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Search of human proteins with 117553627
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|117553627 acetylserotonin O-methyltransferase-like [Homo
sapiens]
(621 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|117553627 acetylserotonin O-methyltransferase-like [Homo sapi... 1243 0.0
gi|239752250 PREDICTED: similar to acetylserotonin O-methyltrans... 598 e-171
gi|157168360 acetylserotonin O-methyltransferase [Homo sapiens] 236 4e-62
gi|7706501 WW domain binding protein 11 [Homo sapiens] 32 1.3
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 31 3.9
gi|19923050 death effector domain-containing DNA binding protei... 30 5.1
gi|41406057 amyloid beta A4 protein isoform c precursor [Homo sa... 30 8.6
gi|41406055 amyloid beta A4 protein isoform b precursor [Homo sa... 30 8.6
gi|4502167 amyloid beta A4 protein isoform a precursor [Homo sap... 30 8.6
gi|209915570 amyloid beta A4 protein isoform e precursor [Homo s... 30 8.6
gi|209915573 amyloid beta A4 protein isoform f precursor [Homo s... 30 8.6
gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo ... 30 8.6
gi|239508698 PREDICTED: similar to mucin [Homo sapiens] 30 8.6
gi|22749353 phospholipase D5 [Homo sapiens] 30 8.6
gi|33469141 COBW domain-containing protein 2 [Homo sapiens] 30 8.6
gi|38201621 eukaryotic translation initiation factor 4 gamma, 1 ... 30 8.6
gi|38201627 eukaryotic translation initiation factor 4 gamma, 1 ... 30 8.6
gi|38201625 eukaryotic translation initiation factor 4 gamma, 1 ... 30 8.6
gi|38201623 eukaryotic translation initiation factor 4 gamma, 1 ... 30 8.6
gi|38201619 eukaryotic translation initiation factor 4 gamma, 1 ... 30 8.6
gi|148612857 sickle tail isoform 3 [Homo sapiens] 30 8.6
gi|148612813 sickle tail isoform 2 [Homo sapiens] 30 8.6
gi|50843820 sickle tail isoform 1 [Homo sapiens] 30 8.6
gi|20070260 cofactor of BRCA1 [Homo sapiens] 30 8.6
gi|38569495 ELL associated factor 1 [Homo sapiens] 30 8.6
>gi|117553627 acetylserotonin O-methyltransferase-like [Homo
sapiens]
Length = 621
Score = 1243 bits (3216), Expect = 0.0
Identities = 621/621 (100%), Positives = 621/621 (100%)
Query: 1 MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME 60
MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME
Sbjct: 1 MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME 60
Query: 61 TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS 120
TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS
Sbjct: 61 TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS 120
Query: 121 VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA 180
VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA
Sbjct: 121 VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA 180
Query: 181 LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHDSIPAADTFEDLSD 240
LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHDSIPAADTFEDLSD
Sbjct: 181 LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHDSIPAADTFEDLSD 240
Query: 241 VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG 300
VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG
Sbjct: 241 VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG 300
Query: 301 LLTACKLKVFDLLKDEAPQKAADIASKVDASACGMERLLDICAAMGLLEKTEQGYSNTET 360
LLTACKLKVFDLLKDEAPQKAADIASKVDASACGMERLLDICAAMGLLEKTEQGYSNTET
Sbjct: 301 LLTACKLKVFDLLKDEAPQKAADIASKVDASACGMERLLDICAAMGLLEKTEQGYSNTET 360
Query: 361 ANVYLASDGEYSLHGFIMHNNDLTWNLFTYLEFAIREGTNQHHRALGKKAEDLFQDAYYQ 420
ANVYLASDGEYSLHGFIMHNNDLTWNLFTYLEFAIREGTNQHHRALGKKAEDLFQDAYYQ
Sbjct: 361 ANVYLASDGEYSLHGFIMHNNDLTWNLFTYLEFAIREGTNQHHRALGKKAEDLFQDAYYQ 420
Query: 421 SPETRLRFMRAMHGMTKLTACQVATAFNLSRFSSACDVGGCTGALARELAREYPRMQVTV 480
SPETRLRFMRAMHGMTKLTACQVATAFNLSRFSSACDVGGCTGALARELAREYPRMQVTV
Sbjct: 421 SPETRLRFMRAMHGMTKLTACQVATAFNLSRFSSACDVGGCTGALARELAREYPRMQVTV 480
Query: 481 FDLPDIIELAAHFQPPGPQAVQIHFAAGDFFRDPLPSAELYVLCRILHDWPDDKVHKLLS 540
FDLPDIIELAAHFQPPGPQAVQIHFAAGDFFRDPLPSAELYVLCRILHDWPDDKVHKLLS
Sbjct: 481 FDLPDIIELAAHFQPPGPQAVQIHFAAGDFFRDPLPSAELYVLCRILHDWPDDKVHKLLS 540
Query: 541 RVAESCKPGAGLLLVETLLDEEKRVAQRALMQSLNMLVQTEGKERSLGEYQCLLELHGFH 600
RVAESCKPGAGLLLVETLLDEEKRVAQRALMQSLNMLVQTEGKERSLGEYQCLLELHGFH
Sbjct: 541 RVAESCKPGAGLLLVETLLDEEKRVAQRALMQSLNMLVQTEGKERSLGEYQCLLELHGFH 600
Query: 601 QVQVVHLGGVLDAILATKVAP 621
QVQVVHLGGVLDAILATKVAP
Sbjct: 601 QVQVVHLGGVLDAILATKVAP 621
>gi|239752250 PREDICTED: similar to acetylserotonin
O-methyltransferase-like [Homo sapiens]
Length = 320
Score = 598 bits (1541), Expect = e-171
Identities = 299/300 (99%), Positives = 299/300 (99%)
Query: 1 MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME 60
MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME
Sbjct: 1 MVLCPVIGKLLHKRVVLASASPRRQEILSNAGLRFEVVPSKFKEKLDKASFATPYGYAME 60
Query: 61 TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS 120
TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS
Sbjct: 61 TAKQKALEVANRLYQKDLRAPDVVIGADTIVTVGGLILEKPVDKQDAYRMLSRLSGREHS 120
Query: 121 VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA 180
VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA
Sbjct: 121 VFTGVAIVHCSSKDHQLDTRVSEFYEETKVKFSELSEELLWEYVHSGEPMDKAGGYGIQA 180
Query: 181 LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHDSIPAADTFEDLSD 240
LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHD IPAADTFEDLSD
Sbjct: 181 LGGMLVESVHGDFLNVVGFPLNHFCKQLVKLYYPPRPEDLRRSVKHDPIPAADTFEDLSD 240
Query: 241 VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG 300
VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG
Sbjct: 241 VEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTRLLELIEGFMLSKG 300
>gi|157168360 acetylserotonin O-methyltransferase [Homo sapiens]
Length = 373
Score = 236 bits (603), Expect = 4e-62
Identities = 146/365 (40%), Positives = 201/365 (55%), Gaps = 37/365 (10%)
Query: 288 LLELIEGFMLSKGLLTACKLKVFDLLKDE-APQKAADIASKVDASACGMERLLDICAAMG 346
L + GFM+S+ L AC+L VFDLL + P A +A+ V ASA G E LLDIC ++
Sbjct: 12 LNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLK 71
Query: 347 LLEKTEQG----YSNTETANVYLASDGEYSLHGFIMHNNDLTWNLFTYLEFAIREGTNQH 402
LL+ +G Y NTE ++ YL + S + + ++ + +L A+REG NQ+
Sbjct: 72 LLKVETRGGKAFYRNTELSSDYLTTVSPTSQCSMLKYMGRTSYRCWGHLADAVREGRNQY 131
Query: 403 HRALGKKAEDLFQDAYYQSPETRLRFMRAMHGMTKLTACQVATAFNLSRFSSACDVGGC- 461
G AE+LF A Y+S RL+FM+A+ + + V TAF+LS F CD+GG
Sbjct: 132 LETFGVPAEELFT-AIYRSEGERLQFMQALQEVWSVNGRSVLTAFDLSVFPLMCDLGGTW 190
Query: 462 ---------------------------TGALARELAREYPRMQVTVFDLPDIIELAA-HF 493
GALA+E YP ++TVFD+P+++ A HF
Sbjct: 191 IKLETIILSKLSQGQKTKHRVFSLIGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHF 250
Query: 494 QPPGPQAVQIHFAAGDFFRDPLPSAELYVLCRILHDWPDDKVHKLLSRVAESCKPGAGLL 553
+ QI F GDFF+DPLP A+LY+L R+LHDW D K LL R+ +CKPG G+L
Sbjct: 251 S--FQEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGIL 308
Query: 554 LVETLLDEEKRVAQRALMQSLNMLVQTEGKERSLGEYQCLLELHGFHQVQVVHLGGVLDA 613
++E+LLDE++R + SLNMLVQTEG+ER+ Y LL GF Q G + DA
Sbjct: 309 VIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDA 368
Query: 614 ILATK 618
ILA K
Sbjct: 369 ILARK 373
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 217 PEDLRRSVKHDSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAE 261
PED+ + DS +DT D SD E G E RD G RD E
Sbjct: 259 PEDMDQDKHDDSTDDSDT--DKSDGESDGDEFVHRDNGERDNNEE 301
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 30.8 bits (68), Expect = 3.9
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 216 RPEDLRRSVKHDSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAECH 275
R + RRS++ +P+ GG+E G+ D + A AG+++ +C
Sbjct: 40 RQDPSRRSIRLRPLPSPSP-----SAAAGGTESRSSALGAADSEGPARGAGKSSTNGDCR 94
Query: 276 RTRETLPPFPTR 287
R R +L +R
Sbjct: 95 RFRGSLASLGSR 106
>gi|19923050 death effector domain-containing DNA binding protein 2
[Homo sapiens]
Length = 326
Score = 30.4 bits (67), Expect = 5.1
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 288 LLELIEGFMLSKGLLTACKLKVFDLLKDEAPQKAADIASKVDASACGMERLLDI 341
+L L F + G LT C+L++ L DEAP A +A + G+E LL++
Sbjct: 23 MLSLHRMFEVVGGQLTECELELLAFLLDEAPGAAGGLA----RARSGLELLLEL 72
>gi|41406057 amyloid beta A4 protein isoform c precursor [Homo
sapiens]
Length = 695
Score = 29.6 bits (65), Expect = 8.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 227 DSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAE 273
D++ +AD ED SDV GG++ D GS D+ E E + AE E
Sbjct: 194 DNVDSADAEEDDSDVWWGGADTDYAD-GSEDKVVEVAEE-EEVAEVE 238
>gi|41406055 amyloid beta A4 protein isoform b precursor [Homo
sapiens]
Length = 751
Score = 29.6 bits (65), Expect = 8.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 227 DSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAE 273
D++ +AD ED SDV GG++ D GS D+ E E + AE E
Sbjct: 194 DNVDSADAEEDDSDVWWGGADTDYAD-GSEDKVVEVAEE-EEVAEVE 238
>gi|4502167 amyloid beta A4 protein isoform a precursor [Homo
sapiens]
Length = 770
Score = 29.6 bits (65), Expect = 8.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 227 DSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAE 273
D++ +AD ED SDV GG++ D GS D+ E E + AE E
Sbjct: 194 DNVDSADAEEDDSDVWWGGADTDYAD-GSEDKVVEVAEE-EEVAEVE 238
>gi|209915570 amyloid beta A4 protein isoform e precursor [Homo
sapiens]
Length = 639
Score = 29.6 bits (65), Expect = 8.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 227 DSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAE 273
D++ +AD ED SDV GG++ D GS D+ E E + AE E
Sbjct: 138 DNVDSADAEEDDSDVWWGGADTDYAD-GSEDKVVEVAEE-EEVAEVE 182
>gi|209915573 amyloid beta A4 protein isoform f precursor [Homo
sapiens]
Length = 714
Score = 29.6 bits (65), Expect = 8.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 227 DSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAGEAGQATAEAE 273
D++ +AD ED SDV GG++ D GS D+ E E + AE E
Sbjct: 138 DNVDSADAEEDDSDVWWGGADTDYAD-GSEDKVVEVAEE-EEVAEVE 182
>gi|239743051 PREDICTED: hypothetical protein XP_002342747 [Homo
sapiens]
Length = 306
Score = 29.6 bits (65), Expect = 8.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 243 GGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTR 287
G GS P+ G++D + EA A T+ HRT + P P R
Sbjct: 52 GSGSSPSADQQGAQDREEEAAAAPAPTSRG--HRTEKRKPQQPQR 94
>gi|239508698 PREDICTED: similar to mucin [Homo sapiens]
Length = 265
Score = 29.6 bits (65), Expect = 8.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 243 GGGSEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETLPPFPTR 287
G GS P+ G++D + EA A T+ HRT + P P R
Sbjct: 123 GSGSSPSADQQGAQDREEEAAAAPAPTSRG--HRTEKRKPQQPQR 165
>gi|22749353 phospholipase D5 [Homo sapiens]
Length = 444
Score = 29.6 bits (65), Expect = 8.6
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 362 NVYLASDGEYSLHGFIMHNNDLTWNLFTYLEFAIREGTNQHHRALGKKAEDLFQDAYY 419
N Y+ +DG + F ND T N T L I + +++R++ K+ +D+F+ +Y
Sbjct: 348 NKYMVTDGAAYIGNFDWVGNDFTQNAGTGL--VINQADVRNNRSIIKQLKDVFERDWY 403
>gi|33469141 COBW domain-containing protein 2 [Homo sapiens]
Length = 395
Score = 29.6 bits (65), Expect = 8.6
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 521 YVLCRILHDWPDDKVHKLLSRVAESCKPGAGLLLVETLLDEEKRVAQRALMQSLNMLVQT 580
Y L + + PD +++ +VA + A L+ L+ EE RA ++S+N L Q
Sbjct: 173 YGLKHLAEEKPDGLINEATRQVALA---DAILINKTDLVPEEDVKKLRATIRSINGLGQI 229
Query: 581 EGKERSLGEYQCLLELHGFHQVQVVHLGGVLDAILATK 618
+RS + +L+LH F + + L L + T+
Sbjct: 230 LETQRSRVDLSNVLDLHAFDSLSGISLQKKLQHVPGTQ 267
>gi|38201621 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 29.6 bits (65), Expect = 8.6
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 246 SEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETL-----PPFPTRLLELIEGFMLSKG 300
+ P Q + +E+ E GEAG+A EAE + E L P P L + +E ++
Sbjct: 449 TSPAQEEEMEEEEEEEEGEAGEA-GEAESEKGGEELLPPESTPIPANLSQNLEAAAATQV 507
Query: 301 LLTACK--LKVFDLLKDEA 317
++ K K+ +L K EA
Sbjct: 508 AVSVPKRRRKIKELNKKEA 526
>gi|38201627 eukaryotic translation initiation factor 4 gamma, 1
isoform 2 [Homo sapiens]
Length = 1512
Score = 29.6 bits (65), Expect = 8.6
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 246 SEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETL-----PPFPTRLLELIEGFMLSKG 300
+ P Q + +E+ E GEAG+A EAE + E L P P L + +E ++
Sbjct: 362 TSPAQEEEMEEEEEEEEGEAGEA-GEAESEKGGEELLPPESTPIPANLSQNLEAAAATQV 420
Query: 301 LLTACK--LKVFDLLKDEA 317
++ K K+ +L K EA
Sbjct: 421 AVSVPKRRRKIKELNKKEA 439
>gi|38201625 eukaryotic translation initiation factor 4 gamma, 1
isoform 3 [Homo sapiens]
Length = 1435
Score = 29.6 bits (65), Expect = 8.6
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 246 SEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETL-----PPFPTRLLELIEGFMLSKG 300
+ P Q + +E+ E GEAG+A EAE + E L P P L + +E ++
Sbjct: 285 TSPAQEEEMEEEEEEEEGEAGEA-GEAESEKGGEELLPPESTPIPANLSQNLEAAAATQV 343
Query: 301 LLTACK--LKVFDLLKDEA 317
++ K K+ +L K EA
Sbjct: 344 AVSVPKRRRKIKELNKKEA 362
>gi|38201623 eukaryotic translation initiation factor 4 gamma, 1
isoform 1 [Homo sapiens]
Length = 1599
Score = 29.6 bits (65), Expect = 8.6
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 246 SEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETL-----PPFPTRLLELIEGFMLSKG 300
+ P Q + +E+ E GEAG+A EAE + E L P P L + +E ++
Sbjct: 449 TSPAQEEEMEEEEEEEEGEAGEA-GEAESEKGGEELLPPESTPIPANLSQNLEAAAATQV 507
Query: 301 LLTACK--LKVFDLLKDEA 317
++ K K+ +L K EA
Sbjct: 508 AVSVPKRRRKIKELNKKEA 526
>gi|38201619 eukaryotic translation initiation factor 4 gamma, 1
isoform 4 [Homo sapiens]
Length = 1403
Score = 29.6 bits (65), Expect = 8.6
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 246 SEPTQRDAGSRDEKAEAGEAGQATAEAECHRTRETL-----PPFPTRLLELIEGFMLSKG 300
+ P Q + +E+ E GEAG+A EAE + E L P P L + +E ++
Sbjct: 253 TSPAQEEEMEEEEEEEEGEAGEA-GEAESEKGGEELLPPESTPIPANLSQNLEAAAATQV 311
Query: 301 LLTACK--LKVFDLLKDEA 317
++ K K+ +L K EA
Sbjct: 312 AVSVPKRRRKIKELNKKEA 330
>gi|148612857 sickle tail isoform 3 [Homo sapiens]
Length = 1309
Score = 29.6 bits (65), Expect = 8.6
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 210 KLYYPPRPEDLRRSVKHDSIPAADTFEDLSDVEGGGSEPTQRDAGSR 256
KL + P+P L V+H S +AD+ E +S+ G PT GSR
Sbjct: 123 KLSHSPQPPSLGDPVEHLSETSADSLEAMSE----GDAPTPFSRGSR 165
>gi|148612813 sickle tail isoform 2 [Homo sapiens]
Length = 1264
Score = 29.6 bits (65), Expect = 8.6
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 210 KLYYPPRPEDLRRSVKHDSIPAADTFEDLSDVEGGGSEPTQRDAGSR 256
KL + P+P L V+H S +AD+ E +S+ G PT GSR
Sbjct: 43 KLSHSPQPPSLGDPVEHLSETSADSLEAMSE----GDAPTPFSRGSR 85
>gi|50843820 sickle tail isoform 1 [Homo sapiens]
Length = 1943
Score = 29.6 bits (65), Expect = 8.6
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 210 KLYYPPRPEDLRRSVKHDSIPAADTFEDLSDVEGGGSEPTQRDAGSR 256
KL + P+P L V+H S +AD+ E +S+ G PT GSR
Sbjct: 123 KLSHSPQPPSLGDPVEHLSETSADSLEAMSE----GDAPTPFSRGSR 165
>gi|20070260 cofactor of BRCA1 [Homo sapiens]
Length = 580
Score = 29.6 bits (65), Expect = 8.6
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 19 SASPRRQEILSNA-----GLRFEVVPSKFKEKLDKASFATPYGYAMETAKQKALEVANRL 73
+ASPR++ + +A L V PSK E L KA P G + E K+ ++ +L
Sbjct: 492 TASPRKENVHRHALRLLIHLHPRVAPSKL-EALQKA--LEPTGQSGEAVKELYSQLGEKL 548
Query: 74 YQKDLRAPDVVIGADT 89
Q D R P A+T
Sbjct: 549 EQLDHRKPSPAQAAET 564
>gi|38569495 ELL associated factor 1 [Homo sapiens]
Length = 268
Score = 29.6 bits (65), Expect = 8.6
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 215 PRPEDLRRSVKHDSIPAADTFEDLSDVEGGGSEPTQRDAGSRDEKAEAG--EAGQATAEA 272
P PE +K + D E +S G S ++ +GS D+ + +G + G A+
Sbjct: 164 PSPEPQLDDIKRELRAEVDIIEQMSSSSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQ 223
Query: 273 ECHR 276
H+
Sbjct: 224 PSHQ 227
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,515,415
Number of Sequences: 37866
Number of extensions: 1062395
Number of successful extensions: 2847
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2825
Number of HSP's gapped (non-prelim): 34
length of query: 621
length of database: 18,247,518
effective HSP length: 108
effective length of query: 513
effective length of database: 14,157,990
effective search space: 7263048870
effective search space used: 7263048870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.