Search of human proteins with 239749681

Search of human proteins with 239749681

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239749681 PREDICTED: hypothetical protein XP_002347118 [Homo
sapiens]
         (125 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755184 PREDICTED: hypothetical protein [Homo sapiens]           249   5e-67
gi|239749681 PREDICTED: hypothetical protein XP_002347118 [Homo ...   249   5e-67
gi|239743948 PREDICTED: hypothetical protein XP_002342996 [Homo ...   249   5e-67
gi|119395764 NLR family, pyrin domain containing 3 isoform a [Ho...    32   0.12 
gi|188536116 NLR family, pyrin domain containing 3 isoform c [Ho...    32   0.12 
gi|188536002 NLR family, pyrin domain containing 3 isoform d [Ho...    32   0.12 
gi|34878693 NLR family, pyrin domain containing 3 isoform a [Hom...    32   0.12 
gi|34878690 NLR family, pyrin domain containing 3 isoform b [Hom...    32   0.12 
gi|14249174 pleckstrin homology domain containing, family A (pho...    30   0.62 
gi|7705684 pleckstrin homology domain containing, family A (phos...    30   0.62 
gi|238550107 SET domain containing 6 isoform a [Homo sapiens]          29   1.1  
gi|238550105 SET domain containing 6 isoform b [Homo sapiens]          29   1.1  
gi|27437019 calcium/calmodulin-dependent protein kinase kinase 2...    29   1.1  
gi|27437017 calcium/calmodulin-dependent protein kinase kinase 2...    29   1.1  
gi|27437015 calcium/calmodulin-dependent protein kinase kinase 2...    29   1.1  
gi|27437027 calcium/calmodulin-dependent protein kinase kinase 2...    29   1.1  
gi|27437025 calcium/calmodulin-dependent protein kinase kinase 2...    29   1.1  
gi|27437023 calcium/calmodulin-dependent protein kinase kinase 2...    29   1.1  
gi|27437021 calcium/calmodulin-dependent protein kinase kinase 2...    29   1.1  
gi|49087132 sal-like 2 [Homo sapiens]                                  28   1.8  
gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo ...    28   2.3  
gi|239749959 PREDICTED: hypothetical protein [Homo sapiens]            27   3.1  
gi|239740722 PREDICTED: hypothetical protein [Homo sapiens]            27   3.1  
gi|55770878 neuronal pentraxin I precursor [Homo sapiens]              27   4.0  
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]    27   4.0  
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]            27   4.0  
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]            27   4.0  
gi|41322923 plectin 1 isoform 11 [Homo sapiens]                        27   4.0  
gi|41322914 plectin 1 isoform 10 [Homo sapiens]                        27   4.0  
gi|41322919 plectin 1 isoform 8 [Homo sapiens]                         27   4.0  

>gi|239755184 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 125

 Score =  249 bits (635), Expect = 5e-67
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60
           MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP
Sbjct: 1   MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60

Query: 61  REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120
           REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF
Sbjct: 61  REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120

Query: 121 LDHPK 125
           LDHPK
Sbjct: 121 LDHPK 125


>gi|239749681 PREDICTED: hypothetical protein XP_002347118 [Homo
           sapiens]
          Length = 125

 Score =  249 bits (635), Expect = 5e-67
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60
           MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP
Sbjct: 1   MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60

Query: 61  REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120
           REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF
Sbjct: 61  REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120

Query: 121 LDHPK 125
           LDHPK
Sbjct: 121 LDHPK 125


>gi|239743948 PREDICTED: hypothetical protein XP_002342996 [Homo
           sapiens]
          Length = 125

 Score =  249 bits (635), Expect = 5e-67
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60
           MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP
Sbjct: 1   MFVQPKRLKDTRVWLKLLSVCRLLADSFSQLVRYSSTRSHLLADGLQVLVLHQVLTEVDP 60

Query: 61  REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120
           REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF
Sbjct: 61  REAGAAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAF 120

Query: 121 LDHPK 125
           LDHPK
Sbjct: 121 LDHPK 125


>gi|119395764 NLR family, pyrin domain containing 3 isoform a [Homo
           sapiens]
          Length = 1036

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 64  GAAGVRKEAEEALVWLE-VTGSVHQ------LHIPGREKSLAQERATGTLILASKPSPPP 116
           GAAG+ K      + L+  +G+++Q       +I  RE SL  +R+ G LI++  P P P
Sbjct: 226 GAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGDLIMSCCPDPNP 285

Query: 117 P 117
           P
Sbjct: 286 P 286


>gi|188536116 NLR family, pyrin domain containing 3 isoform c [Homo
           sapiens]
          Length = 979

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 64  GAAGVRKEAEEALVWLE-VTGSVHQ------LHIPGREKSLAQERATGTLILASKPSPPP 116
           GAAG+ K      + L+  +G+++Q       +I  RE SL  +R+ G LI++  P P P
Sbjct: 226 GAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGDLIMSCCPDPNP 285

Query: 117 P 117
           P
Sbjct: 286 P 286


>gi|188536002 NLR family, pyrin domain containing 3 isoform d [Homo
           sapiens]
          Length = 979

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 64  GAAGVRKEAEEALVWLE-VTGSVHQ------LHIPGREKSLAQERATGTLILASKPSPPP 116
           GAAG+ K      + L+  +G+++Q       +I  RE SL  +R+ G LI++  P P P
Sbjct: 226 GAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGDLIMSCCPDPNP 285

Query: 117 P 117
           P
Sbjct: 286 P 286


>gi|34878693 NLR family, pyrin domain containing 3 isoform a [Homo
           sapiens]
          Length = 1036

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 64  GAAGVRKEAEEALVWLE-VTGSVHQ------LHIPGREKSLAQERATGTLILASKPSPPP 116
           GAAG+ K      + L+  +G+++Q       +I  RE SL  +R+ G LI++  P P P
Sbjct: 226 GAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGDLIMSCCPDPNP 285

Query: 117 P 117
           P
Sbjct: 286 P 286


>gi|34878690 NLR family, pyrin domain containing 3 isoform b [Homo
           sapiens]
          Length = 922

 Score = 32.0 bits (71), Expect = 0.12
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)

Query: 64  GAAGVRKEAEEALVWLE-VTGSVHQ------LHIPGREKSLAQERATGTLILASKPSPPP 116
           GAAG+ K      + L+  +G+++Q       +I  RE SL  +R+ G LI++  P P P
Sbjct: 226 GAAGIGKTILARKMMLDWASGTLYQDRFDYLFYIHCREVSLVTQRSLGDLIMSCCPDPNP 285

Query: 117 P 117
           P
Sbjct: 286 P 286


>gi|14249174 pleckstrin homology domain containing, family A
           (phosphoinositide binding specific) member 8 [Homo
           sapiens]
          Length = 440

 Score = 29.6 bits (65), Expect = 0.62
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 7/35 (20%)

Query: 46  LQVLVLHQVLTEVDPREAGAAGVRKEAEEALVWLE 80
           LQ +VLH+V       EA  A VR  A EAL+WL+
Sbjct: 382 LQKIVLHEV-------EADVAQVRNSATEALLWLK 409


>gi|7705684 pleckstrin homology domain containing, family A
           (phosphoinositide binding specific) member 9 [Homo
           sapiens]
          Length = 391

 Score = 29.6 bits (65), Expect = 0.62
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 7/35 (20%)

Query: 46  LQVLVLHQVLTEVDPREAGAAGVRKEAEEALVWLE 80
           LQ +VLH+V       EA  A VR  A EAL+WL+
Sbjct: 266 LQKIVLHEV-------EADVAQVRNSATEALLWLK 293


>gi|238550107 SET domain containing 6 isoform a [Homo sapiens]
          Length = 473

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 58  VDPREAGAAGVRKEAEEALVW--------LEVTGSVHQLHIPGREKSLAQERATGTLILA 109
           V  REA   G + EAE  LV+        LE+ G      + GRE+ L +E  T TL + 
Sbjct: 316 VTVREAALQGTKTEAERHLVYERWDFLCKLEMVGE-EGAFVIGREEVLTEEELTTTLKVL 374

Query: 110 SKPS 113
             P+
Sbjct: 375 CMPA 378


>gi|238550105 SET domain containing 6 isoform b [Homo sapiens]
          Length = 449

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 58  VDPREAGAAGVRKEAEEALVW--------LEVTGSVHQLHIPGREKSLAQERATGTLILA 109
           V  REA   G + EAE  LV+        LE+ G      + GRE+ L +E  T TL + 
Sbjct: 292 VTVREAALQGTKTEAERHLVYERWDFLCKLEMVGE-EGAFVIGREEVLTEEELTTTLKVL 350

Query: 110 SKPS 113
             P+
Sbjct: 351 CMPA 354


>gi|27437019 calcium/calmodulin-dependent protein kinase kinase 2
           beta isoform 4 [Homo sapiens]
          Length = 498

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 45  GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
           GL  L +H       V+TE +P  A   G+ +    EA+   V L+ +GS  + H+ GR+
Sbjct: 39  GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98

Query: 95  KSLAQERATGTL 106
            SL QER+ G L
Sbjct: 99  LSL-QERSQGGL 109


>gi|27437017 calcium/calmodulin-dependent protein kinase kinase 2
           beta isoform 2 [Homo sapiens]
          Length = 541

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 45  GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
           GL  L +H       V+TE +P  A   G+ +    EA+   V L+ +GS  + H+ GR+
Sbjct: 39  GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98

Query: 95  KSLAQERATGTL 106
            SL QER+ G L
Sbjct: 99  LSL-QERSQGGL 109


>gi|27437015 calcium/calmodulin-dependent protein kinase kinase 2
           beta isoform 1 [Homo sapiens]
          Length = 588

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 45  GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
           GL  L +H       V+TE +P  A   G+ +    EA+   V L+ +GS  + H+ GR+
Sbjct: 39  GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98

Query: 95  KSLAQERATGTL 106
            SL QER+ G L
Sbjct: 99  LSL-QERSQGGL 109


>gi|27437027 calcium/calmodulin-dependent protein kinase kinase 2
           beta isoform 2 [Homo sapiens]
          Length = 541

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 45  GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
           GL  L +H       V+TE +P  A   G+ +    EA+   V L+ +GS  + H+ GR+
Sbjct: 39  GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98

Query: 95  KSLAQERATGTL 106
            SL QER+ G L
Sbjct: 99  LSL-QERSQGGL 109


>gi|27437025 calcium/calmodulin-dependent protein kinase kinase 2
           beta isoform 3 [Homo sapiens]
          Length = 545

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 45  GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
           GL  L +H       V+TE +P  A   G+ +    EA+   V L+ +GS  + H+ GR+
Sbjct: 39  GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98

Query: 95  KSLAQERATGTL 106
            SL QER+ G L
Sbjct: 99  LSL-QERSQGGL 109


>gi|27437023 calcium/calmodulin-dependent protein kinase kinase 2
           beta isoform 6 [Homo sapiens]
          Length = 490

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 45  GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
           GL  L +H       V+TE +P  A   G+ +    EA+   V L+ +GS  + H+ GR+
Sbjct: 39  GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98

Query: 95  KSLAQERATGTL 106
            SL QER+ G L
Sbjct: 99  LSL-QERSQGGL 109


>gi|27437021 calcium/calmodulin-dependent protein kinase kinase 2
           beta isoform 5 [Homo sapiens]
          Length = 533

 Score = 28.9 bits (63), Expect = 1.1
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 11/72 (15%)

Query: 45  GLQVLVLHQ------VLTEVDPREAGAAGVRK----EAEEALVWLEVTGSVHQLHIPGRE 94
           GL  L +H       V+TE +P  A   G+ +    EA+   V L+ +GS  + H+ GR+
Sbjct: 39  GLSSLSIHLGMESFIVVTECEPGCAVDLGLARDRPLEADGQEVPLDTSGSQARPHLSGRK 98

Query: 95  KSLAQERATGTL 106
            SL QER+ G L
Sbjct: 99  LSL-QERSQGGL 109


>gi|49087132 sal-like 2 [Homo sapiens]
          Length = 1007

 Score = 28.1 bits (61), Expect = 1.8
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 65  AAGVRKEAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEAFLDHP 124
           A  VR ++EEA    E  G+V      G+E   + E+ T     +S P PPPP+  LD P
Sbjct: 795 AISVRGDSEEASGAEEEVGTVAAAATAGKEMD-SNEKTTQQ---SSLPPPPPPD-SLDQP 849

Query: 125 K 125
           +
Sbjct: 850 Q 850


>gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo
           sapiens]
          Length = 1048

 Score = 27.7 bits (60), Expect = 2.3
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 12/76 (15%)

Query: 62  EAGAAGVR------KEAEEALVWLEVTGSVHQLHIPGREKSLAQ------ERATGTLILA 109
           +A  AGVR      +  EE   W++  G   ++ IP  +KS+ Q      E+     +  
Sbjct: 127 KAEHAGVRTYFFSAESPEEQEAWIQAMGEAARVQIPPAQKSVPQAVRHSHEKPDSENVPP 186

Query: 110 SKPSPPPPEAFLDHPK 125
           SK    PP   L  P+
Sbjct: 187 SKHHQQPPHNSLPKPE 202


>gi|239749959 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 959

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 41  LLADGLQVLVLHQVLTEVDPREAGA-AGVRKE 71
           LL DGL +LVLH  L+ V P  AGA AG ++E
Sbjct: 198 LLVDGL-LLVLHAPLSNVVPTWAGATAGTQRE 228


>gi|239740722 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 138

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 6/40 (15%)

Query: 86  HQLH-----IPGREKSLAQERATGTLILASKPSPP-PPEA 119
           H LH     IPG +    +E   G L L  +P PP PP+A
Sbjct: 89  HDLHLFQEIIPGEQGEAEEECRVGGLHLPPRPHPPAPPQA 128


>gi|55770878 neuronal pentraxin I precursor [Homo sapiens]
          Length = 432

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 35  SSTRSHLLADGLQVLV---LHQVLTEVDPREAGAAGVRKEAEEALVWLEVTGSVHQ 87
           SS++++ L D LQ  +     QVL+ V+  E G  G R + EE +       S+HQ
Sbjct: 155 SSSQTNSLKDLLQSKIDELERQVLSRVNTLEEGKGGPRNDTEERVKIETALTSLHQ 210


>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
          Length = 324

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query: 71  EAEEALVWLEVTGSVHQLHIPGREKSLAQERATGTLILASKPSPPPPEA 119
           E ++    L++T +  ++    R     ++R   TL L   P PPPP A
Sbjct: 167 ERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPA 215


>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 38   RSHLLADGLQVLVLHQVLTEVDPREAGAAGVRKE--AEEALVWLEVTGSVHQLHIPGREK 95
            R H L DGL  ++ H  +  + P+ AGA   R     EE  V +     VH+L    R  
Sbjct: 1025 RLHGLQDGLVDVLRHHRVVRLHPQLAGACDGRAAHLDEEEAVRVAAAADVHELQRHRRLL 1084

Query: 96   SLAQERATG 104
            ++    A G
Sbjct: 1085 AVELHEADG 1093


>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1297

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 38   RSHLLADGLQVLVLHQVLTEVDPREAGAAGVRKE--AEEALVWLEVTGSVHQLHIPGREK 95
            R H L DGL  ++ H  +  + P+ AGA   R     EE  V +     VH+L    R  
Sbjct: 1025 RLHGLQDGLVDVLRHHRVVRLHPQLAGACDGRAAHLDEEEAVRVAAAADVHELQRHRRLL 1084

Query: 96   SLAQERATG 104
            ++    A G
Sbjct: 1085 AVELHEADG 1093


>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
          Length = 4547

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 31   LVRYSSTRSHLLADGLQVLVLHQVLTEVDPREAGAAGVRK--EAEEALVWLEVTGSVHQL 88
            L  Y   R  L A+ L    +  + T    RE G   +R+  EAE A  +L  TGSV  +
Sbjct: 3637 LASYDYVRRRLTAEDLFEARIISLETYNLLRE-GTRSLREALEAESAWCYLYGTGSVAGV 3695

Query: 89   HIPGREKSLAQERATGTLILASK 111
            ++PG  ++L+  +A    +L+++
Sbjct: 3696 YLPGSRQTLSIYQALKKGLLSAE 3718


>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
          Length = 4551

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 31   LVRYSSTRSHLLADGLQVLVLHQVLTEVDPREAGAAGVRK--EAEEALVWLEVTGSVHQL 88
            L  Y   R  L A+ L    +  + T    RE G   +R+  EAE A  +L  TGSV  +
Sbjct: 3641 LASYDYVRRRLTAEDLFEARIISLETYNLLRE-GTRSLREALEAESAWCYLYGTGSVAGV 3699

Query: 89   HIPGREKSLAQERATGTLILASK 111
            ++PG  ++L+  +A    +L+++
Sbjct: 3700 YLPGSRQTLSIYQALKKGLLSAE 3722


>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
          Length = 4547

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 31   LVRYSSTRSHLLADGLQVLVLHQVLTEVDPREAGAAGVRK--EAEEALVWLEVTGSVHQL 88
            L  Y   R  L A+ L    +  + T    RE G   +R+  EAE A  +L  TGSV  +
Sbjct: 3637 LASYDYVRRRLTAEDLFEARIISLETYNLLRE-GTRSLREALEAESAWCYLYGTGSVAGV 3695

Query: 89   HIPGREKSLAQERATGTLILASK 111
            ++PG  ++L+  +A    +L+++
Sbjct: 3696 YLPGSRQTLSIYQALKKGLLSAE 3718


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,335,195
Number of Sequences: 37866
Number of extensions: 210968
Number of successful extensions: 1027
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 58
length of query: 125
length of database: 18,247,518
effective HSP length: 90
effective length of query: 35
effective length of database: 14,839,578
effective search space: 519385230
effective search space used: 519385230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.