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Search of human proteins with 239749393
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749393 PREDICTED: hypothetical protein [Homo sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754854 PREDICTED: hypothetical protein [Homo sapiens] 428 e-120
gi|239749393 PREDICTED: hypothetical protein [Homo sapiens] 428 e-120
gi|239743528 PREDICTED: hypothetical protein XP_002342882 [Homo ... 428 e-120
gi|41054864 regulating synaptic membrane exocytosis 1 [Homo sapi... 38 0.005
gi|4758128 doublecortin-like kinase 1 [Homo sapiens] 35 0.035
gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo sap... 33 0.13
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 33 0.13
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.13
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 33 0.13
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.13
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 33 0.13
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 33 0.13
gi|118498364 dapper 1 isoform 2 [Homo sapiens] 33 0.17
gi|24158478 dapper 1 isoform 1 [Homo sapiens] 33 0.17
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 33 0.17
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.17
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 33 0.22
gi|151301154 mucin 6, gastric [Homo sapiens] 33 0.22
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 32 0.29
gi|21735550 mitogen-activated protein kinase kinase kinase 10 [H... 32 0.29
gi|115334682 SNAP25-interacting protein [Homo sapiens] 32 0.29
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 0.29
gi|58532587 BTB (POZ) domain containing 7 isoform 1 [Homo sapiens] 32 0.38
gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo ... 32 0.50
gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo ... 32 0.50
gi|110832843 TBP-associated factor 4 [Homo sapiens] 32 0.50
gi|115511036 alpha-kinase 3 [Homo sapiens] 32 0.50
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 31 0.65
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 31 0.65
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens] 31 0.65
>gi|239754854 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 428 bits (1101), Expect = e-120
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60
MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK
Sbjct: 1 MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60
Query: 61 YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120
YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG
Sbjct: 61 YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120
Query: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180
FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS
Sbjct: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180
Query: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208
PSEEHSPVNRTQLPVLKAEALSKRSHLC
Sbjct: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208
>gi|239749393 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 428 bits (1101), Expect = e-120
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60
MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK
Sbjct: 1 MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60
Query: 61 YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120
YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG
Sbjct: 61 YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120
Query: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180
FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS
Sbjct: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180
Query: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208
PSEEHSPVNRTQLPVLKAEALSKRSHLC
Sbjct: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208
>gi|239743528 PREDICTED: hypothetical protein XP_002342882 [Homo
sapiens]
Length = 208
Score = 428 bits (1101), Expect = e-120
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60
MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK
Sbjct: 1 MDIISSLKVFPYTVPYILEVNLKSYTYLFIRYTFTPVPKPSFCINGEAGIFIVGVEHNTK 60
Query: 61 YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120
YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG
Sbjct: 61 YFFFSDNLLGVLKLLIPSIVKATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPG 120
Query: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180
FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS
Sbjct: 121 FQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTS 180
Query: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208
PSEEHSPVNRTQLPVLKAEALSKRSHLC
Sbjct: 181 PSEEHSPVNRTQLPVLKAEALSKRSHLC 208
>gi|41054864 regulating synaptic membrane exocytosis 1 [Homo
sapiens]
Length = 1692
Score = 38.1 bits (87), Expect = 0.005
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 132 PELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRT 191
PE + G + A PP SPR A R E +A GA+ T + P+ H PV
Sbjct: 405 PEGKAGKRAPAAARASPPDSPRAYSAERTA----ETRAPGAKQLTNHSPPAPRHGPV-PA 459
Query: 192 QLPVLKA-EALSKRSHL 207
+ P LKA E L K+S L
Sbjct: 460 EAPELKAQEPLRKQSRL 476
>gi|4758128 doublecortin-like kinase 1 [Homo sapiens]
Length = 729
Score = 35.4 bits (80), Expect = 0.035
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 106 THTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGK 165
T +PG R + +P V G TPR P PSP +PG+ R+QR +
Sbjct: 296 TKSPGPSRRSKSPASTSSVNGTP-------GSQLSTPRSGKSPSPSPTSPGSLRKQRSSQ 348
Query: 166 EGKARGAQTFTGTTSPSEEH 185
G + + T S +E+
Sbjct: 349 HGGSSTSLASTKVCSSMDEN 368
>gi|169171444 PREDICTED: hypothetical protein LOC154860 [Homo
sapiens]
Length = 125
Score = 33.5 bits (75), Expect = 0.13
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 91 SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
S+ A ET+ P+ TP C ++ PG + + G LR + R +PPP
Sbjct: 22 SQRARVETISPATPPSRTPAGCGTSAETPGPARWSVWRFPGRRLRLRL----RLCGLPPP 77
Query: 151 SPRTPGARRRQRR 163
PGAR + RR
Sbjct: 78 RQERPGARWKLRR 90
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 33.5 bits (75), Expect = 0.13
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 87 LQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFA 146
L ++ A S + P P+ G+ C P + AR G R + P R
Sbjct: 137 LTKYNSAHSSSRVPRPRLPSQRRGAS-CGLGPGPESRAARQGLGGRSARARTRRGPHRTR 195
Query: 147 VPPPSPRTPGARRR-QRRGKEGKARGAQTFTGTTSPS 182
P P P GAR+ G G+ R A T + P+
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPA 232
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.13
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 91 SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
S A P+ L+ AP T G R P + + CA+ G LR G D R + PP
Sbjct: 254 SPAPPAPELREGRAPGSTAGR-RPRPREPQAAEESGCATVG--LRRG--DCDRAGSSQPP 308
Query: 151 SPRTPG-----ARRRQRRGKEGKARGAQTFTGTTSP 181
+ G RRR+RRG G+ G G SP
Sbjct: 309 ATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 344
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 33.5 bits (75), Expect = 0.13
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 87 LQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFA 146
L ++ A S + P P+ G+ C P + AR G R + P R
Sbjct: 137 LTKYNSAHSSSRVPRPRLPSQRRGAS-CGLGPGPESRAARQGLGGRSARARTRRGPHRTR 195
Query: 147 VPPPSPRTPGARRR-QRRGKEGKARGAQTFTGTTSPS 182
P P P GAR+ G G+ R A T + P+
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPA 232
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.13
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 91 SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
S A P+ L+ AP T G R P + + CA+ G LR G D R + PP
Sbjct: 254 SPAPPAPELREGRAPGSTAGR-RPRPREPQAAEESGCATVG--LRRG--DCDRAGSSQPP 308
Query: 151 SPRTPG-----ARRRQRRGKEGKARGAQTFTGTTSP 181
+ G RRR+RRG G+ G G SP
Sbjct: 309 ATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 344
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 33.5 bits (75), Expect = 0.13
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 2/97 (2%)
Query: 87 LQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFA 146
L ++ A S + P P+ G+ C P + AR G R + P R
Sbjct: 137 LTKYNSAHSSSRVPRPRLPSQRRGAS-CGLGPGPESRAARQGLGGRSARARTRRGPHRTR 195
Query: 147 VPPPSPRTPGARRR-QRRGKEGKARGAQTFTGTTSPS 182
P P P GAR+ G G+ R A T + P+
Sbjct: 196 RPEPGPHHTGARQAGPLPGTRGRTRAAGTGSAARGPA 232
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 33.5 bits (75), Expect = 0.13
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 91 SRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPP 150
S A P+ L+ AP T G R P + + CA+ G LR G D R + PP
Sbjct: 254 SPAPPAPELREGRAPGSTAGR-RPRPREPQAAEESGCATVG--LRRG--DCDRAGSSQPP 308
Query: 151 SPRTPG-----ARRRQRRGKEGKARGAQTFTGTTSP 181
+ G RRR+RRG G+ G G SP
Sbjct: 309 ATSGNGERCRFCRRRRRRGGGGEGEGTHATHGPASP 344
>gi|118498364 dapper 1 isoform 2 [Homo sapiens]
Length = 799
Score = 33.1 bits (74), Expect = 0.17
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 21/130 (16%)
Query: 76 IPSIVKATLIPLQNW---SRAAPSETLQLPL---APTHTPGSCRCNSNP----PGFQKVA 125
IPS+ T P + W S+A +E+ ++PL P+ + P P Q+ A
Sbjct: 368 IPSLNNGTFSPPKQWSKESKAEQAESKRVPLPEGCPSGAASDLQSKHLPKTAKPASQEHA 427
Query: 126 RCASFG--------PELRG-GVKDTPRRFAVPPPSPRT--PGARRRQRRGKEGKARGAQT 174
RC++ G +L G K++P R PP + P + Q+ +G
Sbjct: 428 RCSAIGTGESPKESAQLSGASPKESPSRGPAPPQENKVVQPLKKMSQKNSLQGVPPATPP 487
Query: 175 FTGTTSPSEE 184
T P EE
Sbjct: 488 LLSTAFPVEE 497
>gi|24158478 dapper 1 isoform 1 [Homo sapiens]
Length = 836
Score = 33.1 bits (74), Expect = 0.17
Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 21/130 (16%)
Query: 76 IPSIVKATLIPLQNW---SRAAPSETLQLPL---APTHTPGSCRCNSNP----PGFQKVA 125
IPS+ T P + W S+A +E+ ++PL P+ + P P Q+ A
Sbjct: 405 IPSLNNGTFSPPKQWSKESKAEQAESKRVPLPEGCPSGAASDLQSKHLPKTAKPASQEHA 464
Query: 126 RCASFG--------PELRG-GVKDTPRRFAVPPPSPRT--PGARRRQRRGKEGKARGAQT 174
RC++ G +L G K++P R PP + P + Q+ +G
Sbjct: 465 RCSAIGTGESPKESAQLSGASPKESPSRGPAPPQENKVVQPLKKMSQKNSLQGVPPATPP 524
Query: 175 FTGTTSPSEE 184
T P EE
Sbjct: 525 LLSTAFPVEE 534
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 33.1 bits (74), Expect = 0.17
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 100 QLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARR 159
+L ++P C P +A A+ P+ G +TPR P + G R
Sbjct: 203 ELLISPDPQAAFQACERYLPDCDNLAPAATVAPQ---GEPETPR------PRRKGKGKGR 253
Query: 160 RQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLPVLKAE 199
++ RG++GK R T+SP + S N+T + K E
Sbjct: 254 KKGRGRKGKGRKKNKEIWTSSPPPD-SAENQTSTDIPKTE 292
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.1 bits (74), Expect = 0.17
Identities = 33/121 (27%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 86 PLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQ--KVARCASFGPELRGGVKDTPR 143
P+ S A+P+ P +P P S S+PP Q KV+R AS PE
Sbjct: 390 PVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPE---------- 439
Query: 144 RFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLPVLKAEALSK 203
P P+P PG+ R K R G + HS ++ ++ A +K
Sbjct: 440 ---SPKPAP-APGSHREISSSPTSKNRS----HGRAKRDKSHSHTPSRRMGRSRSPATAK 491
Query: 204 R 204
R
Sbjct: 492 R 492
>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.22
Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 95 PSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDT--------PRRFA 146
P + L+ P +P P PG + G R G+ T PRR
Sbjct: 197 PHQALKAPQSPRAFP------PGGPGDAGTPMPKAGGLRKRPGITRTEGNPSPRPPRRLT 250
Query: 147 VPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSP 181
+P PR ARRR++R + R A +G P
Sbjct: 251 LPEDHPRLANARRRRKRALATRVRPAPQTSGRPGP 285
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 32.7 bits (73), Expect = 0.22
Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
Query: 102 PLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTP--GARR 159
P P PGS N G ++ F E V P PP +P+ P G+R
Sbjct: 1163 PSQPQSVPGS-----NIEGCYNCSQDEYFDHEEGVCVPCMPPTTPQPPTTPQLPTTGSRP 1217
Query: 160 RQRRGKEGKARGAQTFTGT-TSPSEEHSPVNRTQLPVLKAEALSKR 204
Q G + + T SPS H+P + TQ P+L A S +
Sbjct: 1218 TQVWPMTGTSTTIGLLSSTGPSPSSNHTPASPTQTPLLPATLTSSK 1263
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 32.3 bits (72), Expect = 0.29
Identities = 48/186 (25%), Positives = 73/186 (39%), Gaps = 46/186 (24%)
Query: 41 SFCINGEAGIFIVGVEHNTKYFF----------FSDNLL---GVLKLLIPSIVKATLIPL 87
SF ++ E+ ++ E + FF F + +L GV L PS+ ++T P
Sbjct: 43 SFTLDDESLKYLTHEEKDVLLFFEETIDSLDEDFEEPVLCDGGVCCLCSPSLEESTSSPS 102
Query: 88 QNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTP----- 142
+ P + + L + P PG+ P G Q A A G E R +TP
Sbjct: 103 E------PEDVIDL-VQPA--PGAGEAEGLPEGTQ-AAGPAPAGKEHRKQDAETPPPPDP 152
Query: 143 ---RRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRT-QLPVLKA 198
PPP P TP RR+ R SP EH + R+ P++ A
Sbjct: 153 PAPETLLAPPPLPSTPDPPRRELR--------------APSPPVEHPRLLRSVPTPLVMA 198
Query: 199 EALSKR 204
+ +S+R
Sbjct: 199 QKISER 204
>gi|21735550 mitogen-activated protein kinase kinase kinase 10 [Homo
sapiens]
Length = 954
Score = 32.3 bits (72), Expect = 0.29
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 88 QNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVK------DT 141
+ WS +AP+ L +P HTP + PGF + F GG T
Sbjct: 584 KQWSSSAPN----LGKSPKHTPIA-------PGFASLNEMEEFAEAEDGGSSVPPSPYST 632
Query: 142 PRRFAVPPPSPRTPGAR 158
P +VP P+ +PGAR
Sbjct: 633 PSYLSVPLPAEPSPGAR 649
>gi|115334682 SNAP25-interacting protein [Homo sapiens]
Length = 1183
Score = 32.3 bits (72), Expect = 0.29
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 24/107 (22%)
Query: 123 KVARCASFGPELRGGVKDTPRRF-----------AVPPPSPRTPGARRRQR--------- 162
+VAR AS P + +KD +VPP TPGA R +
Sbjct: 1061 EVARPASTPPIMASAIKDEDDEDRIIAELESGGGSVPPMKVVTPGASRLKAAQGQAGSPD 1120
Query: 163 RGKEGKARGA----QTFTGTTSPSEEHSPVNRTQLPVLKAEALSKRS 205
+ K GK R Q T PS+E S N T PV + + S+ S
Sbjct: 1121 KSKHGKQRAEYMRIQAQQQATKPSKEMSGSNETSSPVSEKPSASRTS 1167
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.3 bits (72), Expect = 0.29
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 142 PRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLPVLKAEAL 201
PRR PP R+ RR+RR + + + + + S S P RT P K L
Sbjct: 329 PRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRL 388
Query: 202 S 202
S
Sbjct: 389 S 389
Score = 27.7 bits (60), Expect = 7.2
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%)
Query: 108 TPGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEG 167
+P R ++PP K S P+ R P++ + P R+P + R+G
Sbjct: 607 SPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSP 666
Query: 168 KARGAQTFTGTTSPSEEHSPVNRTQLP 194
+ + P++ HSP R + P
Sbjct: 667 SRSTRE--ARSPQPNKRHSPSPRPRAP 691
>gi|58532587 BTB (POZ) domain containing 7 isoform 1 [Homo sapiens]
Length = 1132
Score = 32.0 bits (71), Expect = 0.38
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 87 LQNWSRAAPSETL--QLPLAPTHTPGSCRCNSNPPG---FQKVARCASFGPELRGGVKDT 141
LQN + P E + PL PG CR NS PP F + +F P L
Sbjct: 706 LQNPHKFFPDERFGDESPLLTMRQPGRCRVNSTPPAETMFTDLDSFVAFHPPL------- 758
Query: 142 PRRFAVPPPSPRTPGARRRQRRGKEG 167
PPP P P A + K G
Sbjct: 759 -----PPPPPPYHPPATPIHNQLKAG 779
>gi|239756987 PREDICTED: hypothetical protein XP_002345138 [Homo
sapiens]
Length = 459
Score = 31.6 bits (70), Expect = 0.50
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 109 PGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRF---AVPPPSPRTPGAR------- 158
PGS + P ++ +R A P R A PPP+PR P +R
Sbjct: 173 PGSTSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRL 232
Query: 159 --RRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLP-VLKAE 199
R ++R G A + F+G + S E P + P VL AE
Sbjct: 233 LSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAE 276
>gi|239746003 PREDICTED: hypothetical protein XP_002344191 [Homo
sapiens]
Length = 459
Score = 31.6 bits (70), Expect = 0.50
Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 13/104 (12%)
Query: 109 PGSCRCNSNPPGFQKVARCASFGPELRGGVKDTPRRF---AVPPPSPRTPGAR------- 158
PGS + P ++ +R A P R A PPP+PR P +R
Sbjct: 173 PGSTSSATRVPRARRSSRRALQPRHAAPDAPGAPSRSTSQATPPPAPRFPASRRPGAPRL 232
Query: 159 --RRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLP-VLKAE 199
R ++R G A + F+G + S E P + P VL AE
Sbjct: 233 LSRTRQRELGGSAAPSVAFSGDVTLSLERGPASAKPPPQVLTAE 276
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 31.6 bits (70), Expect = 0.50
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 131 GPELRGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNR 190
GP ++G + P AVPPP+P TP G A GA T + + +P+ S +
Sbjct: 376 GPTMQGAL---PSPAAVPPPAPGTP-------TGLPKGAAGAVTQSLSRTPTATTSGIRA 425
Query: 191 TQLPVLKAEAL 201
T P + A L
Sbjct: 426 TLTPTVLAPRL 436
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 31.6 bits (70), Expect = 0.50
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 102 PLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGV---KDTPRRFAVPPPSPRTPGAR 158
PLAP G C++ G ++ R G +G V +DT F PP P R
Sbjct: 52 PLAPARPRGPLICHT---GHEQAGREPGPGSSTKGPVLHDQDTRCAFLPRPPGPLQT-RR 107
Query: 159 RRQRRGKEGKARGAQTFTGTTSPS 182
+ +G++G GA GT +P+
Sbjct: 108 YCRHQGRQGSGLGAGPGAGTWAPA 131
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 31.2 bits (69), Expect = 0.65
Identities = 28/113 (24%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 82 ATLIPLQNWSRAAPSETLQLPLAPTHTPGSCRCNSNPPGFQKVARCASFGPELRGGVKDT 141
ATL P+ + AP +T P P+ T + +S PP S +
Sbjct: 152 ATLAPVNS---PAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAP 208
Query: 142 PRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLP 194
P A PP P T A E A T +P +P T +P
Sbjct: 209 PETTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVP 261
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 31.2 bits (69), Expect = 0.65
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 135 RGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLP 194
R G RR A+PPP R+P AR G Q G HSP + P
Sbjct: 75 RPGRAPGDRRAALPPPGTRSPFARAAAELGP-----SYQQIAGLRRRPVSHSPAHERPSP 129
Query: 195 VLKAEALSKRS 205
A A ++ S
Sbjct: 130 ASSAAASARTS 140
>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 31.2 bits (69), Expect = 0.65
Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 135 RGGVKDTPRRFAVPPPSPRTPGARRRQRRGKEGKARGAQTFTGTTSPSEEHSPVNRTQLP 194
R G RR A+PPP R+P AR G Q G HSP + P
Sbjct: 75 RPGRAPGDRRAALPPPGTRSPFARAAAELGP-----SYQQIAGLRRRPVSHSPAHERPSP 129
Query: 195 VLKAEALSKRS 205
A A ++ S
Sbjct: 130 ASSAAASARTS 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,890,809
Number of Sequences: 37866
Number of extensions: 554872
Number of successful extensions: 2698
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 2571
Number of HSP's gapped (non-prelim): 249
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.