Guide to the Human Genome
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Name: NKD1 Sequence: fasta or formatted (470aa) NCBI GI: 14916433
Description:

naked cuticle homolog 1

Referenced in:

Wnt Signals

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         33           2
 C cysteine            1.5          7           1
 D aspartate           4.7         22           2
 E glutamate           8.1         38           4
 F phenylalanine       2.3         11           1
 G glycine             7.7         36           2
 H histidine           6.2         29           5
 I isoleucine          2.3         11           1
 K lysine              6.0         28           2
 L leucine             8.3         39           2
 M methionine          0.9          4           1
 N asparagine          1.9          9           2
 P proline             7.7         36           2
 Q glutamine           5.3         25           2
 R arginine            8.1         38           2
 S serine              9.4         44           2
 T threonine           4.0         19           1
 V valine              6.2         29           2
 W tryptophan          0.9          4           1
 Y tyrosine            1.7          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   naked cuticle homolog 1 
NKD2                  0.304   naked cuticle homolog 2 
FUSSEL18              0.029   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.029   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.029   PREDICTED: functional smad suppressing element 18 [...
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.020   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
PRDM13                0.020   PR domain containing 13 
NUFIP2                0.019   nuclear fragile X mental retardation protein interac...
TTBK1                 0.018   tau tubulin kinase 1 
IQSEC1                0.018   IQ motif and Sec7 domain 1 isoform a 
C10orf140             0.018   hypothetical protein LOC387640 
FOXB2                 0.018   forkhead box B2 
MEOX2                 0.018   mesenchyme homeobox 2 
FREQ                  0.018   frequenin homolog isoform 2 
FREQ                  0.018   frequenin homolog isoform 1 
NR4A3                 0.017   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.017   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.017   nuclear receptor subfamily 4, group A, member 3 isof...
NR4A3                 0.017   nuclear receptor subfamily 4, group A, member 3 isof...
VSNL1                 0.016   visinin-like 1 
CACNA1A               0.016   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.016   calcium channel, alpha 1A subunit isoform 3 
DYRK1A                0.016   dual-specificity tyrosine-(Y)-phosphorylation regula...
DYRK1A                0.016   dual-specificity tyrosine-(Y)-phosphorylation regula...
HPCA                  0.016   hippocalcin 
GATA6                 0.015   GATA binding protein 6 
CBX4                  0.015   chromobox homolog 4 
DLGAP3                0.015   discs, large (Drosophila) homolog-associated protei...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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