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Search of human proteins with 10863877
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10863877 phospholipid scramblase 1 [Homo sapiens]
(318 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10863877 phospholipid scramblase 1 [Homo sapiens] 689 0.0
gi|9966795 phospholipid scramblase 2 [Homo sapiens] 409 e-114
gi|146229354 phospholipid scramblase family, member 5 [Homo sapi... 313 2e-85
gi|31543417 phospholipid scramblase 3 [Homo sapiens] 292 2e-79
gi|190341019 phospholipid scramblase 4 isoform a [Homo sapiens] 288 3e-78
gi|190194379 phospholipid scramblase 4 isoform a [Homo sapiens] 288 3e-78
gi|190194377 phospholipid scramblase 4 isoform a [Homo sapiens] 288 3e-78
gi|190194381 phospholipid scramblase 4 isoform b [Homo sapiens] 137 1e-32
gi|239742160 PREDICTED: similar to hCG1794790 [Homo sapiens] 105 7e-23
gi|239753717 PREDICTED: similar to hCG1794790 [Homo sapiens] 101 8e-22
gi|239748259 PREDICTED: similar to hCG1794790 [Homo sapiens] 101 8e-22
gi|11386183 WAS protein family, member 2 [Homo sapiens] 52 5e-07
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 51 1e-06
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 47 2e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 47 2e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 47 2e-05
gi|115430223 galectin 3 [Homo sapiens] 47 3e-05
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 47 3e-05
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 47 3e-05
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 46 4e-05
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 46 4e-05
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 46 4e-05
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 46 4e-05
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 46 5e-05
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 46 5e-05
gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens] 45 7e-05
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 45 9e-05
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 45 9e-05
gi|210032580 SET domain containing 1B [Homo sapiens] 45 9e-05
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 45 9e-05
>gi|10863877 phospholipid scramblase 1 [Homo sapiens]
Length = 318
Score = 689 bits (1779), Expect = 0.0
Identities = 318/318 (100%), Positives = 318/318 (100%)
Query: 1 MDKQNSQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAG 60
MDKQNSQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAG
Sbjct: 1 MDKQNSQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAG 60
Query: 61 FPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVL 120
FPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVL
Sbjct: 61 FPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVL 120
Query: 121 TGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLR 180
TGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLR
Sbjct: 121 TGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLR 180
Query: 181 CSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCC 240
CSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCC
Sbjct: 181 CSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCC 240
Query: 241 GDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGACFLI 300
GDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGACFLI
Sbjct: 241 GDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGACFLI 300
Query: 301 DFMFFESTGSQEQKSGVW 318
DFMFFESTGSQEQKSGVW
Sbjct: 301 DFMFFESTGSQEQKSGVW 318
>gi|9966795 phospholipid scramblase 2 [Homo sapiens]
Length = 224
Score = 409 bits (1050), Expect = e-114
Identities = 189/223 (84%), Positives = 203/223 (91%)
Query: 86 MPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAAED 145
MPAP PPLNCPPGLEYLSQID ILIHQQIELLEVL FE++N YEIKNSFGQR+YFAAED
Sbjct: 1 MPAPPPPLNCPPGLEYLSQIDMILIHQQIELLEVLFSFESSNMYEIKNSFGQRIYFAAED 60
Query: 146 TDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCSSCCCPCCLQEIEIQAPPGVPIGY 205
T+ C RNCCG SRPFTLRI DN+G+EVITLERPLRC+ CCCPCCLQEIEIQAPPGVP+GY
Sbjct: 61 TNFCIRNCCGRSRPFTLRITDNVGREVITLERPLRCNCCCCPCCLQEIEIQAPPGVPVGY 120
Query: 206 VIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCCGDVDFEIKSLDEQCVVGKISKHWTG 265
V QTWHPCL KFTI+N+KREDVLKISGPC+VCSC VDFEI SLDEQ VVG+ISKHW+G
Sbjct: 121 VTQTWHPCLTKFTIKNQKREDVLKISGPCIVCSCIAGVDFEITSLDEQIVVGRISKHWSG 180
Query: 266 ILREAFTDADNFGIQFPLDLDVKMKAVMIGACFLIDFMFFEST 308
LREAFTDADNFGIQFP DLDVKMKAVMIGACFLID+MFFE T
Sbjct: 181 FLREAFTDADNFGIQFPRDLDVKMKAVMIGACFLIDYMFFERT 223
>gi|146229354 phospholipid scramblase family, member 5 [Homo
sapiens]
Length = 271
Score = 313 bits (801), Expect = 2e-85
Identities = 149/250 (59%), Positives = 183/250 (73%), Gaps = 6/250 (2%)
Query: 60 GFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ---PPLNCPPGLEYLSQIDQILIHQQIEL 116
G P P+Q + P + P A +P P P ++ PPGLEYLSQ+D I+IHQQ+EL
Sbjct: 19 GAPDPDQSL---PASSNPGNQAWQLSLPLPSSFLPTVSLPPGLEYLSQLDLIIIHQQVEL 75
Query: 117 LEVLTGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLE 176
L ++ G ET+NKYEIKNS GQR+YFA E++ C R C R TLRI DN G+EVIT+
Sbjct: 76 LGMILGTETSNKYEIKNSLGQRIYFAVEESICFNRTFCSTLRSCTLRITDNSGREVITVN 135
Query: 177 RPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVV 236
RPLRC+SC CPC LQE+EIQAPPG +GYV Q W P LPKFTIQN +ED+LKI GPCV
Sbjct: 136 RPLRCNSCWCPCYLQELEIQAPPGTIVGYVTQKWDPFLPKFTIQNANKEDILKIVGPCVT 195
Query: 237 CSCCGDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGA 296
C C GDVDFE+K+++E+ +GKISK+W+G + + FT+ADNFGI P DLDV +KA MIGA
Sbjct: 196 CGCFGDVDFEVKTINEKLTIGKISKYWSGFVNDVFTNADNFGIHVPADLDVTVKAAMIGA 255
Query: 297 CFLIDFMFFE 306
CFL DFMFFE
Sbjct: 256 CFLFDFMFFE 265
>gi|31543417 phospholipid scramblase 3 [Homo sapiens]
Length = 295
Score = 292 bits (748), Expect = 2e-79
Identities = 150/298 (50%), Positives = 193/298 (64%), Gaps = 24/298 (8%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQ---PVYNQPVY 74
P GY P PP + PGY P PA H GPG A PVP Q P ++
Sbjct: 7 PKGYAPS-PPPPYPVTPGY-----------PEPALHPGPGQA--PVPAQVPAPAPGFALF 52
Query: 75 NQPVGAA---GVPWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEI 131
P A P++P P P GLE+L QIDQILIHQ+ E +E G+ET N+YE+
Sbjct: 53 PSPGPVALGSAAPFLPLP----GVPSGLEFLVQIDQILIHQKAERVETFLGWETCNRYEL 108
Query: 132 KNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCSSCCCPCCLQ 191
++ GQ + AAE+++CC R CCG RP +R+ D +EV+ L RPL C CCPC LQ
Sbjct: 109 RSGAGQPLGQAAEESNCCARLCCGARRPLRVRLADPGDREVLRLLRPLHCGCSCCPCGLQ 168
Query: 192 EIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCCGDVDFEIKSLD 251
E+E+QAPPG IG+V+QTWHP LPKF+IQ+ R+ VL++ GPC C C D +FE+K+ D
Sbjct: 169 EMEVQAPPGTTIGHVLQTWHPFLPKFSIQDADRQTVLRVVGPCWTCGCGTDTNFEVKTRD 228
Query: 252 EQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGACFLIDFMFFESTG 309
E VG+ISK W G++REA TDAD+FG+QFPLDLDV++KAV++GA FLID+MFFE G
Sbjct: 229 ESRSVGRISKQWGGLVREALTDADDFGLQFPLDLDVRVKAVLLGATFLIDYMFFEKRG 286
>gi|190341019 phospholipid scramblase 4 isoform a [Homo sapiens]
Length = 329
Score = 288 bits (738), Expect = 3e-78
Identities = 147/312 (47%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 22 PPQYPPTAFQGPPGYSGY--PGPQVSYPPPPAGHSGPGPAGFPVPNQPV----------- 68
PP P A PP Y+ + PGP + PPP G+ G P G+ P QP
Sbjct: 22 PPDPRPDA---PPEYNSHFLPGPPGTAVPPPTGYPGGLPMGYYSPQQPSTFPLYQPVGGI 78
Query: 69 ----YNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFE 124
Y Y P + + WMP P P NCPPGLEYL Q+D I + Q E LE++T FE
Sbjct: 79 HPVRYQPGKYPMPNQSVPITWMPGPTPMANCPPGLEYLVQLDNIHVLQHFEPLEMMTCFE 138
Query: 125 TNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCSSC 184
TNN+Y+IKN+ Q VY EDTD TRN RPF LR+ D MG+E++T++RP RC+ C
Sbjct: 139 TNNRYDIKNNSDQMVYIVTEDTDDFTRNAYRTLRPFVLRVTDCMGREIMTMQRPFRCTCC 198
Query: 185 --CCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCCGD 242
CCP QE+E+Q PPGV IG+V + W+ C ++IQNEK+E+V+++ GPC C D
Sbjct: 199 CFCCPSARQELEVQCPPGVTIGFVAEHWNLCRAVYSIQNEKKENVMRVRGPCSTYGCGSD 258
Query: 243 VDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGACFLIDF 302
FE+KSLD +G I + W G+L A DAD+F I FPLDLDVKMKA++ GACFLIDF
Sbjct: 259 SVFEVKSLDGISNIGSIIRKWNGLL-SAMADADHFDIHFPLDLDVKMKAMIFGACFLIDF 317
Query: 303 MFFESTGSQEQK 314
M+FE + Q +
Sbjct: 318 MYFERSPPQRSR 329
>gi|190194379 phospholipid scramblase 4 isoform a [Homo sapiens]
Length = 329
Score = 288 bits (738), Expect = 3e-78
Identities = 147/312 (47%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 22 PPQYPPTAFQGPPGYSGY--PGPQVSYPPPPAGHSGPGPAGFPVPNQPV----------- 68
PP P A PP Y+ + PGP + PPP G+ G P G+ P QP
Sbjct: 22 PPDPRPDA---PPEYNSHFLPGPPGTAVPPPTGYPGGLPMGYYSPQQPSTFPLYQPVGGI 78
Query: 69 ----YNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFE 124
Y Y P + + WMP P P NCPPGLEYL Q+D I + Q E LE++T FE
Sbjct: 79 HPVRYQPGKYPMPNQSVPITWMPGPTPMANCPPGLEYLVQLDNIHVLQHFEPLEMMTCFE 138
Query: 125 TNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCSSC 184
TNN+Y+IKN+ Q VY EDTD TRN RPF LR+ D MG+E++T++RP RC+ C
Sbjct: 139 TNNRYDIKNNSDQMVYIVTEDTDDFTRNAYRTLRPFVLRVTDCMGREIMTMQRPFRCTCC 198
Query: 185 --CCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCCGD 242
CCP QE+E+Q PPGV IG+V + W+ C ++IQNEK+E+V+++ GPC C D
Sbjct: 199 CFCCPSARQELEVQCPPGVTIGFVAEHWNLCRAVYSIQNEKKENVMRVRGPCSTYGCGSD 258
Query: 243 VDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGACFLIDF 302
FE+KSLD +G I + W G+L A DAD+F I FPLDLDVKMKA++ GACFLIDF
Sbjct: 259 SVFEVKSLDGISNIGSIIRKWNGLL-SAMADADHFDIHFPLDLDVKMKAMIFGACFLIDF 317
Query: 303 MFFESTGSQEQK 314
M+FE + Q +
Sbjct: 318 MYFERSPPQRSR 329
>gi|190194377 phospholipid scramblase 4 isoform a [Homo sapiens]
Length = 329
Score = 288 bits (738), Expect = 3e-78
Identities = 147/312 (47%), Positives = 190/312 (60%), Gaps = 23/312 (7%)
Query: 22 PPQYPPTAFQGPPGYSGY--PGPQVSYPPPPAGHSGPGPAGFPVPNQPV----------- 68
PP P A PP Y+ + PGP + PPP G+ G P G+ P QP
Sbjct: 22 PPDPRPDA---PPEYNSHFLPGPPGTAVPPPTGYPGGLPMGYYSPQQPSTFPLYQPVGGI 78
Query: 69 ----YNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFE 124
Y Y P + + WMP P P NCPPGLEYL Q+D I + Q E LE++T FE
Sbjct: 79 HPVRYQPGKYPMPNQSVPITWMPGPTPMANCPPGLEYLVQLDNIHVLQHFEPLEMMTCFE 138
Query: 125 TNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCSSC 184
TNN+Y+IKN+ Q VY EDTD TRN RPF LR+ D MG+E++T++RP RC+ C
Sbjct: 139 TNNRYDIKNNSDQMVYIVTEDTDDFTRNAYRTLRPFVLRVTDCMGREIMTMQRPFRCTCC 198
Query: 185 --CCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCCGD 242
CCP QE+E+Q PPGV IG+V + W+ C ++IQNEK+E+V+++ GPC C D
Sbjct: 199 CFCCPSARQELEVQCPPGVTIGFVAEHWNLCRAVYSIQNEKKENVMRVRGPCSTYGCGSD 258
Query: 243 VDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGACFLIDF 302
FE+KSLD +G I + W G+L A DAD+F I FPLDLDVKMKA++ GACFLIDF
Sbjct: 259 SVFEVKSLDGISNIGSIIRKWNGLL-SAMADADHFDIHFPLDLDVKMKAMIFGACFLIDF 317
Query: 303 MFFESTGSQEQK 314
M+FE + Q +
Sbjct: 318 MYFERSPPQRSR 329
>gi|190194381 phospholipid scramblase 4 isoform b [Homo sapiens]
Length = 239
Score = 137 bits (346), Expect = 1e-32
Identities = 64/125 (51%), Positives = 87/125 (69%), Gaps = 1/125 (0%)
Query: 190 LQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCCGDVDFEIKS 249
L ++E+Q PPGV IG+V + W+ C ++IQNEK+E+V+++ GPC C D FE+KS
Sbjct: 116 LVQLEVQCPPGVTIGFVAEHWNLCRAVYSIQNEKKENVMRVRGPCSTYGCGSDSVFEVKS 175
Query: 250 LDEQCVVGKISKHWTGILREAFTDADNFGIQFPLDLDVKMKAVMIGACFLIDFMFFESTG 309
LD +G I + W G+L A DAD+F I FPLDLDVKMKA++ GACFLIDFM+FE +
Sbjct: 176 LDGISNIGSIIRKWNGLL-SAMADADHFDIHFPLDLDVKMKAMIFGACFLIDFMYFERSP 234
Query: 310 SQEQK 314
Q +
Sbjct: 235 PQRSR 239
Score = 66.6 bits (161), Expect = 3e-11
Identities = 38/102 (37%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 22 PPQYPPTAFQGPPGYSGY--PGPQVSYPPPPAGHSGPGPAGFPVPNQPV----------- 68
PP P A PP Y+ + PGP + PPP G+ G P G+ P QP
Sbjct: 22 PPDPRPDA---PPEYNSHFLPGPPGTAVPPPTGYPGGLPMGYYSPQQPSTFPLYQPVGGI 78
Query: 69 ----YNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYLSQID 106
Y Y P + + WMP P P NCPPGLEYL Q++
Sbjct: 79 HPVRYQPGKYPMPNQSVPITWMPGPTPMANCPPGLEYLVQLE 120
>gi|239742160 PREDICTED: similar to hCG1794790 [Homo sapiens]
Length = 172
Score = 105 bits (261), Expect = 7e-23
Identities = 48/99 (48%), Positives = 67/99 (67%)
Query: 84 PWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAA 143
PW+ P+ +CP GLEYL QI+Q+ + Q + L VL FET+ YEI N+ GQR+YFA
Sbjct: 8 PWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQGQRIYFAE 67
Query: 144 EDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCS 182
E +C R+ CG S PFT+ I DN+G++V+ L + L+CS
Sbjct: 68 ERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCS 106
>gi|239753717 PREDICTED: similar to hCG1794790 [Homo sapiens]
Length = 172
Score = 101 bits (252), Expect = 8e-22
Identities = 47/99 (47%), Positives = 66/99 (66%)
Query: 84 PWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAA 143
PW+ P+ +CP GLEYL QI+Q+ + Q + L VL FET+ YEI N+ QR+YFA
Sbjct: 8 PWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQVQRIYFAE 67
Query: 144 EDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCS 182
E +C R+ CG S PFT+ I DN+G++V+ L + L+CS
Sbjct: 68 ERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCS 106
>gi|239748259 PREDICTED: similar to hCG1794790 [Homo sapiens]
Length = 172
Score = 101 bits (252), Expect = 8e-22
Identities = 47/99 (47%), Positives = 66/99 (66%)
Query: 84 PWMPAPQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAA 143
PW+ P+ +CP GLEYL QI+Q+ + Q + L VL FET+ YEI N+ QR+YFA
Sbjct: 8 PWLSTPETITSCPLGLEYLHQINQLTVCQHFDPLGVLRKFETSKTYEILNNQVQRIYFAE 67
Query: 144 EDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCS 182
E +C R+ CG S PFT+ I DN+G++V+ L + L+CS
Sbjct: 68 ERNNCFLRHLCGFSSPFTMTIYDNVGRDVLALHKALKCS 106
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 52.4 bits (124), Expect = 5e-07
Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 3 KQNSQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSY--PPPPAGHSGPG--- 57
K++S ++ SHP P+G PP P F PP P P + PPPP G PG
Sbjct: 290 KRSSVVSPSHPPPAPPLGSPPG-PKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPP 348
Query: 58 -PAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
P+ P P + P P AA P + P PPL+ P G
Sbjct: 349 PPSPPSFPPHPDFAAPPPPPPPPAADYPTL--PPPPLSQPTG 388
Score = 50.8 bits (120), Expect = 2e-06
Identities = 31/79 (39%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 19 VGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPV 78
+G PP PP F G PG P P S+PP P + P P P + P P +QP
Sbjct: 330 IGIPPPPPPVGF-GSPGTPPPPSPP-SFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPT 387
Query: 79 GAAGVPWMPAPQPPLNCPP 97
G G P P P PP PP
Sbjct: 388 G--GAPPPPPPPPPPGPPP 404
Score = 37.4 bits (85), Expect = 0.018
Identities = 33/92 (35%), Positives = 36/92 (39%), Gaps = 28/92 (30%)
Query: 35 GYSGYPGPQV---------------SYPPPPAGHSGPGPA-GFPVPNQP----VYNQPVY 74
G SGYP V SYPPPP S P+ F N P ++ PV
Sbjct: 220 GTSGYPPTLVYQNGSIGCVENVDASSYPPPPQSDSASSPSPSFSEDNLPPPPAEFSYPVD 279
Query: 75 NQ-PVGAAG-------VPWMPAPQPPLNCPPG 98
NQ G AG P P P PPL PPG
Sbjct: 280 NQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPG 311
Score = 36.6 bits (83), Expect = 0.030
Identities = 39/109 (35%), Positives = 44/109 (40%), Gaps = 24/109 (22%)
Query: 6 SQMNASHPETNLPVGYPPQYPPTAFQGPPGY---SGYPGPQ------VSYPPP-PAGHSG 55
S + S E NLP PP F P SG GP+ S+PPP P S
Sbjct: 256 SSPSPSFSEDNLPP------PPAEFSYPVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSP 309
Query: 56 PGP-AGF------PVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPP 97
PGP GF P P P+ P PVG G P P P P + PP
Sbjct: 310 PGPKPGFAPPPAPPPPPPPMIGIPPPPPPVG-FGSPGTPPPPSPPSFPP 357
Score = 31.6 bits (70), Expect = 0.97
Identities = 25/78 (32%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 18 PVGYPPQYPPTA-FQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQ 76
P PP +PP F PP P PPP G A P P P P
Sbjct: 348 PPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPPGPP---- 403
Query: 77 PVGAAGVPWMPAPQPPLN 94
P G PA PPL+
Sbjct: 404 PPPFTGADGQPAIPPPLS 421
Score = 30.4 bits (67), Expect = 2.2
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 22/85 (25%)
Query: 25 YPPTAFQGPPGYSGYPGPQVSY-----PPPPA------------GHSGPGPAGFPVPNQP 67
YPP PP P S+ PPPPA G +GP + P+ P
Sbjct: 246 YPP-----PPQSDSASSPSPSFSEDNLPPPPAEFSYPVDNQRGSGLAGPKRSSVVSPSHP 300
Query: 68 VYNQPVYNQPVGAAGVPWMPAPQPP 92
P+ + P G PAP PP
Sbjct: 301 PPAPPLGSPPGPKPGFAPPPAPPPP 325
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 51.2 bits (121), Expect = 1e-06
Identities = 37/102 (36%), Positives = 44/102 (43%), Gaps = 16/102 (15%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYN------ 70
PVG+P P F GPPG G PG PP G +G PGP G P P V +
Sbjct: 1326 PVGFPGPQGPHGFPGPPGEKGLPG-----PPGRKGPTGLPGPRGEPGPPADVDDCPRIPG 1380
Query: 71 ---QPVYNQPVGAAGVPWMPAPQ-PPLNCPPGLEYLSQIDQI 108
P P GA G+P M P P PGL+ +D +
Sbjct: 1381 LPGAPGMRGPEGAMGLPGMRGPSGPGCKGEPGLDGRRGVDGV 1422
Score = 45.1 bits (105), Expect = 9e-05
Identities = 34/91 (37%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 18 PVGYP--------PQYPPTAFQGPPGYSGYPGPQ-VSYPPPPAGHSGPGPAGFPVPNQP- 67
PVG P P P + GP G G PGP S PP PAG +G P P P P
Sbjct: 1202 PVGIPGLKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPG 1261
Query: 68 VYNQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
P + P GA G P +P L PG
Sbjct: 1262 DQGPPGPDGPRGAPGPPGLPGSVDLLRGEPG 1292
Score = 44.7 bits (104), Expect = 1e-04
Identities = 28/81 (34%), Positives = 33/81 (40%), Gaps = 12/81 (14%)
Query: 19 VGYPPQYPPTAFQGPPGYSGYPGPQ-----------VSYPPPPAGHSGPGPAGFPVP-NQ 66
V YP ++ P F GPPG G+PGPQ P P PGP GF
Sbjct: 670 VTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFRGDMGD 729
Query: 67 PVYNQPVYNQPVGAAGVPWMP 87
P + + PVG G P P
Sbjct: 730 PGFGGEKGSSPVGPPGPPGSP 750
Score = 41.2 bits (95), Expect = 0.001
Identities = 30/91 (32%), Positives = 36/91 (39%), Gaps = 15/91 (16%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPG--------PQVSYPPPPAGHSGPGPAGFPVPNQPVYNQ 71
G P P GPPGY G+PG V +P P H PGP G + +
Sbjct: 1295 GLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQGPHGFPGPPG----EKGLPGP 1350
Query: 72 PVYNQPVGAAGVPWMPAPQPPL-NCP--PGL 99
P P G G P P + +CP PGL
Sbjct: 1351 PGRKGPTGLPGPRGEPGPPADVDDCPRIPGL 1381
Score = 40.4 bits (93), Expect = 0.002
Identities = 35/94 (37%), Positives = 41/94 (43%), Gaps = 19/94 (20%)
Query: 26 PPTAFQGPPGYSGYPG-----PQVSYPPPP----------AGHSG-PGPAGFP-VPNQPV 68
PP +GPPG G+PG V P PP AG G PGP GFP +P P
Sbjct: 361 PPLPLKGPPGDPGFPGRYGETGDVGPPGPPGLLGRPGEACAGMIGPPGPQGFPGLPGLP- 419
Query: 69 YNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYL 102
+ +P A G P P P L PGL+ L
Sbjct: 420 GEAGIPGRPDSAPGKPGKPG-SPGLPGAPGLQGL 452
Score = 40.0 bits (92), Expect = 0.003
Identities = 32/99 (32%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Query: 9 NASHPETNLPVGYPPQYPPTAFQGPPGYSGYPG----------PQVSYPPPPAGHSG-PG 57
+A P P G+ + G PG GYPG P PP PAG G PG
Sbjct: 814 HAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPG 873
Query: 58 PAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCP 96
G P + P P P G G+P P P+ P P
Sbjct: 874 LPGRPGAHGPP-GLPGIPGPFGDDGLPGPPGPKGPRGLP 911
Score = 36.2 bits (82), Expect = 0.040
Identities = 32/96 (33%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQ--VSYPPPPAGHSGP-GPAGFP-VPNQPVY------ 69
G P GPPG+SG G + PA H GP GP G P P P +
Sbjct: 1045 GLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPASHFGPPGPKGEPGSPGCPGHFGASGE 1104
Query: 70 -NQPVYNQPVGAAGVPWMPAPQPPLNCP-----PGL 99
P P G+ G P P P CP PGL
Sbjct: 1105 QGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGL 1140
Score = 35.0 bits (79), Expect = 0.088
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 17/71 (23%)
Query: 32 GPPGYSGYPGP--------QVSYPPPPAGH--SGPGPAGFPVPNQPVYNQPVYNQPVGAA 81
GPPG+ G PG + P PP H + PG GFP P P P PVG
Sbjct: 575 GPPGFPGQPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGP----PGKAGPVGPP 630
Query: 82 GVPWMPAPQPP 92
G+ + P PP
Sbjct: 631 GLGF---PGPP 638
Score = 35.0 bits (79), Expect = 0.088
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSY-PPPPAGHSGPGPAGFPVPNQPVYNQPV-YN 75
P G+P Q G G G PGP + P G PGP G P PV + +
Sbjct: 576 PPGFPGQPGSHGRDGHAGEKGDPGPPGDHEDATPGGKGFPGPLGPPGKAGPVGPPGLGFP 635
Query: 76 QPVGAAGVPWMPAPQPPLNCPPGLE 100
P G G P +P P + P GL+
Sbjct: 636 GPPGERGHPGVPG-HPGVRGPDGLK 659
Score = 35.0 bits (79), Expect = 0.088
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 20 GYPPQYPPTAF-QGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFP-VPNQPVYNQPVYNQ 76
G P +Y P F +G PG G PGP PP P G +G G GFP +P +P
Sbjct: 1002 GEPGRYGPPGFHRGEPGEKGQPGP--PGPPGPPGSTGLRGFIGFPGLPGD--QGEPGSPG 1057
Query: 77 PVGAAGVPWMPAPQ 90
P G +G+ P+
Sbjct: 1058 PPGFSGIDGARGPK 1071
Score = 34.3 bits (77), Expect = 0.15
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 31 QGPPGYSGYPGPQVSYPPP--PAGHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPA 88
QGP G G PGP S PP P H PG G P + P G G P +P
Sbjct: 1111 QGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQP-------GEMGDPGPRGLQGDPGIPG 1163
Query: 89 PQPPLNCPPG 98
P P + P G
Sbjct: 1164 P-PGIKGPSG 1172
Score = 33.9 bits (76), Expect = 0.20
Identities = 34/109 (31%), Positives = 38/109 (34%), Gaps = 38/109 (34%)
Query: 18 PVGYP----PQYPP-TAFQGPPGYSGYPGP----------------------QVSYP--- 47
P+G P P PP F GPPG G+PG V+YP
Sbjct: 617 PLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHPGVRGPDGLKGQKGDTISCNVTYPGRH 676
Query: 48 PPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPA----PQPP 92
PP PGP GFP P P + G G P P P PP
Sbjct: 677 GPPGFDGPPGPKGFPGPQ----GAPGLSGSDGHKGRPGTPGTAEIPGPP 721
Score = 33.5 bits (75), Expect = 0.26
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 32 GPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ 90
G PG+ G G PP P G G G G +P P + G +GVP + P+
Sbjct: 728 GDPGFGGEKGSSPVGPPGPPGSPGVNGQKG--IPGDPAFGHLGPPGKRGLSGVPGIKGPR 785
Query: 91 PPLNCP 96
CP
Sbjct: 786 GDPGCP 791
Score = 32.0 bits (71), Expect = 0.75
Identities = 27/97 (27%), Positives = 32/97 (32%), Gaps = 31/97 (31%)
Query: 27 PTAFQGPPGYSGYPG-----------------PQVSYPPPPAGHSG----------PGPA 59
P +G PG G PG P PP P G+ G GP
Sbjct: 1268 PDGPRGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPV 1327
Query: 60 GFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCP 96
GFP P P + P G G+P P + P P
Sbjct: 1328 GFPGPQGP----HGFPGPPGEKGLPGPPGRKGPTGLP 1360
Score = 31.6 bits (70), Expect = 0.97
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGF 61
G P P +G G GYPG P PP PGP GF
Sbjct: 1421 GVPGSPGPPGRKGDTGEDGYPGG----PGPPGPIGDPGPKGF 1458
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 19 VGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFP 62
VG P + +G PG G+PGP PP G PG GFP
Sbjct: 331 VGDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPLPLKGPPGDPGFP 375
Score = 31.2 bits (69), Expect = 1.3
Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 31 QGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ 90
+G PG G G Y PP PG G P P P P G G P +P Q
Sbjct: 992 KGTPGMQGRRGEPGRYGPPGFHRGEPGEKGQPGPPGPP-GPPGSTGLRGFIGFPGLPGDQ 1050
Query: 91 --PPLNCPPG 98
P PPG
Sbjct: 1051 GEPGSPGPPG 1060
Score = 30.8 bits (68), Expect = 1.7
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 22/87 (25%)
Query: 27 PTAFQGPPGYSGYPGP--------------QVSYPPPPAGHSGPGPAGFPVPNQPVYNQP 72
P +G G+ G PGP Q P P PG G P P
Sbjct: 808 PKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGP----- 862
Query: 73 VYNQPVGAAGVPWMPAPQPPLNCPPGL 99
P G G+P +P +P + PPGL
Sbjct: 863 --PGPAGMKGLPGLPG-RPGAHGPPGL 886
Score = 30.0 bits (66), Expect = 2.8
Identities = 30/87 (34%), Positives = 32/87 (36%), Gaps = 24/87 (27%)
Query: 18 PVGYP-PQYP--PTAFQGPPGYSGYPGPQVSYPPPPA----GHSGP-GPAGFPVPNQPVY 69
P G P PQ P P GP G SG G + PP A G GP G GFP
Sbjct: 66 PPGPPGPQGPIGPLGAPGPIGLSGEKGMRGDRGPPGAAGDKGDKGPTGVPGFP------- 118
Query: 70 NQPVYNQPVGAAGVPWMPAPQPPLNCP 96
G G+P P P P P
Sbjct: 119 ---------GLDGIPGHPGPPGPRGKP 136
Score = 29.3 bits (64), Expect = 4.8
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSY----PPPPAGHSGP-GPAGFPVPNQPVYNQPV- 73
G P + G PG G PG V Y P P G G GP G P N+ +
Sbjct: 433 GKPGKPGSPGLPGAPGLQGLPGSSVIYCSVGNPGPQGIKGKVGPPGGRGPKGEKGNEGLC 492
Query: 74 --YNQPVGAAGVPWMPAPQ 90
P+G G P +P Q
Sbjct: 493 ACEPGPMGPPGPPGLPGRQ 511
Score = 29.3 bits (64), Expect = 4.8
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 13 PETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGP----GPAGFP 62
P ++ P G P + +G PG G PGP+ P G GP GP+G P
Sbjct: 1123 PGSSGPPGCPGDHGMPGLRGQPGEMGDPGPRGLQGDP--GIPGPPGIKGPSGSP 1174
Score = 28.5 bits (62), Expect = 8.2
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 27 PTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAG 60
PT G PG G PG +P PP PG +G
Sbjct: 111 PTGVPGFPGLDGIPG----HPGPPGPRGKPGMSG 140
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 47.0 bits (110), Expect = 2e-05
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVG 79
G P Q GPPG G GPQ P PP PGP G P P P+ P P G
Sbjct: 673 GAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNPGPQGLPGPQGPI-GPPGEKGPQG 730
Query: 80 AAGVPWMPAPQPPLNCP 96
G+ +P P P
Sbjct: 731 KPGLAGLPGADGPPGHP 747
Score = 39.7 bits (91), Expect = 0.004
Identities = 32/75 (42%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQ 76
PVG P + GP G G PGPQ PP PAG G PG G P P V
Sbjct: 1067 PVGSPGERGSAGTAGPIGLPGRPGPQ--GPPGPAGEKGAPGEKG---PQGPAGRDGVQG- 1120
Query: 77 PVGAAGVPWMPAPQP 91
PVG G P PA P
Sbjct: 1121 PVGLPG-PAGPAGSP 1134
Score = 39.3 bits (90), Expect = 0.005
Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQ-VSYPPPPAGHSG-------PGPAGFPVPNQPVY 69
P G P GPPG G PGPQ + P P G G PG AG P + P
Sbjct: 686 PPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP- 744
Query: 70 NQPVYNQPVGAAGVPWMPAPQPPLNCP 96
P G G P PQ P+ P
Sbjct: 745 GHPGKEGQSGEKGALGPPGPQGPIGYP 771
Score = 39.3 bits (90), Expect = 0.005
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 6 SQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYP-PPPAGHSGP-GPAGFPV 63
S+ HP +G P + +G PG G PG + P PAG GP GP G P
Sbjct: 1460 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPG 1519
Query: 64 PNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
P P N+ P G G +P P P PPG
Sbjct: 1520 PQGPKGNKG-STGPAGQKGDSGLPGP-PGSPGPPG 1552
Score = 35.8 bits (81), Expect = 0.052
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 28/91 (30%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-------------------PGP 58
P G P + P QGP G G+PGP+ PP P G G PGP
Sbjct: 923 PPGPPGERGP---QGPQGPVGFPGPK--GPPGPPGKDGLPGHPGQRGETGFQGKTGPPGP 977
Query: 59 AGFPVPNQPVYNQPVYNQPVGAAGVPWMPAP 89
G P P P+G G P P P
Sbjct: 978 GGVVGPQGPTGE----TGPIGERGHPGPPGP 1004
Score = 35.8 bits (81), Expect = 0.052
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-------PGPAGFPVPNQPVYNQP 72
G+P + QG PG G GPQ PP P G G GP G +P +P P
Sbjct: 1039 GFPGERGLPGAQGAPGLKGGEGPQ--GPPGPVGSPGERGSAGTAGPIG--LPGRPGPQGP 1094
Query: 73 VYNQPVGAAGVPWMPAPQPP 92
P G G P PQ P
Sbjct: 1095 --PGPAGEKGAPGEKGPQGP 1112
Score = 33.9 bits (76), Expect = 0.20
Identities = 31/102 (30%), Positives = 37/102 (36%), Gaps = 20/102 (19%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQ----VSYPPPPAGHSGP----------GPAGFPVP- 64
GYP + P G PG+ G G + V+ P P G GP GP G P P
Sbjct: 856 GYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPK 915
Query: 65 ----NQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYL 102
P P G G P P+ P PPG + L
Sbjct: 916 GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG-PPGKDGL 956
Score = 33.5 bits (75), Expect = 0.26
Identities = 28/76 (36%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 27 PTAFQGPPGYSGYPGPQ-VSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQPVGAAGVP 84
P GPPG G PG P P G G PGP G P P Q G G P
Sbjct: 1298 PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP----AGQDGVGGDKGEDGDP 1353
Query: 85 WMPAPQPPLN--CPPG 98
P P P PPG
Sbjct: 1354 GQPGPPGPSGEAGPPG 1369
Score = 33.1 bits (74), Expect = 0.33
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQP 77
P G + P +G PG G PG Q + P G GP G P P P
Sbjct: 1025 PQGISGKDGPAGLRGFPGERGLPGAQGA----PGLKGGEGPQGPPGP----VGSPGERGS 1076
Query: 78 VGAA---GVPWMPAPQPP 92
G A G+P P PQ P
Sbjct: 1077 AGTAGPIGLPGRPGPQGP 1094
Score = 33.1 bits (74), Expect = 0.33
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 27 PTAFQGPPGYSGYPGPQ----------VSYPPPPAGHSGP-GPAGFPVPNQPVYNQPVYN 75
P +GPPG +G G Q PP G GP GPAG P P + + P
Sbjct: 1370 PPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP-EGLRGIP--- 1425
Query: 76 QPVGAAGVP---WMPAPQPPLNCPPGL 99
PVG G+P P P+ PPGL
Sbjct: 1426 GPVGEQGLPGAAGQDGPPGPMG-PPGL 1451
Score = 33.1 bits (74), Expect = 0.33
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 31 QGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ 90
+GPPG +G GPQ PAG PGP G PV Q + GAAG P P
Sbjct: 1398 EGPPGKTGPVGPQ-----GPAGK--PGPEGLRGIPGPVGEQGL----PGAAGQDGPPGPM 1446
Query: 91 PPLNCP 96
P P
Sbjct: 1447 GPPGLP 1452
Score = 32.7 bits (73), Expect = 0.44
Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQ- 76
P G P P G PG G PGP + P + G G G + Q Q + Q
Sbjct: 476 PPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQA 535
Query: 77 ------PVGAAGVPWMPAP 89
P G G+ P P
Sbjct: 536 RIALRGPPGPMGLTGRPGP 554
Score = 32.7 bits (73), Expect = 0.44
Identities = 25/71 (35%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGP-GPAGFPVPNQPVYNQPVYNQ 76
P G P + GPPG G GPQ GP GP GFP P P
Sbjct: 908 PTGKPGPKGTSGGDGPPGPPGERGPQ-----------GPQGPVGFPGPKGP-------PG 949
Query: 77 PVGAAGVPWMP 87
P G G+P P
Sbjct: 950 PPGKDGLPGHP 960
Score = 32.3 bits (72), Expect = 0.57
Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGPAGFPVPNQPVYNQPVYN 75
G P P GP G+ G PGP P PAG G G G P QP
Sbjct: 1309 GPPGDDGPKGNPGPVGFPGDPGPPGE--PGPAGQDGVGGDKGEDGDP-------GQPGPP 1359
Query: 76 QPVGAAGVPWMPAPQPP 92
P G AG P P + P
Sbjct: 1360 GPSGEAGPPGPPGKRGP 1376
Score = 31.6 bits (70), Expect = 0.97
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 16 NLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVY 74
N P G P P G G G PGP+ G G G GFP P P+ Q +
Sbjct: 1158 NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQ--QGMFGQKGDEGARGFPGPPGPIGLQGLP 1215
Query: 75 NQP--------VGAAGVPWMPAPQPP 92
P VG G P P P+ P
Sbjct: 1216 GPPGEKGENGDVGPMGPPGPPGPRGP 1241
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 40 PGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPA-PQPP 92
PG V PP PAG +G GP G P P P P G G+P P PP
Sbjct: 448 PGMLVEGPPGPAGPAGIMGPPGLQGPTGPP-GDPGDRGPPGRPGLPGADGLPGPP 501
Score = 30.0 bits (66), Expect = 2.8
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFP 62
G P P GPPG G GP P P PG G P
Sbjct: 454 GPPGPAGPAGIMGPPGLQGPTGP----PGDPGDRGPPGRPGLP 492
Score = 29.6 bits (65), Expect = 3.7
Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 25/87 (28%)
Query: 20 GYPPQYPPTAFQGPPGYS------GYPGPQ-VSYPPPPAGHSG-PGPAGFPVPNQPVYNQ 71
G+P P QG PG + G PGPQ +S PAG G PG G P
Sbjct: 997 GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLP--------- 1047
Query: 72 PVYNQPVGAAGVPWMPAPQPPLNCPPG 98
GA G P + + P PPG
Sbjct: 1048 -------GAQGAPGLKGGEGPQG-PPG 1066
Score = 29.6 bits (65), Expect = 3.7
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 13 PETNLPVGYPPQYPPTAFQGPPGYSGYPGP--------QVSYPPPPAGHSGPGPAGFPVP 64
P + P G P P F G PG G PGP P PGP+G P
Sbjct: 1311 PGDDGPKGNPG---PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP 1367
Query: 65 NQPVYNQPVYNQPVGAAG 82
P P P GAAG
Sbjct: 1368 PGP----PGKRGPPGAAG 1381
Score = 29.3 bits (64), Expect = 4.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAG 60
G P P QGPPG +G PG + P G PG G
Sbjct: 568 GDPGPQGPRGVQGPPGPTGKPGKR-GRPGADGGRGMPGEPG 607
Score = 28.9 bits (63), Expect = 6.3
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSY----------PPPPAGHSG-PGPAGFPVPNQ 66
P+G P P QGP G G GP S P AG+ G PG AG P +
Sbjct: 1229 PMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGP-K 1287
Query: 67 PVYNQPVYNQPVGAAGVPWMPAP 89
+ P GAAG P P
Sbjct: 1288 GERGEKGEAGPPGAAGPPGAKGP 1310
Score = 28.9 bits (63), Expect = 6.3
Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYP-PPPAGHSGP----GPAGFP 62
PVG PQ P GP G G PGP P AG GP GP G P
Sbjct: 1406 PVG--PQ-GPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP 1452
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 47.0 bits (110), Expect = 2e-05
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVG 79
G P Q GPPG G GPQ P PP PGP G P P P+ P P G
Sbjct: 622 GAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNPGPQGLPGPQGPI-GPPGEKGPQG 679
Query: 80 AAGVPWMPAPQPPLNCP 96
G+ +P P P
Sbjct: 680 KPGLAGLPGADGPPGHP 696
Score = 39.7 bits (91), Expect = 0.004
Identities = 32/75 (42%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQ 76
PVG P + GP G G PGPQ PP PAG G PG G P P V
Sbjct: 1016 PVGSPGERGSAGTAGPIGLPGRPGPQ--GPPGPAGEKGAPGEKG---PQGPAGRDGVQG- 1069
Query: 77 PVGAAGVPWMPAPQP 91
PVG G P PA P
Sbjct: 1070 PVGLPG-PAGPAGSP 1083
Score = 39.3 bits (90), Expect = 0.005
Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQ-VSYPPPPAGHSG-------PGPAGFPVPNQPVY 69
P G P GPPG G PGPQ + P P G G PG AG P + P
Sbjct: 635 PPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP- 693
Query: 70 NQPVYNQPVGAAGVPWMPAPQPPLNCP 96
P G G P PQ P+ P
Sbjct: 694 GHPGKEGQSGEKGALGPPGPQGPIGYP 720
Score = 39.3 bits (90), Expect = 0.005
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 6 SQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYP-PPPAGHSGP-GPAGFPV 63
S+ HP +G P + +G PG G PG + P PAG GP GP G P
Sbjct: 1409 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPG 1468
Query: 64 PNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
P P N+ P G G +P P P PPG
Sbjct: 1469 PQGPKGNKG-STGPAGQKGDSGLPGP-PGSPGPPG 1501
Score = 35.8 bits (81), Expect = 0.052
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 28/91 (30%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-------------------PGP 58
P G P + P QGP G G+PGP+ PP P G G PGP
Sbjct: 872 PPGPPGERGP---QGPQGPVGFPGPK--GPPGPPGKDGLPGHPGQRGETGFQGKTGPPGP 926
Query: 59 AGFPVPNQPVYNQPVYNQPVGAAGVPWMPAP 89
G P P P+G G P P P
Sbjct: 927 GGVVGPQGPTGE----TGPIGERGHPGPPGP 953
Score = 35.8 bits (81), Expect = 0.052
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-------PGPAGFPVPNQPVYNQP 72
G+P + QG PG G GPQ PP P G G GP G +P +P P
Sbjct: 988 GFPGERGLPGAQGAPGLKGGEGPQ--GPPGPVGSPGERGSAGTAGPIG--LPGRPGPQGP 1043
Query: 73 VYNQPVGAAGVPWMPAPQPP 92
P G G P PQ P
Sbjct: 1044 --PGPAGEKGAPGEKGPQGP 1061
Score = 33.9 bits (76), Expect = 0.20
Identities = 31/102 (30%), Positives = 37/102 (36%), Gaps = 20/102 (19%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQ----VSYPPPPAGHSGP----------GPAGFPVP- 64
GYP + P G PG+ G G + V+ P P G GP GP G P P
Sbjct: 805 GYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPK 864
Query: 65 ----NQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYL 102
P P G G P P+ P PPG + L
Sbjct: 865 GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG-PPGKDGL 905
Score = 33.5 bits (75), Expect = 0.26
Identities = 28/76 (36%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 27 PTAFQGPPGYSGYPGPQ-VSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQPVGAAGVP 84
P GPPG G PG P P G G PGP G P P Q G G P
Sbjct: 1247 PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP----AGQDGVGGDKGEDGDP 1302
Query: 85 WMPAPQPPLN--CPPG 98
P P P PPG
Sbjct: 1303 GQPGPPGPSGEAGPPG 1318
Score = 33.1 bits (74), Expect = 0.33
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQP 77
P G + P +G PG G PG Q + P G GP G P P P
Sbjct: 974 PQGISGKDGPAGLRGFPGERGLPGAQGA----PGLKGGEGPQGPPGP----VGSPGERGS 1025
Query: 78 VGAA---GVPWMPAPQPP 92
G A G+P P PQ P
Sbjct: 1026 AGTAGPIGLPGRPGPQGP 1043
Score = 33.1 bits (74), Expect = 0.33
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 27 PTAFQGPPGYSGYPGPQ----------VSYPPPPAGHSGP-GPAGFPVPNQPVYNQPVYN 75
P +GPPG +G G Q PP G GP GPAG P P + + P
Sbjct: 1319 PPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP-EGLRGIP--- 1374
Query: 76 QPVGAAGVP---WMPAPQPPLNCPPGL 99
PVG G+P P P+ PPGL
Sbjct: 1375 GPVGEQGLPGAAGQDGPPGPMG-PPGL 1400
Score = 33.1 bits (74), Expect = 0.33
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 31 QGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ 90
+GPPG +G GPQ PAG PGP G PV Q + GAAG P P
Sbjct: 1347 EGPPGKTGPVGPQ-----GPAGK--PGPEGLRGIPGPVGEQGL----PGAAGQDGPPGPM 1395
Query: 91 PPLNCP 96
P P
Sbjct: 1396 GPPGLP 1401
Score = 32.7 bits (73), Expect = 0.44
Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQ- 76
P G P P G PG G PGP + P + G G G + Q Q + Q
Sbjct: 425 PPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQA 484
Query: 77 ------PVGAAGVPWMPAP 89
P G G+ P P
Sbjct: 485 RIALRGPPGPMGLTGRPGP 503
Score = 32.7 bits (73), Expect = 0.44
Identities = 25/71 (35%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGP-GPAGFPVPNQPVYNQPVYNQ 76
P G P + GPPG G GPQ GP GP GFP P P
Sbjct: 857 PTGKPGPKGTSGGDGPPGPPGERGPQ-----------GPQGPVGFPGPKGP-------PG 898
Query: 77 PVGAAGVPWMP 87
P G G+P P
Sbjct: 899 PPGKDGLPGHP 909
Score = 32.3 bits (72), Expect = 0.57
Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGPAGFPVPNQPVYNQPVYN 75
G P P GP G+ G PGP P PAG G G G P QP
Sbjct: 1258 GPPGDDGPKGNPGPVGFPGDPGPPGE--PGPAGQDGVGGDKGEDGDP-------GQPGPP 1308
Query: 76 QPVGAAGVPWMPAPQPP 92
P G AG P P + P
Sbjct: 1309 GPSGEAGPPGPPGKRGP 1325
Score = 31.6 bits (70), Expect = 0.97
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 16 NLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVY 74
N P G P P G G G PGP+ G G G GFP P P+ Q +
Sbjct: 1107 NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQ--QGMFGQKGDEGARGFPGPPGPIGLQGLP 1164
Query: 75 NQP--------VGAAGVPWMPAPQPP 92
P VG G P P P+ P
Sbjct: 1165 GPPGEKGENGDVGPMGPPGPPGPRGP 1190
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 40 PGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPA-PQPP 92
PG V PP PAG +G GP G P P P P G G+P P PP
Sbjct: 397 PGMLVEGPPGPAGPAGIMGPPGLQGPTGPP-GDPGDRGPPGRPGLPGADGLPGPP 450
Score = 30.0 bits (66), Expect = 2.8
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFP 62
G P P GPPG G GP P P PG G P
Sbjct: 403 GPPGPAGPAGIMGPPGLQGPTGP----PGDPGDRGPPGRPGLP 441
Score = 29.6 bits (65), Expect = 3.7
Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 25/87 (28%)
Query: 20 GYPPQYPPTAFQGPPGYS------GYPGPQ-VSYPPPPAGHSG-PGPAGFPVPNQPVYNQ 71
G+P P QG PG + G PGPQ +S PAG G PG G P
Sbjct: 946 GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLP--------- 996
Query: 72 PVYNQPVGAAGVPWMPAPQPPLNCPPG 98
GA G P + + P PPG
Sbjct: 997 -------GAQGAPGLKGGEGPQG-PPG 1015
Score = 29.6 bits (65), Expect = 3.7
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 13 PETNLPVGYPPQYPPTAFQGPPGYSGYPGP--------QVSYPPPPAGHSGPGPAGFPVP 64
P + P G P P F G PG G PGP P PGP+G P
Sbjct: 1260 PGDDGPKGNPG---PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP 1316
Query: 65 NQPVYNQPVYNQPVGAAG 82
P P P GAAG
Sbjct: 1317 PGP----PGKRGPPGAAG 1330
Score = 29.3 bits (64), Expect = 4.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAG 60
G P P QGPPG +G PG + P G PG G
Sbjct: 517 GDPGPQGPRGVQGPPGPTGKPGKR-GRPGADGGRGMPGEPG 556
Score = 28.9 bits (63), Expect = 6.3
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSY----------PPPPAGHSG-PGPAGFPVPNQ 66
P+G P P QGP G G GP S P AG+ G PG AG P +
Sbjct: 1178 PMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGP-K 1236
Query: 67 PVYNQPVYNQPVGAAGVPWMPAP 89
+ P GAAG P P
Sbjct: 1237 GERGEKGEAGPPGAAGPPGAKGP 1259
Score = 28.9 bits (63), Expect = 6.3
Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYP-PPPAGHSGP----GPAGFP 62
PVG PQ P GP G G PGP P AG GP GP G P
Sbjct: 1355 PVG--PQ-GPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP 1401
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 47.0 bits (110), Expect = 2e-05
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVG 79
G P Q GPPG G GPQ P PP PGP G P P P+ P P G
Sbjct: 661 GAPGQPGMAGVDGPPGPKGNMGPQ-GEPGPPGQQGNPGPQGLPGPQGPI-GPPGEKGPQG 718
Query: 80 AAGVPWMPAPQPPLNCP 96
G+ +P P P
Sbjct: 719 KPGLAGLPGADGPPGHP 735
Score = 39.7 bits (91), Expect = 0.004
Identities = 32/75 (42%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQ 76
PVG P + GP G G PGPQ PP PAG G PG G P P V
Sbjct: 1055 PVGSPGERGSAGTAGPIGLPGRPGPQ--GPPGPAGEKGAPGEKG---PQGPAGRDGVQG- 1108
Query: 77 PVGAAGVPWMPAPQP 91
PVG G P PA P
Sbjct: 1109 PVGLPG-PAGPAGSP 1122
Score = 39.3 bits (90), Expect = 0.005
Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQ-VSYPPPPAGHSG-------PGPAGFPVPNQPVY 69
P G P GPPG G PGPQ + P P G G PG AG P + P
Sbjct: 674 PPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPP- 732
Query: 70 NQPVYNQPVGAAGVPWMPAPQPPLNCP 96
P G G P PQ P+ P
Sbjct: 733 GHPGKEGQSGEKGALGPPGPQGPIGYP 759
Score = 39.3 bits (90), Expect = 0.005
Identities = 33/95 (34%), Positives = 40/95 (42%), Gaps = 4/95 (4%)
Query: 6 SQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYP-PPPAGHSGP-GPAGFPV 63
S+ HP +G P + +G PG G PG + P PAG GP GP G P
Sbjct: 1448 SKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPG 1507
Query: 64 PNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
P P N+ P G G +P P P PPG
Sbjct: 1508 PQGPKGNKG-STGPAGQKGDSGLPGP-PGSPGPPG 1540
Score = 35.8 bits (81), Expect = 0.052
Identities = 29/91 (31%), Positives = 33/91 (36%), Gaps = 28/91 (30%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-------------------PGP 58
P G P + P QGP G G+PGP+ PP P G G PGP
Sbjct: 911 PPGPPGERGP---QGPQGPVGFPGPK--GPPGPPGKDGLPGHPGQRGETGFQGKTGPPGP 965
Query: 59 AGFPVPNQPVYNQPVYNQPVGAAGVPWMPAP 89
G P P P+G G P P P
Sbjct: 966 GGVVGPQGPTGE----TGPIGERGHPGPPGP 992
Score = 35.8 bits (81), Expect = 0.052
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 13/80 (16%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-------PGPAGFPVPNQPVYNQP 72
G+P + QG PG G GPQ PP P G G GP G +P +P P
Sbjct: 1027 GFPGERGLPGAQGAPGLKGGEGPQ--GPPGPVGSPGERGSAGTAGPIG--LPGRPGPQGP 1082
Query: 73 VYNQPVGAAGVPWMPAPQPP 92
P G G P PQ P
Sbjct: 1083 --PGPAGEKGAPGEKGPQGP 1100
Score = 33.9 bits (76), Expect = 0.20
Identities = 31/102 (30%), Positives = 37/102 (36%), Gaps = 20/102 (19%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQ----VSYPPPPAGHSGP----------GPAGFPVP- 64
GYP + P G PG+ G G + V+ P P G GP GP G P P
Sbjct: 844 GYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPK 903
Query: 65 ----NQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYL 102
P P G G P P+ P PPG + L
Sbjct: 904 GTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPG-PPGKDGL 944
Score = 33.5 bits (75), Expect = 0.26
Identities = 28/76 (36%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 27 PTAFQGPPGYSGYPGPQ-VSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQPVGAAGVP 84
P GPPG G PG P P G G PGP G P P Q G G P
Sbjct: 1286 PPGAAGPPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEPGP----AGQDGVGGDKGEDGDP 1341
Query: 85 WMPAPQPPLN--CPPG 98
P P P PPG
Sbjct: 1342 GQPGPPGPSGEAGPPG 1357
Score = 33.1 bits (74), Expect = 0.33
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 11/78 (14%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQP 77
P G + P +G PG G PG Q + P G GP G P P P
Sbjct: 1013 PQGISGKDGPAGLRGFPGERGLPGAQGA----PGLKGGEGPQGPPGP----VGSPGERGS 1064
Query: 78 VGAA---GVPWMPAPQPP 92
G A G+P P PQ P
Sbjct: 1065 AGTAGPIGLPGRPGPQGP 1082
Score = 33.1 bits (74), Expect = 0.33
Identities = 31/87 (35%), Positives = 37/87 (42%), Gaps = 19/87 (21%)
Query: 27 PTAFQGPPGYSGYPGPQ----------VSYPPPPAGHSGP-GPAGFPVPNQPVYNQPVYN 75
P +GPPG +G G Q PP G GP GPAG P P + + P
Sbjct: 1358 PPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP-EGLRGIP--- 1413
Query: 76 QPVGAAGVP---WMPAPQPPLNCPPGL 99
PVG G+P P P+ PPGL
Sbjct: 1414 GPVGEQGLPGAAGQDGPPGPMG-PPGL 1439
Score = 33.1 bits (74), Expect = 0.33
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 31 QGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ 90
+GPPG +G GPQ PAG PGP G PV Q + GAAG P P
Sbjct: 1386 EGPPGKTGPVGPQ-----GPAGK--PGPEGLRGIPGPVGEQGL----PGAAGQDGPPGPM 1434
Query: 91 PPLNCP 96
P P
Sbjct: 1435 GPPGLP 1440
Score = 32.7 bits (73), Expect = 0.44
Identities = 23/79 (29%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQ- 76
P G P P G PG G PGP + P + G G G + Q Q + Q
Sbjct: 464 PPGDPGDRGPPGRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQA 523
Query: 77 ------PVGAAGVPWMPAP 89
P G G+ P P
Sbjct: 524 RIALRGPPGPMGLTGRPGP 542
Score = 32.7 bits (73), Expect = 0.44
Identities = 25/71 (35%), Positives = 27/71 (38%), Gaps = 19/71 (26%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGP-GPAGFPVPNQPVYNQPVYNQ 76
P G P + GPPG G GPQ GP GP GFP P P
Sbjct: 896 PTGKPGPKGTSGGDGPPGPPGERGPQ-----------GPQGPVGFPGPKGP-------PG 937
Query: 77 PVGAAGVPWMP 87
P G G+P P
Sbjct: 938 PPGKDGLPGHP 948
Score = 32.3 bits (72), Expect = 0.57
Identities = 27/77 (35%), Positives = 29/77 (37%), Gaps = 13/77 (16%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGPAGFPVPNQPVYNQPVYN 75
G P P GP G+ G PGP P PAG G G G P QP
Sbjct: 1297 GPPGDDGPKGNPGPVGFPGDPGPPGE--PGPAGQDGVGGDKGEDGDP-------GQPGPP 1347
Query: 76 QPVGAAGVPWMPAPQPP 92
P G AG P P + P
Sbjct: 1348 GPSGEAGPPGPPGKRGP 1364
Score = 31.6 bits (70), Expect = 0.97
Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 16 NLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVY 74
N P G P P G G G PGP+ G G G GFP P P+ Q +
Sbjct: 1146 NGPPGPPGLQGPVGAPGIAGGDGEPGPRGQ--QGMFGQKGDEGARGFPGPPGPIGLQGLP 1203
Query: 75 NQP--------VGAAGVPWMPAPQPP 92
P VG G P P P+ P
Sbjct: 1204 GPPGEKGENGDVGPMGPPGPPGPRGP 1229
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/55 (40%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 40 PGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPA-PQPP 92
PG V PP PAG +G GP G P P P P G G+P P PP
Sbjct: 436 PGMLVEGPPGPAGPAGIMGPPGLQGPTGPP-GDPGDRGPPGRPGLPGADGLPGPP 489
Score = 30.0 bits (66), Expect = 2.8
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFP 62
G P P GPPG G GP P P PG G P
Sbjct: 442 GPPGPAGPAGIMGPPGLQGPTGP----PGDPGDRGPPGRPGLP 480
Score = 29.6 bits (65), Expect = 3.7
Identities = 29/87 (33%), Positives = 34/87 (39%), Gaps = 25/87 (28%)
Query: 20 GYPPQYPPTAFQGPPGYS------GYPGPQ-VSYPPPPAGHSG-PGPAGFPVPNQPVYNQ 71
G+P P QG PG + G PGPQ +S PAG G PG G P
Sbjct: 985 GHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLP--------- 1035
Query: 72 PVYNQPVGAAGVPWMPAPQPPLNCPPG 98
GA G P + + P PPG
Sbjct: 1036 -------GAQGAPGLKGGEGPQG-PPG 1054
Score = 29.6 bits (65), Expect = 3.7
Identities = 26/78 (33%), Positives = 28/78 (35%), Gaps = 15/78 (19%)
Query: 13 PETNLPVGYPPQYPPTAFQGPPGYSGYPGP--------QVSYPPPPAGHSGPGPAGFPVP 64
P + P G P P F G PG G PGP P PGP+G P
Sbjct: 1299 PGDDGPKGNPG---PVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGP 1355
Query: 65 NQPVYNQPVYNQPVGAAG 82
P P P GAAG
Sbjct: 1356 PGP----PGKRGPPGAAG 1369
Score = 29.3 bits (64), Expect = 4.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAG 60
G P P QGPPG +G PG + P G PG G
Sbjct: 556 GDPGPQGPRGVQGPPGPTGKPGKR-GRPGADGGRGMPGEPG 595
Score = 28.9 bits (63), Expect = 6.3
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 12/83 (14%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSY----------PPPPAGHSG-PGPAGFPVPNQ 66
P+G P P QGP G G GP S P AG+ G PG AG P +
Sbjct: 1217 PMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGP-K 1275
Query: 67 PVYNQPVYNQPVGAAGVPWMPAP 89
+ P GAAG P P
Sbjct: 1276 GERGEKGEAGPPGAAGPPGAKGP 1298
Score = 28.9 bits (63), Expect = 6.3
Identities = 22/50 (44%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYP-PPPAGHSGP----GPAGFP 62
PVG PQ P GP G G PGP P AG GP GP G P
Sbjct: 1394 PVG--PQ-GPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLP 1440
>gi|115430223 galectin 3 [Homo sapiens]
Length = 250
Score = 46.6 bits (109), Expect = 3e-05
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 12 HPETNLPVGYPPQYPPTAF--QGPPGYSGYPGPQVSYP--PPPAGHSGP--GPAGFPVPN 65
+P + P YP Q PP A+ Q PPG YPG +YP P P + GP GP +P
Sbjct: 36 YPGASYPGAYPGQAPPGAYPGQAPPG--AYPGAPGAYPGAPAPGVYPGPPSGPGAYPSSG 93
Query: 66 QPVYNQPV-----YNQPVGAAGVPW-MPAP 89
QP Y P G VP+ +P P
Sbjct: 94 QPSATGAYPATGPYGAPAGPLIVPYNLPLP 123
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 46.6 bits (109), Expect = 3e-05
Identities = 33/90 (36%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPP----PAGHSG-PGPAGFPVPNQP----V 68
P G P QGPPG G GP PP P G G PGP GFP +P +
Sbjct: 481 PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGL 540
Query: 69 YNQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
+ P +G G P +P P P PPG
Sbjct: 541 HGPPGKPGALGPQGQPGLPGPPGPPG-PPG 569
Score = 39.3 bits (90), Expect = 0.005
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 22/101 (21%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGP-------------GPAGFPVP 64
P+G P P G PG GP + P P G GP G GF +P
Sbjct: 189 PMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMP 248
Query: 65 NQP-VYNQPVYNQPVGAAGVPWM--------PAPQPPLNCP 96
P V P + P G G+P + P PQ PL P
Sbjct: 249 GAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKP 289
Score = 38.9 bits (89), Expect = 0.006
Identities = 34/90 (37%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPA-GHSGP-GPAGFP----VPNQPVYNQ 71
PVG P G PG +G+PGPQ P A G GP GP G P P P +
Sbjct: 265 PVGLPGV-------GKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGK 317
Query: 72 PVYNQPVGAAGVPWMPAPQ--PPLNCPPGL 99
P + G G P Q P L PPGL
Sbjct: 318 PGQDGIPGQPGFPGGKGEQGLPGLPGPPGL 347
Score = 37.4 bits (85), Expect = 0.018
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 19 VGYPPQYPPTAF----QGPPGYSGYPGPQ-----VSYPPPPAGHSGPGPAGFPVPNQPVY 69
+G PP P GPPG G+PGP+ V PP PG GFP
Sbjct: 385 IGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFP------- 437
Query: 70 NQPVYNQPVGAAGVPWMPAPQPP 92
+P + VG G+ +P P P
Sbjct: 438 GKPGFLGEVGPPGMRGLPGPIGP 460
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 18 PVGYP-PQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFP-VPNQP-VYNQPVY 74
P G P P+ PP GPPG G+ P + P P G+ G G G P +P +P P
Sbjct: 122 PRGEPGPRGPP----GPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGA 177
Query: 75 NQPV---GAAGVPWMPAPQPP 92
+ G G +P PQ P
Sbjct: 178 KGEIGQKGEIGPMGIPGPQGP 198
Score = 34.7 bits (78), Expect = 0.11
Identities = 31/96 (32%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 12 HPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYP--PPPAGH----SGPGPAGFPVPN 65
H P PQ P GPPG G PGP P PPP G G G G P+
Sbjct: 541 HGPPGKPGALGPQGQP-GLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPH 599
Query: 66 -----QPVYNQPVYNQPVGAAGVPWMPAPQPPLNCP 96
+ P Y P A + AP PP+ P
Sbjct: 600 AYGAKKGKNGGPAYEMPAFTAE---LTAPFPPVGAP 632
Score = 32.3 bits (72), Expect = 0.57
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 24 QYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG---------PGPAGFPVPNQPVYNQPVY 74
+ P + +G G G PGP+ PP P G G PGP G+P +P P
Sbjct: 110 EIPLASLRGEQGPRGEPGPR--GPPGPPGLPGHGIPGIKGKPGPQGYPGVGKP--GMPGM 165
Query: 75 NQPVGAAGVP 84
GA G+P
Sbjct: 166 PGKPGAMGMP 175
Score = 31.6 bits (70), Expect = 0.97
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGPAGFPVPNQPVYNQPVYN 75
G+P G PG G PG P P G G PG G P + P
Sbjct: 328 GFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALG-PRGEKGPIGAPGIG 386
Query: 76 QPVGAAGVPWMPAPQPP 92
P G G+P +P P P
Sbjct: 387 GPPGEPGLPGIPGPMGP 403
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 46.6 bits (109), Expect = 3e-05
Identities = 33/90 (36%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPP----PAGHSG-PGPAGFPVPNQP----V 68
P G P QGPPG G GP PP P G G PGP GFP +P +
Sbjct: 481 PKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGL 540
Query: 69 YNQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
+ P +G G P +P P P PPG
Sbjct: 541 HGPPGKPGALGPQGQPGLPGPPGPPG-PPG 569
Score = 39.3 bits (90), Expect = 0.005
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 22/101 (21%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGP-------------GPAGFPVP 64
P+G P P G PG GP + P P G GP G GF +P
Sbjct: 189 PMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGFGMP 248
Query: 65 NQP-VYNQPVYNQPVGAAGVPWM--------PAPQPPLNCP 96
P V P + P G G+P + P PQ PL P
Sbjct: 249 GAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKP 289
Score = 38.9 bits (89), Expect = 0.006
Identities = 34/90 (37%), Positives = 38/90 (42%), Gaps = 15/90 (16%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPA-GHSGP-GPAGFP----VPNQPVYNQ 71
PVG P G PG +G+PGPQ P A G GP GP G P P P +
Sbjct: 265 PVGLPGV-------GKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGK 317
Query: 72 PVYNQPVGAAGVPWMPAPQ--PPLNCPPGL 99
P + G G P Q P L PPGL
Sbjct: 318 PGQDGIPGQPGFPGGKGEQGLPGLPGPPGL 347
Score = 37.4 bits (85), Expect = 0.018
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 16/83 (19%)
Query: 19 VGYPPQYPPTAF----QGPPGYSGYPGPQ-----VSYPPPPAGHSGPGPAGFPVPNQPVY 69
+G PP P GPPG G+PGP+ V PP PG GFP
Sbjct: 385 IGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFP------- 437
Query: 70 NQPVYNQPVGAAGVPWMPAPQPP 92
+P + VG G+ +P P P
Sbjct: 438 GKPGFLGEVGPPGMRGLPGPIGP 460
Score = 37.0 bits (84), Expect = 0.023
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 18 PVGYP-PQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFP-VPNQP-VYNQPVY 74
P G P P+ PP GPPG G+ P + P P G+ G G G P +P +P P
Sbjct: 122 PRGEPGPRGPP----GPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGA 177
Query: 75 NQPV---GAAGVPWMPAPQPP 92
+ G G +P PQ P
Sbjct: 178 KGEIGQKGEIGPMGIPGPQGP 198
Score = 34.7 bits (78), Expect = 0.11
Identities = 31/96 (32%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 12 HPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYP--PPPAGH----SGPGPAGFPVPN 65
H P PQ P GPPG G PGP P PPP G G G G P+
Sbjct: 541 HGPPGKPGALGPQGQP-GLPGPPGPPGPPGPPAVMPPTPPPQGEYLPDMGLGIDGVKPPH 599
Query: 66 -----QPVYNQPVYNQPVGAAGVPWMPAPQPPLNCP 96
+ P Y P A + AP PP+ P
Sbjct: 600 AYGAKKGKNGGPAYEMPAFTAE---LTAPFPPVGAP 632
Score = 32.3 bits (72), Expect = 0.57
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 24 QYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG---------PGPAGFPVPNQPVYNQPVY 74
+ P + +G G G PGP+ PP P G G PGP G+P +P P
Sbjct: 110 EIPLASLRGEQGPRGEPGPR--GPPGPPGLPGHGIPGIKGKPGPQGYPGVGKP--GMPGM 165
Query: 75 NQPVGAAGVP 84
GA G+P
Sbjct: 166 PGKPGAMGMP 175
Score = 31.6 bits (70), Expect = 0.97
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGPAGFPVPNQPVYNQPVYN 75
G+P G PG G PG P P G G PG G P + P
Sbjct: 328 GFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALG-PRGEKGPIGAPGIG 386
Query: 76 QPVGAAGVPWMPAPQPP 92
P G G+P +P P P
Sbjct: 387 GPPGEPGLPGIPGPMGP 403
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 46.2 bits (108), Expect = 4e-05
Identities = 36/104 (34%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 11 SHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGP------GPAGFPVP 64
S P +P+G P P PPG G P P PPP G SGP G G P+P
Sbjct: 339 SGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPP----PPPATGRSGPLPPPPPGAGGPPMP 394
Query: 65 NQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYLSQIDQI 108
P P + G A P PA P PG + +DQI
Sbjct: 395 PPPPPPPPPPSSGNGPAPPPLPPALVPAGGLAPGGGRGALLDQI 438
Score = 38.1 bits (87), Expect = 0.010
Identities = 31/93 (33%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 17 LPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGP----------AGFPVPNQ 66
LP PP PP G G PP P G + P P G P P
Sbjct: 313 LPPPPPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPPPPGRGGPPPPPP 372
Query: 67 PVYNQ--PVYNQPVGAAGVPWMPAPQPPLNCPP 97
P + P+ P GA G P MP P PP PP
Sbjct: 373 PATGRSGPLPPPPPGAGGPP-MPPPPPPPPPPP 404
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 46.2 bits (108), Expect = 4e-05
Identities = 30/81 (37%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGP--QVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYN 75
P+G PP P QGPPG G PGP Q P PGP G VP P
Sbjct: 809 PMG-PPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER----- 862
Query: 76 QPVGAAGVPWMPAPQPPLNCP 96
G+ G+P P P P P
Sbjct: 863 ---GSPGIPGAPGPIGPPGSP 880
Score = 45.8 bits (107), Expect = 5e-05
Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 31 QGPPGYSGYPGPQVSYPPPPAGHSG-------PGPAGFPVPNQPVYNQPVYNQPVGAAGV 83
QGPPG G PG V PP P G G GP G +P P + QP GA G+
Sbjct: 379 QGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLD----GQP-GAPGL 433
Query: 84 PWMPAPQPPLNCPPGLE 100
P P P P + PP E
Sbjct: 434 PGPPGPAGP-HIPPSDE 449
Score = 40.8 bits (94), Expect = 0.002
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQP 77
P G P P QG PG +G PGP + P PP PGP G P P + + P
Sbjct: 169 PKGNPGYPGPPGIQGLPGPTGIPGP-IGPPGPPGLMGPPGPPGLPGPKGNMGLN--FQGP 225
Query: 78 VGAAGVPWMPAPQPP 92
G G + P P
Sbjct: 226 KGEKGEQGLQGPPGP 240
Score = 40.0 bits (92), Expect = 0.003
Identities = 31/107 (28%), Positives = 37/107 (34%), Gaps = 27/107 (25%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFP----------VPNQPVY 69
G P P +GPPG G+PG P P PGP G P P P +
Sbjct: 81 GIPGPPGPKGIRGPPGLPGFPGTP-GLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGF 139
Query: 70 NQPVYNQPVGAAGVPWM--------------PAPQPPLNCPPGLEYL 102
P P G G+P M P P PPG++ L
Sbjct: 140 --PGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGL 184
Score = 39.7 bits (91), Expect = 0.004
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGP--QVSYPPPPAGHSGPGPAGFP-------------VP 64
G+P Q P +G PG G PGP Q P P G PGP G P +P
Sbjct: 1155 GHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQP-GFGNPGPPGLPGLSGQKGDGGLPGIP 1213
Query: 65 NQP----VYNQPVYNQPVGAAGVPWMP-APQPPLNCPPG 98
P +P ++ G G P P +P P L P G
Sbjct: 1214 GNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKG 1252
Score = 39.3 bits (90), Expect = 0.005
Identities = 34/95 (35%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYP---PPPAGHSG-PGPAGF---PVPNQP--- 67
P G P + QGPPG G PGP + P P P G G PGP GF P P P
Sbjct: 1221 PKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPPGL 1280
Query: 68 VYNQPVYNQP--VGAAGVPWMPAPQPPLNCPPGLE 100
N + + G G+P +P + PPGL+
Sbjct: 1281 PGNGGIKGEKGNPGQPGLPGLPGLKGDQG-PPGLQ 1314
Score = 38.9 bits (89), Expect = 0.006
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 11 SHPETNLP-VGYPPQYPPTAFQGPPGYSGYPGPQ----VSYPPPPAGHSGP-GPAGFPVP 64
S E +P +G P P F G PG G PG + PP P G GP G GF +P
Sbjct: 697 SKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALP 756
Query: 65 NQP-VYNQPVYNQPVGAAGVPWMPAPQPP 92
P P + +G G P P P
Sbjct: 757 GPPGPPGLPGFKGALGPKGDRGFPGPPGP 785
Score = 38.1 bits (87), Expect = 0.010
Identities = 34/99 (34%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGPAGFP------------- 62
G P PT +G G G PGP P G G PG G P
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPG 988
Query: 63 VPNQP-VYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLE 100
P QP + QP P G G P +P QP L PPGL+
Sbjct: 989 DPGQPGLSGQPGLPGPPGPKGNPGLPG-QPGLIGPPGLK 1026
Score = 37.4 bits (85), Expect = 0.018
Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 35/103 (33%)
Query: 22 PPQYPPT----AFQGPPGYSGYPGPQ------VSYPPPPAGHSG-------PGPAGFPVP 64
PP P T +GPPG G+PGP+ + PP P G G G GFP P
Sbjct: 723 PPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGP 782
Query: 65 NQPVYNQPVYNQPVGAAGVPWMPAP--------QPPLNCPPGL 99
P G G+ +P P QP PPGL
Sbjct: 783 ----------PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL 815
Score = 36.6 bits (83), Expect = 0.030
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQ-VSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPV 78
G P P +G G G+PGPQ V PP P+G PG G P P + +
Sbjct: 1015 GQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSG--VPGQPG--SPGLPGQKGDKGDPGI 1070
Query: 79 GAAGVPWMPAP--QPPLNCPPG 98
+ G+P +P P +P L PG
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPG 1092
Score = 36.2 bits (82), Expect = 0.040
Identities = 30/84 (35%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVG 79
G P P GPPG G PG P P G PG G P + Q P G
Sbjct: 1125 GTPGPPGPKGISGPPGNPGLPGE----PGPVGGGGHPGQPG-PPGEKGKPGQDGIPGPAG 1179
Query: 80 AAGVPWMPAPQPPLNCPPGLEYLS 103
G P P P PPGL LS
Sbjct: 1180 QKGEPGQPGFGNP--GPPGLPGLS 1201
Score = 35.0 bits (79), Expect = 0.088
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 26/93 (27%)
Query: 31 QGPPGYSGYPGPQ-------------VSYPPPPAGHSG-PGPAGFP----VPNQPVYNQ- 71
+G PG G+PGP+ + PP P G G PG GFP +P P ++
Sbjct: 56 EGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGA 115
Query: 72 ------PVYNQPVGAAGVPWMPAPQPPLNCPPG 98
P N G G P P P L PPG
Sbjct: 116 PGPQGIPGCNGTKGERGFPGSPG-FPGLQGPPG 147
Score = 35.0 bits (79), Expect = 0.088
Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQP- 77
G P Q G G G PG + PP P G G PGP G P + + P
Sbjct: 684 GLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPG 743
Query: 78 -VGAAGVPWMPAPQPPLNCPPGL 99
G G P P PP PPGL
Sbjct: 744 FPGPKGEPGFALPGPP--GPPGL 764
Score = 34.7 bits (78), Expect = 0.11
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 27 PTAFQGPPGYSGYPGPQVSYPPPPAGHSGP-GPAGFPVPNQPVYNQPVYNQPVGAAGVPW 85
P G PG G PGPQ P G GP GP G P N P ++ G G P
Sbjct: 1383 PPGIPGQPGLKGLPGPQ-----GPQGLPGPTGPPGDPGRN----GLPGFDGAGGRKGDPG 1433
Query: 86 MPAPQP---PLNCPPG 98
+P QP L+ PPG
Sbjct: 1434 LPG-QPGTRGLDGPPG 1448
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/94 (31%), Positives = 34/94 (36%), Gaps = 16/94 (17%)
Query: 19 VGYPPQYPPTAFQGPPGYSGYPGPQVS--------YPPPPAGHSGPGPAGFP-VPNQPVY 69
+G P P G PGY G PG + S P P PG GFP P P
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP-- 1130
Query: 70 NQPVYNQPVGAAGVPWMPAP-----QPPLNCPPG 98
+ P G G+P P P P PPG
Sbjct: 1131 GPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPG 1164
Score = 33.9 bits (76), Expect = 0.20
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQ--VSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYN 75
P G+P + +GPPG S PGP P P PGPAG +P +P
Sbjct: 398 PPGFPGERGQKGDEGPPGIS-IPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPP 456
Query: 76 QPVGAAG 82
P G+ G
Sbjct: 457 GPPGSPG 463
Score = 33.1 bits (74), Expect = 0.33
Identities = 34/112 (30%), Positives = 41/112 (36%), Gaps = 34/112 (30%)
Query: 13 PETNLPVGYPPQYPPTAFQGPPGYSGY--PGPQ-------------------VSYPPPPA 51
P T +G P F GP G G+ PGP PP P
Sbjct: 727 PGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPP 786
Query: 52 GHSG----PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGL 99
G +G PGP G PN QP P+G G+P + PP PPG+
Sbjct: 787 GRTGLDGLPGPKGDVGPN----GQP---GPMGPPGLPGIGVQGPP--GPPGI 829
Score = 32.7 bits (73), Expect = 0.44
Identities = 34/109 (31%), Positives = 39/109 (35%), Gaps = 29/109 (26%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYP---------GPQVSYPPPPAGHSG------------- 55
P G P +GPPG G P GP PP P G G
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGI 648
Query: 56 PGPAGFP-----VPNQP-VYNQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
PGP G P P +P + P + VG G P +P QP L PG
Sbjct: 649 PGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPG-QPGLPGIPG 696
Score = 31.6 bits (70), Expect = 0.97
Identities = 32/92 (34%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGP---AGFPVPNQPVYN 70
P G P +G PG G+PG Q PP P G G PG + P P
Sbjct: 118 PQGIPGCNGTKGERGFPGSPGFPGLQ--GPPGPPGIPGMKGEPGSIIMSSLPGPK----G 171
Query: 71 QPVYNQPVGAAGVP---WMPAPQPPLNCPPGL 99
P Y P G G+P +P P P PPGL
Sbjct: 172 NPGYPGPPGIQGLPGPTGIPGPIGPPG-PPGL 202
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 32 GPPGYSGYPGPQVSYPPPPAGHSGP---GPAGFP----VPNQPVYNQPVYNQPVGAAGVP 84
G PG G PG ++ P P P G G P +P QP P G G+P
Sbjct: 647 GIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQP--GLPGIPGSKGEPGIP 704
Query: 85 WMPAPQPP 92
+ P PP
Sbjct: 705 GIGLPGPP 712
Score = 30.4 bits (67), Expect = 2.2
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 19/82 (23%)
Query: 32 GPPGYSGYPGPQ-------------VSYPPPPAGHSG-PGPAGFP--VPNQPVYNQPVYN 75
GPPG G PG + PP P G G PG +G P + + QP
Sbjct: 875 GPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLP 934
Query: 76 QPV---GAAGVPWMPAPQPPLN 94
P G+ G P +P P P++
Sbjct: 935 GPTGEKGSKGEPGLPGPPGPMD 956
Score = 30.0 bits (66), Expect = 2.8
Identities = 32/102 (31%), Positives = 35/102 (34%), Gaps = 23/102 (22%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGP-----QVSYP--PPPAGHSG------------PGP 58
P G F GP G G PGP Q P P G G PGP
Sbjct: 1022 PPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGP 1081
Query: 59 AGFP-VPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGL 99
G P +P P P VG G+P +P P PGL
Sbjct: 1082 KGEPGLPGYP--GNPGIKGSVGDPGLPGLPG-TPGAKGQPGL 1120
Score = 29.6 bits (65), Expect = 3.7
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 22/89 (24%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-------PGPAGFP-VPNQPVY 69
P G P Q GP G G PGP + PP G +G G G P +P QP
Sbjct: 1383 PPGIPGQPGLKGLPGPQGPQGLPGP--TGPPGDPGRNGLPGFDGAGGRKGDPGLPGQP-- 1438
Query: 70 NQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
G G+ P P L PPG
Sbjct: 1439 ---------GTRGLDGPPGPD-GLQGPPG 1457
Score = 29.3 bits (64), Expect = 4.8
Identities = 29/98 (29%), Positives = 34/98 (34%), Gaps = 32/98 (32%)
Query: 31 QGPPGYSGYPG-------------PQVSYPPPPAGHSG----------------PGPAGF 61
QGPPG G PG P V P G SG PGP G
Sbjct: 1308 QGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGL 1367
Query: 62 PVPN-QPVYNQPVYNQP--VGAAGVPWMPAPQPPLNCP 96
P P+ Q + + P G G+ +P PQ P P
Sbjct: 1368 PGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLP 1405
Score = 28.5 bits (62), Expect = 8.2
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 32 GPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ 90
G PGY G PG G +G PGP G +P + G G+P +P +
Sbjct: 316 GDPGYPGEPGRDGE--KGQKGDTGPPGPPGLVIPRP---GTGITIGEKGNIGLPGLPGEK 370
Query: 91 -----PPLNCPPGL 99
P + PPGL
Sbjct: 371 GERGFPGIQGPPGL 384
Score = 28.5 bits (62), Expect = 8.2
Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 21/91 (23%)
Query: 27 PTAFQGPPGYSGYPGP------------QVSYPPPPAGHSGPGPAGFP-------VPNQP 67
P G PG G PGP ++ P PP PG G
Sbjct: 421 PPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT 480
Query: 68 VYN--QPVYNQPVGAAGVPWMPAPQPPLNCP 96
+N + P G G+P +P P L P
Sbjct: 481 CFNCIGTGISGPPGQPGLPGLPGPPGSLGFP 511
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 46.2 bits (108), Expect = 4e-05
Identities = 30/81 (37%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGP--QVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYN 75
P+G PP P QGPPG G PGP Q P PGP G VP P
Sbjct: 809 PMG-PPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER----- 862
Query: 76 QPVGAAGVPWMPAPQPPLNCP 96
G+ G+P P P P P
Sbjct: 863 ---GSPGIPGAPGPIGPPGSP 880
Score = 45.8 bits (107), Expect = 5e-05
Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 31 QGPPGYSGYPGPQVSYPPPPAGHSG-------PGPAGFPVPNQPVYNQPVYNQPVGAAGV 83
QGPPG G PG V PP P G G GP G +P P + QP GA G+
Sbjct: 379 QGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLD----GQP-GAPGL 433
Query: 84 PWMPAPQPPLNCPPGLE 100
P P P P + PP E
Sbjct: 434 PGPPGPAGP-HIPPSDE 449
Score = 40.8 bits (94), Expect = 0.002
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQP 77
P G P P QG PG +G PGP + P PP PGP G P P + + P
Sbjct: 169 PKGNPGYPGPPGIQGLPGPTGIPGP-IGPPGPPGLMGPPGPPGLPGPKGNMGLN--FQGP 225
Query: 78 VGAAGVPWMPAPQPP 92
G G + P P
Sbjct: 226 KGEKGEQGLQGPPGP 240
Score = 40.0 bits (92), Expect = 0.003
Identities = 31/107 (28%), Positives = 37/107 (34%), Gaps = 27/107 (25%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFP----------VPNQPVY 69
G P P +GPPG G+PG P P PGP G P P P +
Sbjct: 81 GIPGPPGPKGIRGPPGLPGFPGTP-GLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGF 139
Query: 70 NQPVYNQPVGAAGVPWM--------------PAPQPPLNCPPGLEYL 102
P P G G+P M P P PPG++ L
Sbjct: 140 --PGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGL 184
Score = 39.7 bits (91), Expect = 0.004
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGP--QVSYPPPPAGHSGPGPAGFP-------------VP 64
G+P Q P +G PG G PGP Q P P G PGP G P +P
Sbjct: 1155 GHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQP-GFGNPGPPGLPGLSGQKGDGGLPGIP 1213
Query: 65 NQP----VYNQPVYNQPVGAAGVPWMP-APQPPLNCPPG 98
P +P ++ G G P P +P P L P G
Sbjct: 1214 GNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKG 1252
Score = 38.9 bits (89), Expect = 0.006
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 11 SHPETNLP-VGYPPQYPPTAFQGPPGYSGYPGPQ----VSYPPPPAGHSGP-GPAGFPVP 64
S E +P +G P P F G PG G PG + PP P G GP G GF +P
Sbjct: 697 SKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALP 756
Query: 65 NQP-VYNQPVYNQPVGAAGVPWMPAPQPP 92
P P + +G G P P P
Sbjct: 757 GPPGPPGLPGFKGALGPKGDRGFPGPPGP 785
Score = 38.1 bits (87), Expect = 0.010
Identities = 34/99 (34%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGPAGFP------------- 62
G P PT +G G G PGP P G G PG G P
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPG 988
Query: 63 VPNQP-VYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLE 100
P QP + QP P G G P +P QP L PPGL+
Sbjct: 989 DPGQPGLSGQPGLPGPPGPKGNPGLPG-QPGLIGPPGLK 1026
Score = 37.7 bits (86), Expect = 0.014
Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQP---VYNQPV 73
P G P + QGPPG G PGP + P G G PG G P P P N +
Sbjct: 1221 PKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGLPGPEGPPGLPGNGGI 1280
Query: 74 YNQP--VGAAGVPWMPAPQPPLNCPPGLE 100
+ G G+P +P + PPGL+
Sbjct: 1281 KGEKGNPGQPGLPGLPGLKGDQG-PPGLQ 1308
Score = 37.4 bits (85), Expect = 0.018
Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 35/103 (33%)
Query: 22 PPQYPPT----AFQGPPGYSGYPGPQ------VSYPPPPAGHSG-------PGPAGFPVP 64
PP P T +GPPG G+PGP+ + PP P G G G GFP P
Sbjct: 723 PPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGP 782
Query: 65 NQPVYNQPVYNQPVGAAGVPWMPAP--------QPPLNCPPGL 99
P G G+ +P P QP PPGL
Sbjct: 783 ----------PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL 815
Score = 36.6 bits (83), Expect = 0.030
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQ-VSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPV 78
G P P +G G G+PGPQ V PP P+G PG G P P + +
Sbjct: 1015 GQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSG--VPGQPG--SPGLPGQKGDKGDPGI 1070
Query: 79 GAAGVPWMPAP--QPPLNCPPG 98
+ G+P +P P +P L PG
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPG 1092
Score = 36.2 bits (82), Expect = 0.040
Identities = 30/84 (35%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVG 79
G P P GPPG G PG P P G PG G P + Q P G
Sbjct: 1125 GTPGPPGPKGISGPPGNPGLPGE----PGPVGGGGHPGQPG-PPGEKGKPGQDGIPGPAG 1179
Query: 80 AAGVPWMPAPQPPLNCPPGLEYLS 103
G P P P PPGL LS
Sbjct: 1180 QKGEPGQPGFGNP--GPPGLPGLS 1201
Score = 35.0 bits (79), Expect = 0.088
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 26/93 (27%)
Query: 31 QGPPGYSGYPGPQ-------------VSYPPPPAGHSG-PGPAGFP----VPNQPVYNQ- 71
+G PG G+PGP+ + PP P G G PG GFP +P P ++
Sbjct: 56 EGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGA 115
Query: 72 ------PVYNQPVGAAGVPWMPAPQPPLNCPPG 98
P N G G P P P L PPG
Sbjct: 116 PGPQGIPGCNGTKGERGFPGSPG-FPGLQGPPG 147
Score = 35.0 bits (79), Expect = 0.088
Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQP- 77
G P Q G G G PG + PP P G G PGP G P + + P
Sbjct: 684 GLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPG 743
Query: 78 -VGAAGVPWMPAPQPPLNCPPGL 99
G G P P PP PPGL
Sbjct: 744 FPGPKGEPGFALPGPP--GPPGL 764
Score = 34.7 bits (78), Expect = 0.11
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 27 PTAFQGPPGYSGYPGPQVSYPPPPAGHSGP-GPAGFPVPNQPVYNQPVYNQPVGAAGVPW 85
P G PG G PGPQ P G GP GP G P N P ++ G G P
Sbjct: 1377 PPGIPGQPGLKGLPGPQ-----GPQGLPGPTGPPGDPGRN----GLPGFDGAGGRKGDPG 1427
Query: 86 MPAPQP---PLNCPPG 98
+P QP L+ PPG
Sbjct: 1428 LPG-QPGTRGLDGPPG 1442
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/94 (31%), Positives = 34/94 (36%), Gaps = 16/94 (17%)
Query: 19 VGYPPQYPPTAFQGPPGYSGYPGPQVS--------YPPPPAGHSGPGPAGFP-VPNQPVY 69
+G P P G PGY G PG + S P P PG GFP P P
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP-- 1130
Query: 70 NQPVYNQPVGAAGVPWMPAP-----QPPLNCPPG 98
+ P G G+P P P P PPG
Sbjct: 1131 GPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPG 1164
Score = 33.9 bits (76), Expect = 0.20
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQ--VSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYN 75
P G+P + +GPPG S PGP P P PGPAG +P +P
Sbjct: 398 PPGFPGERGQKGDEGPPGIS-IPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPP 456
Query: 76 QPVGAAG 82
P G+ G
Sbjct: 457 GPPGSPG 463
Score = 33.1 bits (74), Expect = 0.33
Identities = 34/112 (30%), Positives = 41/112 (36%), Gaps = 34/112 (30%)
Query: 13 PETNLPVGYPPQYPPTAFQGPPGYSGY--PGPQ-------------------VSYPPPPA 51
P T +G P F GP G G+ PGP PP P
Sbjct: 727 PGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPP 786
Query: 52 GHSG----PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGL 99
G +G PGP G PN QP P+G G+P + PP PPG+
Sbjct: 787 GRTGLDGLPGPKGDVGPN----GQP---GPMGPPGLPGIGVQGPP--GPPGI 829
Score = 32.7 bits (73), Expect = 0.44
Identities = 34/109 (31%), Positives = 39/109 (35%), Gaps = 29/109 (26%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYP---------GPQVSYPPPPAGHSG------------- 55
P G P +GPPG G P GP PP P G G
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGI 648
Query: 56 PGPAGFP-----VPNQP-VYNQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
PGP G P P +P + P + VG G P +P QP L PG
Sbjct: 649 PGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPG-QPGLPGIPG 696
Score = 31.6 bits (70), Expect = 0.97
Identities = 32/92 (34%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGP---AGFPVPNQPVYN 70
P G P +G PG G+PG Q PP P G G PG + P P
Sbjct: 118 PQGIPGCNGTKGERGFPGSPGFPGLQ--GPPGPPGIPGMKGEPGSIIMSSLPGPK----G 171
Query: 71 QPVYNQPVGAAGVP---WMPAPQPPLNCPPGL 99
P Y P G G+P +P P P PPGL
Sbjct: 172 NPGYPGPPGIQGLPGPTGIPGPIGPPG-PPGL 202
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 32 GPPGYSGYPGPQVSYPPPPAGHSGP---GPAGFP----VPNQPVYNQPVYNQPVGAAGVP 84
G PG G PG ++ P P P G G P +P QP P G G+P
Sbjct: 647 GIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQP--GLPGIPGSKGEPGIP 704
Query: 85 WMPAPQPP 92
+ P PP
Sbjct: 705 GIGLPGPP 712
Score = 30.4 bits (67), Expect = 2.2
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 19/82 (23%)
Query: 32 GPPGYSGYPGPQ-------------VSYPPPPAGHSG-PGPAGFP--VPNQPVYNQPVYN 75
GPPG G PG + PP P G G PG +G P + + QP
Sbjct: 875 GPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLP 934
Query: 76 QPV---GAAGVPWMPAPQPPLN 94
P G+ G P +P P P++
Sbjct: 935 GPTGEKGSKGEPGLPGPPGPMD 956
Score = 30.0 bits (66), Expect = 2.8
Identities = 32/102 (31%), Positives = 35/102 (34%), Gaps = 23/102 (22%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGP-----QVSYP--PPPAGHSG------------PGP 58
P G F GP G G PGP Q P P G G PGP
Sbjct: 1022 PPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGP 1081
Query: 59 AGFP-VPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGL 99
G P +P P P VG G+P +P P PGL
Sbjct: 1082 KGEPGLPGYP--GNPGIKGSVGDPGLPGLPG-TPGAKGQPGL 1120
Score = 29.6 bits (65), Expect = 3.7
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 22/89 (24%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-------PGPAGFP-VPNQPVY 69
P G P Q GP G G PGP + PP G +G G G P +P QP
Sbjct: 1377 PPGIPGQPGLKGLPGPQGPQGLPGP--TGPPGDPGRNGLPGFDGAGGRKGDPGLPGQP-- 1432
Query: 70 NQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
G G+ P P L PPG
Sbjct: 1433 ---------GTRGLDGPPGPD-GLQGPPG 1451
Score = 29.3 bits (64), Expect = 4.8
Identities = 29/98 (29%), Positives = 34/98 (34%), Gaps = 32/98 (32%)
Query: 31 QGPPGYSGYPG-------------PQVSYPPPPAGHSG----------------PGPAGF 61
QGPPG G PG P V P G SG PGP G
Sbjct: 1302 QGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGL 1361
Query: 62 PVPN-QPVYNQPVYNQP--VGAAGVPWMPAPQPPLNCP 96
P P+ Q + + P G G+ +P PQ P P
Sbjct: 1362 PGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLP 1399
Score = 28.5 bits (62), Expect = 8.2
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 32 GPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ 90
G PGY G PG G +G PGP G +P + G G+P +P +
Sbjct: 316 GDPGYPGEPGRDGE--KGQKGDTGPPGPPGLVIPRP---GTGITIGEKGNIGLPGLPGEK 370
Query: 91 -----PPLNCPPGL 99
P + PPGL
Sbjct: 371 GERGFPGIQGPPGL 384
Score = 28.5 bits (62), Expect = 8.2
Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 21/91 (23%)
Query: 27 PTAFQGPPGYSGYPGP------------QVSYPPPPAGHSGPGPAGFP-------VPNQP 67
P G PG G PGP ++ P PP PG G
Sbjct: 421 PPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT 480
Query: 68 VYN--QPVYNQPVGAAGVPWMPAPQPPLNCP 96
+N + P G G+P +P P L P
Sbjct: 481 CFNCIGTGISGPPGQPGLPGLPGPPGSLGFP 511
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 46.2 bits (108), Expect = 4e-05
Identities = 30/81 (37%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGP--QVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYN 75
P+G PP P QGPPG G PGP Q P PGP G VP P
Sbjct: 809 PMG-PPGLPGIGVQGPPGPPGIPGPIGQPGLHGIPGEKGDPGPPGLDVPGPPGER----- 862
Query: 76 QPVGAAGVPWMPAPQPPLNCP 96
G+ G+P P P P P
Sbjct: 863 ---GSPGIPGAPGPIGPPGSP 880
Score = 45.8 bits (107), Expect = 5e-05
Identities = 31/77 (40%), Positives = 35/77 (45%), Gaps = 13/77 (16%)
Query: 31 QGPPGYSGYPGPQVSYPPPPAGHSG-------PGPAGFPVPNQPVYNQPVYNQPVGAAGV 83
QGPPG G PG V PP P G G GP G +P P + QP GA G+
Sbjct: 379 QGPPGLPGPPGAAVMGPPGPPGFPGERGQKGDEGPPGISIPGPPGLD----GQP-GAPGL 433
Query: 84 PWMPAPQPPLNCPPGLE 100
P P P P + PP E
Sbjct: 434 PGPPGPAGP-HIPPSDE 449
Score = 40.8 bits (94), Expect = 0.002
Identities = 26/75 (34%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQP 77
P G P P QG PG +G PGP + P PP PGP G P P + + P
Sbjct: 169 PKGNPGYPGPPGIQGLPGPTGIPGP-IGPPGPPGLMGPPGPPGLPGPKGNMGLN--FQGP 225
Query: 78 VGAAGVPWMPAPQPP 92
G G + P P
Sbjct: 226 KGEKGEQGLQGPPGP 240
Score = 40.0 bits (92), Expect = 0.003
Identities = 31/107 (28%), Positives = 37/107 (34%), Gaps = 27/107 (25%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFP----------VPNQPVY 69
G P P +GPPG G+PG P P PGP G P P P +
Sbjct: 81 GIPGPPGPKGIRGPPGLPGFPGTP-GLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGF 139
Query: 70 NQPVYNQPVGAAGVPWM--------------PAPQPPLNCPPGLEYL 102
P P G G+P M P P PPG++ L
Sbjct: 140 --PGLQGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPGIQGL 184
Score = 39.7 bits (91), Expect = 0.004
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGP--QVSYPPPPAGHSGPGPAGFP-------------VP 64
G+P Q P +G PG G PGP Q P P G PGP G P +P
Sbjct: 1155 GHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQP-GFGNPGPPGLPGLSGQKGDGGLPGIP 1213
Query: 65 NQP----VYNQPVYNQPVGAAGVPWMP-APQPPLNCPPG 98
P +P ++ G G P P +P P L P G
Sbjct: 1214 GNPGLPGPKGEPGFHGFPGVQGPPGPPGSPGPALEGPKG 1252
Score = 38.9 bits (89), Expect = 0.006
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 7/89 (7%)
Query: 11 SHPETNLP-VGYPPQYPPTAFQGPPGYSGYPGPQ----VSYPPPPAGHSGP-GPAGFPVP 64
S E +P +G P P F G PG G PG + PP P G GP G GF +P
Sbjct: 697 SKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALP 756
Query: 65 NQP-VYNQPVYNQPVGAAGVPWMPAPQPP 92
P P + +G G P P P
Sbjct: 757 GPPGPPGLPGFKGALGPKGDRGFPGPPGP 785
Score = 38.1 bits (87), Expect = 0.010
Identities = 34/99 (34%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGPAGFP------------- 62
G P PT +G G G PGP P G G PG G P
Sbjct: 929 GQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGVSGPKGYQGLPG 988
Query: 63 VPNQP-VYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLE 100
P QP + QP P G G P +P QP L PPGL+
Sbjct: 989 DPGQPGLSGQPGLPGPPGPKGNPGLPG-QPGLIGPPGLK 1026
Score = 37.7 bits (86), Expect = 0.014
Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 10/92 (10%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYP---PPPAGHSG-PGPAGFPVPNQP---VYN 70
P G P + QGPPG G PGP + P P P G G PG G P P P N
Sbjct: 1221 PKGEPGFHGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGFQGLPGPEGPPGLPGN 1280
Query: 71 QPVYNQP--VGAAGVPWMPAPQPPLNCPPGLE 100
+ + G G+P +P + PPGL+
Sbjct: 1281 GGIKGEKGNPGQPGLPGLPGLKGDQG-PPGLQ 1311
Score = 37.4 bits (85), Expect = 0.018
Identities = 33/103 (32%), Positives = 39/103 (37%), Gaps = 35/103 (33%)
Query: 22 PPQYPPT----AFQGPPGYSGYPGPQ------VSYPPPPAGHSG-------PGPAGFPVP 64
PP P T +GPPG G+PGP+ + PP P G G G GFP P
Sbjct: 723 PPGAPGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGP 782
Query: 65 NQPVYNQPVYNQPVGAAGVPWMPAP--------QPPLNCPPGL 99
P G G+ +P P QP PPGL
Sbjct: 783 ----------PGPPGRTGLDGLPGPKGDVGPNGQPGPMGPPGL 815
Score = 36.6 bits (83), Expect = 0.030
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQ-VSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPV 78
G P P +G G G+PGPQ V PP P+G PG G P P + +
Sbjct: 1015 GQPGLIGPPGLKGTIGDMGFPGPQGVEGPPGPSG--VPGQPG--SPGLPGQKGDKGDPGI 1070
Query: 79 GAAGVPWMPAP--QPPLNCPPG 98
+ G+P +P P +P L PG
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPG 1092
Score = 36.2 bits (82), Expect = 0.040
Identities = 30/84 (35%), Positives = 31/84 (36%), Gaps = 7/84 (8%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVG 79
G P P GPPG G PG P P G PG G P + Q P G
Sbjct: 1125 GTPGPPGPKGISGPPGNPGLPGE----PGPVGGGGHPGQPG-PPGEKGKPGQDGIPGPAG 1179
Query: 80 AAGVPWMPAPQPPLNCPPGLEYLS 103
G P P P PPGL LS
Sbjct: 1180 QKGEPGQPGFGNP--GPPGLPGLS 1201
Score = 35.0 bits (79), Expect = 0.088
Identities = 30/93 (32%), Positives = 37/93 (39%), Gaps = 26/93 (27%)
Query: 31 QGPPGYSGYPGPQ-------------VSYPPPPAGHSG-PGPAGFP----VPNQPVYNQ- 71
+G PG G+PGP+ + PP P G G PG GFP +P P ++
Sbjct: 56 EGHPGLPGFPGPEGPPGPRGQKGDDGIPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGA 115
Query: 72 ------PVYNQPVGAAGVPWMPAPQPPLNCPPG 98
P N G G P P P L PPG
Sbjct: 116 PGPQGIPGCNGTKGERGFPGSPG-FPGLQGPPG 147
Score = 35.0 bits (79), Expect = 0.088
Identities = 29/83 (34%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 20 GYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQP- 77
G P Q G G G PG + PP P G G PGP G P + + P
Sbjct: 684 GLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPG 743
Query: 78 -VGAAGVPWMPAPQPPLNCPPGL 99
G G P P PP PPGL
Sbjct: 744 FPGPKGEPGFALPGPP--GPPGL 764
Score = 34.7 bits (78), Expect = 0.11
Identities = 29/76 (38%), Positives = 33/76 (43%), Gaps = 14/76 (18%)
Query: 27 PTAFQGPPGYSGYPGPQVSYPPPPAGHSGP-GPAGFPVPNQPVYNQPVYNQPVGAAGVPW 85
P G PG G PGPQ P G GP GP G P N P ++ G G P
Sbjct: 1380 PPGIPGQPGLKGLPGPQ-----GPQGLPGPTGPPGDPGRN----GLPGFDGAGGRKGDPG 1430
Query: 86 MPAPQP---PLNCPPG 98
+P QP L+ PPG
Sbjct: 1431 LPG-QPGTRGLDGPPG 1445
Score = 34.3 bits (77), Expect = 0.15
Identities = 30/94 (31%), Positives = 34/94 (36%), Gaps = 16/94 (17%)
Query: 19 VGYPPQYPPTAFQGPPGYSGYPGPQVS--------YPPPPAGHSGPGPAGFP-VPNQPVY 69
+G P P G PGY G PG + S P P PG GFP P P
Sbjct: 1073 IGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPP-- 1130
Query: 70 NQPVYNQPVGAAGVPWMPAP-----QPPLNCPPG 98
+ P G G+P P P P PPG
Sbjct: 1131 GPKGISGPPGNPGLPGEPGPVGGGGHPGQPGPPG 1164
Score = 33.9 bits (76), Expect = 0.20
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQ--VSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYN 75
P G+P + +GPPG S PGP P P PGPAG +P +P
Sbjct: 398 PPGFPGERGQKGDEGPPGIS-IPGPPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPP 456
Query: 76 QPVGAAG 82
P G+ G
Sbjct: 457 GPPGSPG 463
Score = 33.1 bits (74), Expect = 0.33
Identities = 34/112 (30%), Positives = 41/112 (36%), Gaps = 34/112 (30%)
Query: 13 PETNLPVGYPPQYPPTAFQGPPGYSGY--PGPQ-------------------VSYPPPPA 51
P T +G P F GP G G+ PGP PP P
Sbjct: 727 PGTPGRIGLEGPPGPPGFPGPKGEPGFALPGPPGPPGLPGFKGALGPKGDRGFPGPPGPP 786
Query: 52 GHSG----PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGL 99
G +G PGP G PN QP P+G G+P + PP PPG+
Sbjct: 787 GRTGLDGLPGPKGDVGPN----GQP---GPMGPPGLPGIGVQGPP--GPPGI 829
Score = 32.7 bits (73), Expect = 0.44
Identities = 34/109 (31%), Positives = 39/109 (35%), Gaps = 29/109 (26%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYP---------GPQVSYPPPPAGHSG------------- 55
P G P +GPPG G P GP PP P G G
Sbjct: 589 PKGEPGGITFKGERGPPGNPGLPGLPGNIGPMGPPGFGPPGPVGEKGIQGVAGNPGQPGI 648
Query: 56 PGPAGFP-----VPNQP-VYNQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
PGP G P P +P + P + VG G P +P QP L PG
Sbjct: 649 PGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPG-QPGLPGIPG 696
Score = 31.6 bits (70), Expect = 0.97
Identities = 32/92 (34%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG----PGP---AGFPVPNQPVYN 70
P G P +G PG G+PG Q PP P G G PG + P P
Sbjct: 118 PQGIPGCNGTKGERGFPGSPGFPGLQ--GPPGPPGIPGMKGEPGSIIMSSLPGPK----G 171
Query: 71 QPVYNQPVGAAGVP---WMPAPQPPLNCPPGL 99
P Y P G G+P +P P P PPGL
Sbjct: 172 NPGYPGPPGIQGLPGPTGIPGPIGPPG-PPGL 202
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 32 GPPGYSGYPGPQVSYPPPPAGHSGP---GPAGFP----VPNQPVYNQPVYNQPVGAAGVP 84
G PG G PG ++ P P P G G P +P QP P G G+P
Sbjct: 647 GIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQP--GLPGIPGSKGEPGIP 704
Query: 85 WMPAPQPP 92
+ P PP
Sbjct: 705 GIGLPGPP 712
Score = 30.4 bits (67), Expect = 2.2
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 19/82 (23%)
Query: 32 GPPGYSGYPGPQ-------------VSYPPPPAGHSG-PGPAGFP--VPNQPVYNQPVYN 75
GPPG G PG + PP P G G PG +G P + + QP
Sbjct: 875 GPPGSPGLPGKAGASGFPGTKGEMGMMGPPGPPGPLGIPGRSGVPGLKGDDGLQGQPGLP 934
Query: 76 QPV---GAAGVPWMPAPQPPLN 94
P G+ G P +P P P++
Sbjct: 935 GPTGEKGSKGEPGLPGPPGPMD 956
Score = 30.0 bits (66), Expect = 2.8
Identities = 32/102 (31%), Positives = 35/102 (34%), Gaps = 23/102 (22%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGP-----QVSYP--PPPAGHSG------------PGP 58
P G F GP G G PGP Q P P G G PGP
Sbjct: 1022 PPGLKGTIGDMGFPGPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGP 1081
Query: 59 AGFP-VPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGL 99
G P +P P P VG G+P +P P PGL
Sbjct: 1082 KGEPGLPGYP--GNPGIKGSVGDPGLPGLPG-TPGAKGQPGL 1120
Score = 29.6 bits (65), Expect = 3.7
Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 22/89 (24%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSG-------PGPAGFP-VPNQPVY 69
P G P Q GP G G PGP + PP G +G G G P +P QP
Sbjct: 1380 PPGIPGQPGLKGLPGPQGPQGLPGP--TGPPGDPGRNGLPGFDGAGGRKGDPGLPGQP-- 1435
Query: 70 NQPVYNQPVGAAGVPWMPAPQPPLNCPPG 98
G G+ P P L PPG
Sbjct: 1436 ---------GTRGLDGPPGPD-GLQGPPG 1454
Score = 29.3 bits (64), Expect = 4.8
Identities = 29/98 (29%), Positives = 34/98 (34%), Gaps = 32/98 (32%)
Query: 31 QGPPGYSGYPG-------------PQVSYPPPPAGHSG----------------PGPAGF 61
QGPPG G PG P V P G SG PGP G
Sbjct: 1305 QGPPGLQGNPGRPGLNGMKGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGL 1364
Query: 62 PVPN-QPVYNQPVYNQP--VGAAGVPWMPAPQPPLNCP 96
P P+ Q + + P G G+ +P PQ P P
Sbjct: 1365 PGPSGQSIIIKGDAGPPGIPGQPGLKGLPGPQGPQGLP 1402
Score = 28.5 bits (62), Expect = 8.2
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 32 GPPGYSGYPGPQVSYPPPPAGHSG-PGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQ 90
G PGY G PG G +G PGP G +P + G G+P +P +
Sbjct: 316 GDPGYPGEPGRDGE--KGQKGDTGPPGPPGLVIPRP---GTGITIGEKGNIGLPGLPGEK 370
Query: 91 -----PPLNCPPGL 99
P + PPGL
Sbjct: 371 GERGFPGIQGPPGL 384
Score = 28.5 bits (62), Expect = 8.2
Identities = 23/91 (25%), Positives = 29/91 (31%), Gaps = 21/91 (23%)
Query: 27 PTAFQGPPGYSGYPGP------------QVSYPPPPAGHSGPGPAGFP-------VPNQP 67
P G PG G PGP ++ P PP PG G
Sbjct: 421 PPGLDGQPGAPGLPGPPGPAGPHIPPSDEICEPGPPGPPGSPGDKGLQGEQGVKGDKGDT 480
Query: 68 VYN--QPVYNQPVGAAGVPWMPAPQPPLNCP 96
+N + P G G+P +P P L P
Sbjct: 481 CFNCIGTGISGPPGQPGLPGLPGPPGSLGFP 511
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 45.8 bits (107), Expect = 5e-05
Identities = 40/127 (31%), Positives = 50/127 (39%), Gaps = 16/127 (12%)
Query: 3 KQNSQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGY-----PGPQVSYPPPPAGHSGPG 57
+Q Q + P PPQ P T Q P Y PGP++S P P P
Sbjct: 224 QQQQQQQQQQQQQQQPQQQPPQ-PQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPA 282
Query: 58 PAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYL----SQIDQILIHQQ 113
P G P P P QP AA VP PQP P + L S+I I Q
Sbjct: 283 PGGRPSPAPPAAAQP------PAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQG 336
Query: 114 IELLEVL 120
++ +E+L
Sbjct: 337 LDPVEIL 343
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 45.8 bits (107), Expect = 5e-05
Identities = 40/127 (31%), Positives = 50/127 (39%), Gaps = 16/127 (12%)
Query: 3 KQNSQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGY-----PGPQVSYPPPPAGHSGPG 57
+Q Q + P PPQ P T Q P Y PGP++S P P P
Sbjct: 224 QQQQQQQQQQQQQQQPQQQPPQ-PQTQQQQQPALVNYNRPSGPGPELSGPSTPQKLPVPA 282
Query: 58 PAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEYL----SQIDQILIHQQ 113
P G P P P QP AA VP PQP P + L S+I I Q
Sbjct: 283 PGGRPSPAPPAAAQP------PAAAVPGPSVPQPAPGQPSPVLQLQQKQSRISPIQKPQG 336
Query: 114 IELLEVL 120
++ +E+L
Sbjct: 337 LDPVEIL 343
>gi|21361376 splicing factor 3a, subunit 2 [Homo sapiens]
Length = 464
Score = 45.4 bits (106), Expect = 7e-05
Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 23 PQYPPTAFQGPPGYSGYPGPQVS----YPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPV 78
P PP+ GPPG P P ++ PP P P P G P+P P P P
Sbjct: 217 PPAPPSLPAGPPGVKRPPPPLMNGLPPRPPLPESLPPPPPGGLPLPPMP----PTGPAPS 272
Query: 79 GAAGVPWMPAPQPPLNCP 96
G G P +P P P ++ P
Sbjct: 273 GPPGPPQLPPPAPGVHPP 290
Score = 35.4 bits (80), Expect = 0.067
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 22 PPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGH------SGPGPAGFPVPNQPVYNQPVYN 75
P +PPT+ PP +P +PP P H P P P P+ V+ Q
Sbjct: 320 PGVHPPTSGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPAPGVHPPPSAGVHPQAPGV 379
Query: 76 QPVGAAGVPWMPAPQPP 92
P A P P PP
Sbjct: 380 HPAAPAVHPQAPGVHPP 396
Score = 31.2 bits (69), Expect = 1.3
Identities = 26/81 (32%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPV-----PNQPVYNQP 72
P G P PP Q PP G P PP +G P P P P P + P
Sbjct: 266 PTGPAPSGPPGPPQLPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHPPAPGVHPP 325
Query: 73 VYNQPVGAAGV-PWMPAPQPP 92
A GV P P PP
Sbjct: 326 TSGVHPPAPGVHPPAPGVHPP 346
Score = 30.8 bits (68), Expect = 1.7
Identities = 26/90 (28%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 17 LPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPV-----PNQPVYNQ 71
LP P +PP PP +P +PP P H P P P P P +
Sbjct: 280 LPPPAPGVHPPAPVVHPPASGVHPPAPGVHPPAPGVHP-PAPGVHPPTSGVHPPAPGVHP 338
Query: 72 PVYNQPVGAAGV----PWMPAPQPPLNCPP 97
P A GV P + P P ++ PP
Sbjct: 339 PAPGVHPPAPGVHPPAPGVHPPAPGVHPPP 368
Score = 29.6 bits (65), Expect = 3.7
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 15/90 (16%)
Query: 10 ASHPETNLPVGYPP---QYP--PTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVP 64
A HP+ P +PP +P P PPG +P +P PP H P P
Sbjct: 385 AVHPQA--PGVHPPAPGMHPQAPGVHPQPPGV--HPSAPGVHPQPPGVHPSNPGVHPPTP 440
Query: 65 NQPVYNQPVYNQPVGAAGVPWMPAPQPPLN 94
P+ P+ ++ G +P P PP N
Sbjct: 441 MPPMLRPPLPSE--GPGNIP----PPPPTN 464
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 45.1 bits (105), Expect = 9e-05
Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 13 PETNLPVGYPPQYPP-----TAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQP 67
P+ P PPQ PP + + PPG S Y + P A S P + + P QP
Sbjct: 598 PQQPPPPQPPPQQPPPPPSYSPARNPPGASTY-NKNSNIPGSSANTSTPTVSSYSPP-QP 655
Query: 68 VYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEY 101
Y+QP YNQ + G P P PP PP Y
Sbjct: 656 SYSQPPYNQGGYSQGYTAPPPPPPP---PPAYNY 686
Score = 42.4 bits (98), Expect = 6e-04
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 4 QNSQMNASHPETNLPVGYPPQYPPTAFQGPP----GYS-GYPGPQVSYPPPPA----GHS 54
+NS + S T+ P P ++ PP GYS GY P PPPPA +
Sbjct: 631 KNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYG 690
Query: 55 GPGPAGF---PVPNQPVYNQPVYNQ 76
G PA + P P Y QP YNQ
Sbjct: 691 GYNPAPYTPPPPPTAQTYPQPSYNQ 715
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 45.1 bits (105), Expect = 9e-05
Identities = 33/94 (35%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 13 PETNLPVGYPPQYPP-----TAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQP 67
P+ P PPQ PP + + PPG S Y + P A S P + + P QP
Sbjct: 698 PQQPPPPQPPPQQPPPPPSYSPARNPPGASTY-NKNSNIPGSSANTSTPTVSSYSPP-QP 755
Query: 68 VYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGLEY 101
Y+QP YNQ + G P P PP PP Y
Sbjct: 756 SYSQPPYNQGGYSQGYTAPPPPPPP---PPAYNY 786
Score = 42.4 bits (98), Expect = 6e-04
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 4 QNSQMNASHPETNLPVGYPPQYPPTAFQGPP----GYS-GYPGPQVSYPPPPA----GHS 54
+NS + S T+ P P ++ PP GYS GY P PPPPA +
Sbjct: 731 KNSNIPGSSANTSTPTVSSYSPPQPSYSQPPYNQGGYSQGYTAPPPPPPPPPAYNYGSYG 790
Query: 55 GPGPAGF---PVPNQPVYNQPVYNQ 76
G PA + P P Y QP YNQ
Sbjct: 791 GYNPAPYTPPPPPTAQTYPQPSYNQ 815
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 45.1 bits (105), Expect = 9e-05
Identities = 33/89 (37%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 18 PVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQP 77
P G+PP PP PP G+P P PPPP P P P P P P
Sbjct: 684 PPGFPPLPPPP--PPPPPQPGFPMPPPLPPPPP-----PPPPAHPAVTVP---PPPLPAP 733
Query: 78 VGAAGVPWMPAPQPPLNCPPGLEYLSQID 106
G P +P P PP PPGL + Q+D
Sbjct: 734 PGVPPPPILP-PLPPF--PPGLFPVMQVD 759
Score = 30.4 bits (67), Expect = 2.2
Identities = 29/103 (28%), Positives = 34/103 (33%), Gaps = 21/103 (20%)
Query: 14 ETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGP---GPAGFPV------- 63
+ P PP P PP PG PP GP PAG +
Sbjct: 1450 QARAPTPLPPLLPAPLASCPPPMKRKPGRPRRSPPSMLSLDGPLVRPPAGAALGRELLLL 1509
Query: 64 ---PNQPVYNQPVYNQPVGA------AGVPWMPAPQPPLNCPP 97
P PV+ P + P AG+P P P PP PP
Sbjct: 1510 PGQPQTPVF--PSTHDPRTVTLDFRNAGIPAPPPPLPPQPPPP 1550
Score = 28.5 bits (62), Expect = 8.2
Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 20/108 (18%)
Query: 2 DKQNSQMNASHPETNLPVGYPPQYPPTAFQGP------PGYSGYPGPQVSYP----PPPA 51
+K + +S + + P P T+ P PG + P V P PPP
Sbjct: 626 EKMDEGQQSSGEDMEISDDEMPSAPITSADCPKPMVVTPGAAAVAAPSVLAPTLPLPPPP 685
Query: 52 GHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMPAPQPPLNCPPGL 99
G P P P QP + P P P P PP P +
Sbjct: 686 GFPPLPPPPPPPPPQPGFPMPP----------PLPPPPPPPPPAHPAV 723
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 45.1 bits (105), Expect = 9e-05
Identities = 31/86 (36%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 8 MNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAG-FPVPNQ 66
M S P T P G P +PP+ PP YP P V GPGP G +P PN
Sbjct: 71 MYPSVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVP---------GPGPTGPYPTPNM 121
Query: 67 PVYNQPVYNQPVGAAGVPWMPAPQPP 92
P P +P GA P P P
Sbjct: 122 PF---PELPRPYGAPTDPAAAGPLGP 144
Score = 39.3 bits (90), Expect = 0.005
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 8 MNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQP 67
M +P N+P P YP PP + P V + P G GP PA +P P
Sbjct: 157 MGGQYPTPNMPYPSPGPYPAP----PPPQAPGAAPPVPWGTVPPGAWGP-PAPYPAPTGS 211
Query: 68 VYNQPVYNQPVGAAGVPWMPAPQPPL 93
+Y P VP P+ PP+
Sbjct: 212 YPTPGLYPTPSNPFQVPSGPSGAPPM 237
Score = 33.5 bits (75), Expect = 0.26
Identities = 35/99 (35%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 9 NASHPETNLPVGYPPQYPPTAFQGPPGYSGY----PGPQVSYPPPPAGHSGPGPAGFPVP 64
N PE P G P GP G PG YP P + PGP P P
Sbjct: 120 NMPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPP 179
Query: 65 NQ-PVYNQPV--YNQPVGAAGVPWMPAPQPPLNCP-PGL 99
Q P PV P GA G P P P P + P PGL
Sbjct: 180 PQAPGAAPPVPWGTVPPGAWGPP-APYPAPTGSYPTPGL 217
Score = 32.7 bits (73), Expect = 0.44
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 12/87 (13%)
Query: 5 NSQMNASHPETNLPVGYPPQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVP 64
N N S P +++P G PP P+ P G P P YP P PGP P P
Sbjct: 38 NPWNNPSAP-SSVPSGLPPSATPSTV--PFG----PAPTGMYPSVPPTGPPPGP---PAP 87
Query: 65 NQPVYNQPVYNQPVGAAGVPWMPAPQP 91
P + P P G P +P P P
Sbjct: 88 FPP--SGPSCPPPGGPYPAPTVPGPGP 112
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,917,956
Number of Sequences: 37866
Number of extensions: 1133239
Number of successful extensions: 14452
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 695
Number of HSP's that attempted gapping in prelim test: 6810
Number of HSP's gapped (non-prelim): 5051
length of query: 318
length of database: 18,247,518
effective HSP length: 102
effective length of query: 216
effective length of database: 14,385,186
effective search space: 3107200176
effective search space used: 3107200176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.