 30/86 (34%), Positives = 34/86 (39%), Gaps = 14/86 (16%)
Query: 64 GPALGGTLDGVLAQLLLAAVV----------GEDHLLAVCVTLEDHVGVQH---AAELPQ 110
G L G D AQLL AVV G H V L GV+ E+PQ
Sbjct: 2 GGYLAGPSDQQFAQLLAEAVVQPGVDEGVVAGRTHGEPVAEQLHQPKGVRVDGVGVEVPQ 61
Query: 111 EVEGAVAQLL-RRHQHHHHQRAGRQP 135
+VE Q H H HHQ+A P
Sbjct: 62 QVEDVQRQPADGEHHHDHHQQAEGAP 87
>gi|14916433 naked cuticle homolog 1 [Homo sapiens]
Length = 470
Score = 31.6 bits (70), Expect = 0.79
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 100 VGVQHAAELPQEV--EGAVAQLLRRHQHHHH 128
+G +H ELP V E Q ++RH+HHHH
Sbjct: 427 LGREHLRELPALVVYESQAGQPVQRHEHHHH 457
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 30.8 bits (68), Expect = 1.3
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 2 APAVRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGL 54
AP RG + PG LRG GAG P G PP PP A T +G+
Sbjct: 679 APGERGPPGLAGAPG-LRG---GAGPPGPEGGKGAAGPPGPPGAAGTPGLQGM 727
>gi|14916427 naked cuticle homolog 2 [Homo sapiens]
Length = 451
Score = 30.8 bits (68), Expect = 1.3
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 17/100 (17%)
Query: 29 SPADVHGVQLPPPPPTLAATREQRGLHLAQQGVRCGPALGGTLDGVLAQLLLAAVVGEDH 88
+P D H + PPPPP Q+G ++ A T++ + + L GE +
Sbjct: 365 APQDGHHLPQPPPPPYGHKRYRQKGRE-GHSPLKAPHAQPATVEHEVVRDLPPTPAGEGY 423
Query: 89 LLAVCVTLEDHVGVQHAAELPQEVEGAVAQLLRRHQHHHH 128
+ V E H +H H HHHH
Sbjct: 424 AVPVIQRHEHHHHHEH----------------HHHHHHHH 447
>gi|110681708 zinc finger protein 579 [Homo sapiens]
Length = 562
Score = 30.8 bits (68), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 39 PPPPPTLAATREQRGLHLAQQGVRCGPALGGT 70
PPPPP L A +E+ GL L ++ P GT
Sbjct: 485 PPPPPPLKAEQEEEGLPLPLANIKEEPPSPGT 516
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 14 GPGELRGLTVGAGSHSPA--DVHGV--QLPPPPPTLAATREQRGLHL 56
G E RG + GAG H A D H +LP PP +A R G HL
Sbjct: 545 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALVAGHRTVLGKHL 591
>gi|42476101 TFIIA alpha, p55 isoform 2 [Homo sapiens]
Length = 337
Score = 30.0 bits (66), Expect = 2.3
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 118 QLLRRHQHHHHQRA-GRQPLGYMLRTVQP-VPLALRAVAALVAVPVAEVV 165
Q + H HHHHQ+A +Q + +T Q +P + +A A V VP ++++
Sbjct: 38 QQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLI 87
>gi|7706735 TFIIA alpha, p55 isoform 1 [Homo sapiens]
Length = 376
Score = 30.0 bits (66), Expect = 2.3
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 118 QLLRRHQHHHHQRA-GRQPLGYMLRTVQP-VPLALRAVAALVAVPVAEVV 165
Q + H HHHHQ+A +Q + +T Q +P + +A A V VP ++++
Sbjct: 77 QQQQHHHHHHHQQAQPQQTVPQQAQTQQVLIPASQQATAPQVIVPDSKLI 126
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform
3 [Homo sapiens]
Length = 2059
Score = 29.6 bits (65), Expect = 3.0
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 11 VGEGPGELRGLTVGAGSHSPADVHGVQLPPPPP 43
+G GPG RG HSP H PPPPP
Sbjct: 52 LGRGPGHDRG----RDRHSPPGCHLFPPPPPPP 80
>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
Length = 844
Score = 29.3 bits (64), Expect = 3.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 248 ASSWHSGSSHASSISGGGMSRPAPPPK 274
+SS SGSS SS + +SRPA PP+
Sbjct: 38 SSSSESGSSSRSSSNNSSISRPAAPPE 64
>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
Length = 852
Score = 29.3 bits (64), Expect = 3.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 248 ASSWHSGSSHASSISGGGMSRPAPPPK 274
+SS SGSS SS + +SRPA PP+
Sbjct: 38 SSSSESGSSSRSSSNNSSISRPAAPPE 64
>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
Length = 858
Score = 29.3 bits (64), Expect = 3.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 248 ASSWHSGSSHASSISGGGMSRPAPPPK 274
+SS SGSS SS + +SRPA PP+
Sbjct: 38 SSSSESGSSSRSSSNNSSISRPAAPPE 64
>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
Length = 850
Score = 29.3 bits (64), Expect = 3.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 248 ASSWHSGSSHASSISGGGMSRPAPPPK 274
+SS SGSS SS + +SRPA PP+
Sbjct: 38 SSSSESGSSSRSSSNNSSISRPAAPPE 64
>gi|239754301 PREDICTED: hypothetical protein XP_002345934 [Homo
sapiens]
Length = 221
Score = 28.9 bits (63), Expect = 5.1
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 19 RGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQGVRCGPALGGTLDGVLAQL 78
R L G G PA G + P P P +A G HL A GG + V+ L
Sbjct: 98 RTLRRGEGRGGPAQ--GARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTL 155
Query: 79 LLAAVVGEDHLLAV 92
++ + G+ H+ A+
Sbjct: 156 VVPLLHGQRHVHAL 169
>gi|239748840 PREDICTED: hypothetical protein XP_002346835 [Homo
sapiens]
Length = 221
Score = 28.9 bits (63), Expect = 5.1
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 19 RGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQGVRCGPALGGTLDGVLAQL 78
R L G G PA G + P P P +A G HL A GG + V+ L
Sbjct: 98 RTLRRGEGRGGPAQ--GARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTL 155
Query: 79 LLAAVVGEDHLLAV 92
++ + G+ H+ A+
Sbjct: 156 VVPLLHGQRHVHAL 169
>gi|239742867 PREDICTED: hypothetical protein XP_002342667 [Homo
sapiens]
Length = 221
Score = 28.9 bits (63), Expect = 5.1
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 19 RGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQGVRCGPALGGTLDGVLAQL 78
R L G G PA G + P P P +A G HL A GG + V+ L
Sbjct: 98 RTLRRGEGRGGPAQ--GARGPTPTPRGSAPPRPPGPHLRVVAAHLAWAAGGGAEVVVLTL 155
Query: 79 LLAAVVGEDHLLAV 92
++ + G+ H+ A+
Sbjct: 156 VVPLLHGQRHVHAL 169
>gi|189217895 KH domain-containing, RNA-binding, signal
transduction-associated protein 2 [Homo sapiens]
Length = 349
Score = 28.9 bits (63), Expect = 5.1
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 5 VRGREAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAATREQRGLHLAQQGVRCG 64
+ G E G G G +RG + +P+ G +PPPPP RG + + +
Sbjct: 178 LNGSEDSGRGRG-IRGRGIRIAPTAPSRGRGGAIPPPPPPGRGVLTPRGSTVTRGALPVP 236
Query: 65 PALGG 69
P G
Sbjct: 237 PVARG 241
>gi|156142182 CXXC finger 1 (PHD domain) isoform 1 [Homo sapiens]
Length = 660
Score = 28.9 bits (63), Expect = 5.1
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 180 PSARWQSKPSKRQPAELHWLSQWPSLKYFQ-HCRDCVQFFQGS-LKLREQSPPSQPHAWL 237
P A SK + A ++ + + P + F C +C ++F G +++ E+ + +
Sbjct: 11 PDAGEDSKSENGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYC 70
Query: 238 LHCR-------LQTLLPASSWHSGSSHASSI---SGGGMSRPAPPPKL 275
CR ++ S G+ SS GGG RP P P L
Sbjct: 71 RECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDL 118
>gi|156142180 CXXC finger 1 (PHD domain) isoform 2 [Homo sapiens]
Length = 656
Score = 28.9 bits (63), Expect = 5.1
Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 180 PSARWQSKPSKRQPAELHWLSQWPSLKYFQ-HCRDCVQFFQGS-LKLREQSPPSQPHAWL 237
P A SK + A ++ + + P + F C +C ++F G +++ E+ + +
Sbjct: 11 PDAGEDSKSENGENAPIYCICRKPDINCFMIGCDNCNEWFHGDCIRITEKMAKAIREWYC 70
Query: 238 LHCR-------LQTLLPASSWHSGSSHASSI---SGGGMSRPAPPPKL 275
CR ++ S G+ SS GGG RP P P L
Sbjct: 71 RECREKDPKLEIRYRHKKSRERDGNERDSSEPRDEGGGRKRPVPDPDL 118
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 28.5 bits (62), Expect = 6.7
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 8 REAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAA---TREQRGL-----HLAQQ 59
R GPG GL AG+ P Q PP PP AA T++ +G +L ++
Sbjct: 164 RGGPASGPGVTPGLGAPAGAPGPLPAPS-QTPPGPPAAAACDPTKDDKGYFRRLKYLMER 222
Query: 60 GVRCG 64
CG
Sbjct: 223 RFPCG 227
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 28.5 bits (62), Expect = 6.7
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 8 REAVGEGPGELRGLTVGAGSHSPADVHGVQLPPPPPTLAA---TREQRGL-----HLAQQ 59
R GPG GL AG+ P Q PP PP AA T++ +G +L ++
Sbjct: 164 RGGPASGPGVTPGLGAPAGAPGPLPAPS-QTPPGPPAAAACDPTKDDKGYFRRLKYLMER 222
Query: 60 GVRCG 64
CG
Sbjct: 223 RFPCG 227
>gi|157739942 gemin 5 [Homo sapiens]
Length = 1508
Score = 28.5 bits (62), Expect = 6.7
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 13/72 (18%)
Query: 80 LAAVVGEDHLLA--------VCVTLEDHVGVQHAAELPQEVEG-----AVAQLLRRHQHH 126
LAA+VGED L A + + VG Q A +L + ++G + +LL RH
Sbjct: 1074 LAAIVGEDELSASLALRCAQELLLANNWVGAQEALQLHESLQGQRLVFCLLELLSRHLEE 1133
Query: 127 HHQRAGRQPLGY 138
G+ Y
Sbjct: 1134 KQLSEGKSSSSY 1145
>gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo
sapiens]
Length = 554
Score = 28.5 bits (62), Expect = 6.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 229 PPSQPHAWLLHCRLQTLLPASSWHSG 254
PP P WLL L + PA W SG
Sbjct: 26 PPRTPLLWLLLLLLAAVAPARGWESG 51
>gi|10835246 Kruppel-like factor 1 (erythroid) [Homo sapiens]
Length = 362
Score = 28.1 bits (61), Expect = 8.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 29 SPADVHGVQLPPPPPTLAATREQRGL 54
+P++ G Q PPPP TL A GL
Sbjct: 97 APSEASGAQYPPPPETLGAYAGGPGL 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,479,033
Number of Sequences: 37866
Number of extensions: 718675
Number of successful extensions: 3681
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3641
Number of HSP's gapped (non-prelim): 50
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.